HEADER IMMUNE SYSTEM 06-OCT-16 5TKK TITLE STRUCTURE OF MOUSE VACCINATION-ELICITED HIV NEUTRALIZING ANTIBODY TITLE 2 VFP5.01 IN COMPLEX WITH HIV-1 FUSION PEPTIDE RESIDUE 512-519 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 FUSION PEPTIDE RESIDUE 512-519; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MOUSE ANTIBODY VFP5.01 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MOUSE ANTIBODY VFP5.01 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 10 MOL_ID: 3; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS NEUTRALIZING, MOUSE, ANTIBODY, FUSION-PEPTIDE, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,K.LIU,P.D.KWONG REVDAT 2 27-JUN-18 5TKK 1 JRNL REVDAT 1 04-APR-18 5TKK 0 JRNL AUTH K.XU,P.ACHARYA,R.KONG,C.CHENG,G.Y.CHUANG,K.LIU,M.K.LOUDER, JRNL AUTH 2 S.O'DELL,R.RAWI,M.SASTRY,C.H.SHEN,B.ZHANG,T.ZHOU,M.ASOKAN, JRNL AUTH 3 R.T.BAILER,M.CHAMBERS,X.CHEN,C.W.CHOI,V.P.DANDEY, JRNL AUTH 4 N.A.DORIA-ROSE,A.DRUZ,E.T.ENG,S.K.FARNEY,K.E.FOULDS,H.GENG, JRNL AUTH 5 I.S.GEORGIEV,J.GORMAN,K.R.HILL,A.J.JAFARI,Y.D.KWON,Y.T.LAI, JRNL AUTH 6 T.LEMMIN,K.MCKEE,T.Y.OHR,L.OU,D.PENG,A.P.ROWSHAN,Z.SHENG, JRNL AUTH 7 J.P.TODD,Y.TSYBOVSKY,E.G.VIOX,Y.WANG,H.WEI,Y.YANG,A.F.ZHOU, JRNL AUTH 8 R.CHEN,L.YANG,D.G.SCORPIO,A.B.MCDERMOTT,L.SHAPIRO, JRNL AUTH 9 B.CARRAGHER,C.S.POTTER,J.R.MASCOLA,P.D.KWONG JRNL TITL EPITOPE-BASED VACCINE DESIGN YIELDS FUSION PEPTIDE-DIRECTED JRNL TITL 2 ANTIBODIES THAT NEUTRALIZE DIVERSE STRAINS OF HIV-1. JRNL REF NAT. MED. V. 24 857 2018 JRNL REFN ISSN 1546-170X JRNL PMID 29867235 JRNL DOI 10.1038/S41591-018-0042-6 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 59675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.4728 - 4.2703 0.92 2629 109 0.1589 0.1958 REMARK 3 2 4.2703 - 3.3920 0.99 2810 138 0.1621 0.1910 REMARK 3 3 3.3920 - 2.9639 1.00 2756 158 0.1922 0.2305 REMARK 3 4 2.9639 - 2.6933 1.00 2799 142 0.2087 0.2482 REMARK 3 5 2.6933 - 2.5004 1.00 2774 146 0.2264 0.2554 REMARK 3 6 2.5004 - 2.3531 1.00 2798 133 0.2268 0.2644 REMARK 3 7 2.3531 - 2.2353 0.99 2711 161 0.2340 0.2624 REMARK 3 8 2.2353 - 2.1381 0.99 2760 121 0.2328 0.2608 REMARK 3 9 2.1381 - 2.0558 0.99 2767 161 0.2216 0.2476 REMARK 3 10 2.0558 - 1.9849 0.99 2757 164 0.2308 0.2965 REMARK 3 11 1.9849 - 1.9229 0.99 2714 127 0.2300 0.2374 REMARK 3 12 1.9229 - 1.8679 0.99 2764 137 0.2528 0.3552 REMARK 3 13 1.8679 - 1.8187 0.99 2720 155 0.2580 0.3013 REMARK 3 14 1.8187 - 1.7744 0.99 2755 130 0.2718 0.2980 REMARK 3 15 1.7744 - 1.7341 0.98 2722 130 0.2640 0.2951 REMARK 3 16 1.7341 - 1.6972 0.98 2724 153 0.2742 0.2994 REMARK 3 17 1.6972 - 1.6632 0.98 2728 135 0.2804 0.3227 REMARK 3 18 1.6632 - 1.6318 0.98 2696 164 0.2860 0.3258 REMARK 3 19 1.6318 - 1.6027 0.97 2663 121 0.2948 0.3384 REMARK 3 20 1.6027 - 1.5755 0.93 2572 119 0.3060 0.3655 REMARK 3 21 1.5755 - 1.5501 0.77 2127 125 0.3131 0.4277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3439 REMARK 3 ANGLE : 1.275 4683 REMARK 3 CHIRALITY : 0.077 526 REMARK 3 PLANARITY : 0.008 594 REMARK 3 DIHEDRAL : 17.384 2052 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 512 THROUGH 519 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9558 -7.6604 42.5224 REMARK 3 T TENSOR REMARK 3 T11: 0.7232 T22: 0.6237 REMARK 3 T33: 0.2406 T12: 0.0579 REMARK 3 T13: 0.1465 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0182 L22: 0.1172 REMARK 3 L33: 0.0003 L12: -0.0354 REMARK 3 L13: 0.0004 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.0265 S13: 0.0147 REMARK 3 S21: 0.0238 S22: 0.0103 S23: 0.0042 REMARK 3 S31: -0.0334 S32: 0.0261 S33: 0.0217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4641 -21.2981 33.