HEADER LYASE 06-OCT-16 5TKL TITLE CRYSTAL STRUCTURE OF FBP ALDOLASE FROM TOXOPLASMA GONDII, CONDENSATION TITLE 2 INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: ALD-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-STAR (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PE-SUMO-AMP KEYWDS TIM BARREL, ALDOLASE, GLYCOLYSIS, LYASE, SUBSTRATE, INTERMEDIATE, KEYWDS 2 ENAMINE, COVALENT, SCHIFF BASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.HERON,J.SYGUSCH REVDAT 4 08-JAN-20 5TKL 1 REMARK REVDAT 3 13-DEC-17 5TKL 1 JRNL REVDAT 2 18-OCT-17 5TKL 1 JRNL REVDAT 1 04-OCT-17 5TKL 0 JRNL AUTH P.W.HERON,J.SYGUSCH JRNL TITL ISOMER ACTIVATION CONTROLS STEREOSPECIFICITY OF CLASS I JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASES. JRNL REF J. BIOL. CHEM. V. 292 19849 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28972169 JRNL DOI 10.1074/JBC.M117.811034 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1488 - 4.2202 1.00 2484 154 0.1488 0.1617 REMARK 3 2 4.2202 - 3.3499 1.00 2378 148 0.1223 0.1660 REMARK 3 3 3.3499 - 2.9266 1.00 2317 144 0.1379 0.1447 REMARK 3 4 2.9266 - 2.6590 1.00 2323 144 0.1366 0.1642 REMARK 3 5 2.6590 - 2.4684 1.00 2308 144 0.1337 0.1652 REMARK 3 6 2.4684 - 2.3229 1.00 2288 142 0.1342 0.1805 REMARK 3 7 2.3229 - 2.2066 1.00 2274 141 0.1377 0.1720 REMARK 3 8 2.2066 - 2.1105 1.00 2268 142 0.1490 0.1696 REMARK 3 9 2.1105 - 2.0293 1.00 2286 141 0.1598 0.2143 REMARK 3 10 2.0293 - 1.9592 1.00 2258 141 0.1793 0.2236 REMARK 3 11 1.9592 - 1.8980 1.00 2275 140 0.2055 0.2521 REMARK 3 12 1.8980 - 1.8437 1.00 2274 143 0.2322 0.2476 REMARK 3 13 1.8437 - 1.7952 1.00 2251 139 0.2362 0.2747 REMARK 3 14 1.7952 - 1.7514 0.98 2205 137 0.2799 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2800 REMARK 3 ANGLE : 0.804 3795 REMARK 3 CHIRALITY : 0.047 419 REMARK 3 PLANARITY : 0.005 496 REMARK 3 DIHEDRAL : 14.157 1706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8166 3.1993 -4.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.1753 REMARK 3 T33: 0.2507 T12: -0.0382 REMARK 3 T13: -0.0074 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.2364 L22: 2.2401 REMARK 3 L33: 0.7469 L12: 0.6142 REMARK 3 L13: -0.2357 L23: 0.3822 REMARK 3 S TENSOR REMARK 3 S11: -0.1336 S12: 0.1052 S13: 0.1651 REMARK 3 S21: -0.3035 S22: 0.1882 S23: 0.4469 REMARK 3 S31: -0.2329 S32: -0.0459 S33: 0.0101 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6324 0.4742 -7.0153 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.1706 REMARK 3 T33: 0.1284 T12: 0.0005 REMARK 3 T13: -0.0161 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.9781 L22: 1.2743 REMARK 3 L33: 0.4751 L12: 0.1933 REMARK 3 L13: -0.0016 L23: -0.0687 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0978 S13: 0.0809 REMARK 3 S21: -0.1079 S22: 0.0590 S23: 0.1596 REMARK 3 S31: -0.0050 S32: -0.0406 S33: 0.0126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8577 -8.7054 -15.3991 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2143 REMARK 3 T33: 0.2674 T12: -0.0353 REMARK 3 T13: -0.1198 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.8283 L22: 0.9856 REMARK 3 L33: 1.1992 L12: 0.4710 REMARK 3 L13: -0.2451 L23: 0.5576 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.1847 S13: 0.0227 REMARK 3 S21: -0.4450 S22: -0.0118 S23: 0.4561 REMARK 3 S31: -0.0295 S32: -0.0934 S33: -0.0398 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34234 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.2M LITHIUM REMARK 280 SULFATE, 3.5% PEG 8000, 10% PEG 1000, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.81050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.81050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.47900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.81050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.81050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.47900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.81050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.81050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.47900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.81050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.81050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.47900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 704 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 798 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 803 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 348 REMARK 465 GLY A 349 REMARK 465 ALA A 350 REMARK 465 LEU A 351 REMARK 465 ALA A 352 REMARK 465 ALA A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 LEU A 356 REMARK 465 PHE A 357 REMARK 465 GLU A 358 REMARK 465 LYS A 359 REMARK 465 ARG A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 139 O HOH A 501 1.67 REMARK 500 O HOH A 674 O HOH A 776 1.91 REMARK 500 O HOH A 806 O HOH A 825 1.94 REMARK 500 O HOH A 664 O HOH A 743 1.95 REMARK 500 O HOH A 717 O HOH A 796 1.95 REMARK 500 O HOH A 676 O HOH A 702 2.01 REMARK 500 O HOH A 724 O HOH A 741 2.01 REMARK 500 O HOH A 814 O HOH A 817 2.01 REMARK 500 O HOH A 505 O HOH A 789 2.03 REMARK 500 O HOH A 568 O HOH A 639 2.08 REMARK 500 O HOH A 553 O HOH A 659 2.11 REMARK 500 O HOH A 737 O HOH A 741 2.12 REMARK 500 O HOH A 562 O HOH A 736 2.12 REMARK 500 O HOH A 680 O HOH A 822 2.13 REMARK 500 O HOH A 584 O HOH A 669 2.16 REMARK 500 O6 P6F A 401 O HOH A 502 2.16 REMARK 500 O HOH A 680 O HOH A 767 2.16 REMARK 500 O HOH A 611 O HOH A 699 2.16 REMARK 500 O HOH A 755 O HOH A 765 2.17 REMARK 500 O HOH A 766 O HOH A 787 2.17 REMARK 500 O1P G3H A 403 O HOH A 502 2.18 REMARK 500 O ILE A 47 O HOH A 503 2.19 REMARK 500 O HOH A 507 O HOH A 620 2.19 REMARK 500 O HOH A 695 O HOH A 742 2.19 REMARK 500 O5 P6F A 401 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 714 O HOH A 766 8555 1.88 REMARK 500 O HOH A 573 O HOH A 801 7555 1.92 REMARK 500 O HOH A 639 O HOH A 770 7555 1.96 REMARK 500 O HOH A 573 O HOH A 762 7555 2.09 REMARK 500 O HOH A 536 O HOH A 738 4445 2.12 REMARK 500 O HOH A 529 O HOH A 765 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 45.62 -89.70 REMARK 500 SER A 299 -153.38 -143.