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.4186 REMARK 3 T33: 0.1285 T12: -0.0832 REMARK 3 T13: -0.0227 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3581 L22: 0.4547 REMARK 3 L33: 0.4123 L12: 0.0715 REMARK 3 L13: -0.3972 L23: -0.1395 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.2113 S13: -0.0655 REMARK 3 S21: 0.0157 S22: 0.0832 S23: -0.0128 REMARK 3 S31: 0.0443 S32: -0.4034 S33: 0.2985 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 110 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0069 -21.3001 4.1415 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1115 REMARK 3 T33: 0.2219 T12: -0.0362 REMARK 3 T13: -0.0238 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 0.3972 L22: 0.3427 REMARK 3 L33: 1.3445 L12: 0.2819 REMARK 3 L13: -0.4419 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: -0.2083 S13: -0.0209 REMARK 3 S21: 0.0974 S22: -0.1767 S23: -0.1430 REMARK 3 S31: 0.3295 S32: 0.2657 S33: -0.3512 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9794 -4.6459 18.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.4405 T22: 0.7942 REMARK 3 T33: 0.4720 T12: 0.2641 REMARK 3 T13: 0.1661 T23: 0.2979 REMARK 3 L TENSOR REMARK 3 L11: 0.0299 L22: 0.0264 REMARK 3 L33: 0.1967 L12: 0.0234 REMARK 3 L13: -0.0663 L23: -0.0723 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: -0.1654 S13: -0.0818 REMARK 3 S21: 0.0100 S22: 0.0543 S23: 0.1197 REMARK 3 S31: -0.0024 S32: -0.1385 S33: 0.0080 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 14 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3162 5.2224 18.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.7856 T22: 0.4936 REMARK 3 T33: 0.6686 T12: 0.3144 REMARK 3 T13: 0.4120 T23: 0.1932 REMARK 3 L TENSOR REMARK 3 L11: 0.1212 L22: 0.0233 REMARK 3 L33: 0.2071 L12: -0.0073 REMARK 3 L13: -0.1008 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0840 S13: 0.0451 REMARK 3 S21: -0.0775 S22: 0.1059 S23: -0.0544 REMARK 3 S31: -0.1392 S32: -0.0658 S33: 0.2661 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 26 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6425 -1.3626 29.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.6420 T22: 0.3697 REMARK 3 T33: 0.3008 T12: 0.0342 REMARK 3 T13: 0.2605 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 0.1511 L22: 0.1083 REMARK 3 L33: 0.1126 L12: 0.0027 REMARK 3 L13: 0.1297 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.2708 S12: -0.1196 S13: 0.3104 REMARK 3 S21: 0.3378 S22: 0.0447 S23: 0.2096 REMARK 3 S31: -0.3876 S32: 0.0556 S33: 0.4302 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3869 2.0955 23.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.6851 T22: 0.4277 REMARK 3 T33: 0.4806 T12: 0.1579 REMARK 3 T13: 0.3025 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 0.0992 L22: 0.3356 REMARK 3 L33: 0.4365 L12: -0.0327 REMARK 3 L13: -0.1619 L23: -0.1452 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: -0.0451 S13: 0.2695 REMARK 3 S21: 0.0979 S22: 0.3013 S23: 0.2123 REMARK 3 S31: -0.2989 S32: -0.0706 S33: 0.4061 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7693 -11.6956 4.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.0917 REMARK 3 T33: 0.1956 T12: 0.0946 REMARK 3 T13: 0.0408 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.1665 L22: 0.1353 REMARK 3 L33: 1.0841 L12: 0.1576 REMARK 3 L13: -0.2225 L23: -0.2905 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0437 S13: -0.0534 REMARK 3 S21: 0.0227 S22: 0.0966 S23: 0.0549 REMARK 3 S31: -0.0697 S32: -0.4455 S33: 0.3569 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 145 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7372 -18.6253 -13.8477 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.5168 REMARK 3 T33: 0.1631 T12: -0.0877 REMARK 3 T13: -0.0547 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.0101 L22: 0.0089 REMARK 3 L33: 0.1205 L12: 0.0097 REMARK 3 L13: 0.0079 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.0682 S13: -0.0676 REMARK 3 S21: -0.1154 S22: 0.0636 S23: 0.0460 REMARK 3 S31: 0.0712 S32: -0.0980 S33: 0.0481 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 156 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0441 -10.1240 2.9112 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.1513 REMARK 3 T33: 0.2026 T12: -0.0003 REMARK 3 T13: -0.0090 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.0365 L22: 0.5726 REMARK 3 L33: 1.1714 L12: -0.0998 REMARK 3 L13: -0.1932 L23: 0.4075 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.1308 S13: 0.0447 REMARK 3 S21: 0.1495 S22: 0.0649 S23: -0.0269 REMARK 3 S31: -0.2437 S32: -0.3330 S33: 0.1643 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7755 -18.5823 -13.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.2553 REMARK 3 T33: 0.1582 T12: -0.0529 REMARK 3 T13: -0.0438 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 0.3764 REMARK 3 L33: 0.5663 L12: 0.0689 REMARK 3 L13: -0.5436 L23: 0.1938 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: 0.4613 S13: 0.0807 REMARK 3 S21: -0.2801 S22: -0.0233 S23: 0.0280 REMARK 3 S31: 0.0848 S32: -0.5206 S33: 0.0262 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.469 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS-HCL PH8.5, 20% REMARK 280 PEG8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.11650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 1 REMARK 465 GLY H 129 REMARK 465 ASP H 130 REMARK 465 THR H 131 REMARK 465 THR H 132 REMARK 465 ILE H 216 REMARK 465 LYS H 217 REMARK 465 PRO H 218 REMARK 465 CYS H 219 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 601 O HOH A 605 1.81 REMARK 500 O HOH H 453 O HOH L 425 1.84 REMARK 500 O HOH H 302 O HOH H 313 1.88 REMARK 500 O HOH H 372 O HOH H 465 1.89 REMARK 500 O SER H 62 O HOH H 301 1.90 REMARK 500 O HOH L 391 O HOH L 418 1.94 REMARK 500 O HOH H 319 O HOH H 358 1.96 REMARK 500 O HOH L 415 O HOH L 429 1.96 REMARK 500 O GLN L 6 O HOH L 301 1.99 REMARK 500 O PRO H 215 O HOH H 302 1.99 REMARK 500 OE1 GLN L 8 N PHE L 10 2.00 REMARK 500 O HOH H 480 O HOH L 451 2.00 REMARK 500 O HOH H 469 O HOH H 480 2.01 REMARK 500 O HOH L 344 O HOH L 431 2.03 REMARK 500 O HOH H 367 O HOH H 449 2.03 REMARK 500 O HOH H 464 O HOH H 468 2.05 REMARK 500 NE ARG H 71 O HOH H 303 2.07 REMARK 500 O SER L 20 O HOH L 302 2.08 REMARK 500 OH TYR H 98 O HOH H 304 2.09 REMARK 500 O HOH L 336 O HOH L 379 2.10 REMARK 500 O HOH L 303 O HOH L 329 2.10 REMARK 500 OD1 ASN L 138 O HOH L 303 2.11 REMARK 500 OE2 GLU L 195 O HOH L 304 2.11 REMARK 500 O HOH H 380 O HOH H 393 2.13 REMARK 500 O THR H 73 O HOH H 305 2.15 REMARK 500 O HOH H 469 O HOH L 451 2.15 REMARK 500 O HOH L 306 O HOH L 405 2.15 REMARK 500 OH TYR L 36 O HOH L 305 2.15 REMARK 500 OH TYR H 102 O HOH H 306 2.16 REMARK 500 NE2 HIS H 164 O HOH L 303 2.16 REMARK 500 O HOH H 424 O HOH L 430 2.17 REMARK 500 O HOH L 303 O HOH L 320 2.17 REMARK 500 O HOH H 408 O HOH H 458 2.17 REMARK 500 O HOH H 373 O HOH H 432 2.18 REMARK 500 O HOH H 453 O HOH L 436 2.19 REMARK 500 O HOH H 429 O HOH H 459 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 177 CA - CB - CG ANGL. DEV. = 25.6 DEGREES REMARK 500 MET L 175 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -10.47 78.09 REMARK 500 TYR H 33 -171.07 59.96 REMARK 500 ASN H 43 0.85 87.81 REMARK 500 LYS H 64 -136.95 59.93 REMARK 500 SER H 172 -121.81 51.25 REMARK 500 SER L 7 -73.63 -53.94 REMARK 500 ALA L 51 -30.31 71.64 REMARK 500 ASN L 77 73.50 55.24 REMARK 500 ASN L 138 66.10 60.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TKJ RELATED DB: PDB REMARK 900 TWO STRUCTURE FROM THE SAME PROJECT AND WILL BE PUBLISHED IN SAME REMARK 900 PAPER. DBREF 5TKK A 512 519 PDB 5TKK 5TKK 512 519 DBREF 5TKK H 1 219 PDB 5TKK 5TKK 1 219 DBREF 5TKK L 1 214 PDB 5TKK 5TKK 1 214 SEQRES 1 A 8 ALA VAL GLY ILE GLY ALA VAL PHE SEQRES 1 H 222 ASP VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 222 PRO SER GLN SER LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 H 222 TYR SER ILE THR ARG ALA TYR TYR TRP ASN TRP ILE ARG SEQRES 4 H 222 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE SEQRES 5 H 222 LEU TYR ASP GLY ARG SER ASP TYR ASN PRO SER LEU LYS SEQRES 6 H 222 ASN ARG VAL SER ILE THR ARG ASP THR SER LYS ASN GLN SEQRES 7 H 222 PHE PHE LEU LYS LEU ASN SER VAL THR ALA GLU ASP THR SEQRES 8 H 222 ALA ARG TYR TYR CYS THR ARG GLU GLY ASN TYR ARG ALA SEQRES 9 H 222 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 10 H 222 LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL SEQRES 11 H 222 CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY CYS SEQRES 12 H 222 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 H 222 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 H 222 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 H 222 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SER SEQRES 16 H 222 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 H 222 VAL ASP LYS LYS ILE GLU PRO ARG VAL PRO ILE LYS PRO SEQRES 18 H 222 CYS SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER GLN LYS PHE MET SER THR SEQRES 2 L 214 SER VAL GLY ASP ARG VAL SER ILE THR CYS LYS ALA SER SEQRES 3 L 214 GLN ASN VAL GLY SER ASP VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 L 214 ASN ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE ASN ASN MET SEQRES 7 L 214 LYS SER GLU ASP LEU ALA ASP TYR PHE CYS GLN GLN TYR SEQRES 8 L 214 SER SER TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS FORMUL 4 HOH *337(H2 O) HELIX 1 AA1 VAL A 513 ALA A 517 5 5 HELIX 2 AA2 PRO H 61 LYS H 64 5 4 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 SER H 156 SER H 158 5 3 HELIX 5 AA5 PRO H 200 SER H 203 5 4 HELIX 6 AA6 LYS L 79 LEU L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 THR H 25 -1 O SER H 23 N GLN H 5 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 GLY H 96 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TYR H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 LEU H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 SER H 57 TYR H 59 -1 O ASP H 58 N TYR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 GLY H 96 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 ARG H 99 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 AA4 4 LEU H 174 THR H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 AA4 4 VAL H 163 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 AA5 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AA6 4 MET L 4 GLN L 6 0 SHEET 2 AA6 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA6 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA6 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 AA7 6 PHE L 10 THR L 13 0 SHEET 2 AA7 6 THR L 102 LEU L 106 1 O GLU L 105 N MET L 11 SHEET 3 AA7 6 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 VAL L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA7 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA7 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA8 4 PHE L 10 THR L 13 0 SHEET 2 AA8 4 THR L 102 LEU L 106 1 O GLU L 105 N MET L 11 SHEET 3 AA8 4 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 THR L 114 PHE L 118 0 SHEET 2 AA9 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 AA9 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 AA9 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 AB1 4 SER L 153 ARG L 155 0 SHEET 2 AB1 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB1 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 AB1 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.12 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.10 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.13 CISPEP 1 PHE H 146 PRO H 147 0 -3.44 CISPEP 2 GLU H 148 PRO H 149 0 -5.76 CISPEP 3 TRP H 188 PRO H 189 0 1.50 CISPEP 4 TYR L 94 PRO L 95 0 -0.54 CISPEP 5 TYR L 140 PRO L 141 0 4.35 CRYST1 36.237 82.233 72.264 90.00 90.22 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027596 0.000000 0.000108 0.00000 SCALE2 0.000000 0.012161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013838 0.00000