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6F A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3H A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TJS RELATED DB: PDB REMARK 900 RELATED ID: 5TK3 RELATED DB: PDB REMARK 900 RELATED ID: 5TKC RELATED DB: PDB REMARK 900 RELATED ID: 5TKN RELATED DB: PDB REMARK 900 RELATED ID: 5TKP RELATED DB: PDB DBREF 5TKL A 1 363 UNP Q8I8I2 Q8I8I2_TOXGO 1 363 SEQRES 1 A 363 MET SER GLY TYR GLY LEU PRO ILE SER GLN GLU VAL ALA SEQRES 2 A 363 LYS GLU LEU ALA GLU ASN ALA ARG LYS ILE ALA ALA PRO SEQRES 3 A 363 GLY LYS GLY ILE LEU ALA ALA ASP GLU SER THR GLY THR SEQRES 4 A 363 ILE LYS LYS ARG PHE ASP SER ILE GLY VAL GLU ASN THR SEQRES 5 A 363 GLU ALA ASN ARG ALA PHE TYR ARG ASP LEU LEU PHE SER SEQRES 6 A 363 THR LYS GLY LEU GLY GLN TYR ILE SER GLY ALA ILE LEU SEQRES 7 A 363 PHE GLU GLU THR LEU TYR GLN LYS SER PRO SER GLY VAL SEQRES 8 A 363 PRO MET VAL ASP LEU LEU LYS ALA GLU GLY ILE ILE PRO SEQRES 9 A 363 GLY ILE LYS VAL ASP LYS GLY LEU GLU THR LEU PRO LEU SEQRES 10 A 363 THR ASP ASP GLU LYS ALA THR MET GLY LEU ASP GLY LEU SEQRES 11 A 363 SER GLU ARG CYS LYS LYS TYR TYR GLU ALA GLY ALA ARG SEQRES 12 A 363 PHE ALA LYS TRP ARG ALA VAL LEU SER ILE ASP PRO ALA SEQRES 13 A 363 LYS GLY LYS PRO THR ASN LEU SER ILE THR GLU VAL ALA SEQRES 14 A 363 HIS GLY LEU ALA ARG TYR ALA ALA ILE CYS GLN ALA ASN SEQRES 15 A 363 ARG LEU VAL PRO ILE VAL GLU PRO GLU ILE LEU THR ASP SEQRES 16 A 363 GLY SER HIS ASP ILE THR VAL CYS ALA GLU VAL THR GLU SEQRES 17 A 363 ARG VAL LEU ALA ALA VAL PHE LYS ALA LEU ASN ASP HIS SEQRES 18 A 363 HIS VAL LEU LEU GLU GLY ALA LEU LEU LYS PRO ASN MET SEQRES 19 A 363 VAL THR HIS GLY SER ASP CYS PRO LYS PRO ALA SER HIS SEQRES 20 A 363 GLU GLU ILE ALA PHE TYR THR VAL ARG SER LEU LYS ARG SEQRES 21 A 363 THR VAL PRO PRO ALA LEU PRO GLY VAL MET PHE LEU SER SEQRES 22 A 363 GLY GLY GLN SER GLU GLU ASP ALA SER LEU ASN LEU ASN SEQRES 23 A 363 GLU MET ASN LYS MET GLY PRO HIS PRO PHE GLN LEU SER SEQRES 24 A 363 PHE SER TYR GLY ARG ALA LEU GLN ALA SER CYS LEU LYS SEQRES 25 A 363 ALA TRP LYS GLY VAL PRO GLU ASN LYS ALA LYS ALA GLN SEQRES 26 A 363 GLN VAL LEU MET GLU ARG ALA ARG ALA ASN GLY GLU ALA SEQRES 27 A 363 GLN LEU GLY LYS TYR GLY GLY GLY ALA GLY GLY ALA LEU SEQRES 28 A 363 ALA ALA SER SER LEU PHE GLU LYS ARG TYR VAL TYR HET P6F A 401 29 HET 13P A 402 13 HET G3H A 403 15 HETNAM P6F 1,6-DI-O-PHOSPHONO-D-FRUCTOSE HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM G3H GLYCERALDEHYDE-3-PHOSPHATE FORMUL 2 P6F C6 H14 O12 P2 FORMUL 3 13P C3 H7 O6 P FORMUL 4 G3H C3 H7 O6 P FORMUL 5 HOH *330(H2 O) HELIX 1 AA1 SER A 9 ALA A 24 1 16 HELIX 2 AA2 SER A 36 SER A 46 1 11 HELIX 3 AA3 THR A 52 SER A 65 1 14 HELIX 4 AA4 GLY A 68 GLN A 71 5 4 HELIX 5 AA5 PHE A 79 TYR A 84 1 6 HELIX 6 AA6 PRO A 92 GLU A 100 1 9 HELIX 7 AA7 GLY A 129 ALA A 140 1 12 HELIX 8 AA8 ASP A 154 GLY A 158 5 5 HELIX 9 AA9 THR A 161 ASN A 182 1 22 HELIX 10 AB1 ASP A 199 HIS A 221 1 23 HELIX 11 AB2 LEU A 224 ALA A 228 5 5 HELIX 12 AB3 SER A 246 ARG A 260 1 15 HELIX 13 AB4 SER A 277 MET A 291 1 15 HELIX 14 AB5 GLY A 303 LYS A 315 1 13 HELIX 15 AB6 VAL A 317 GLU A 319 5 3 HELIX 16 AB7 ASN A 320 LEU A 340 1 21 SHEET 1 AA1 9 GLY A 29 ALA A 33 0 SHEET 2 AA1 9 ILE A 73 LEU A 78 1 O GLY A 75 N LEU A 31 SHEET 3 AA1 9 ILE A 103 LYS A 107 1 O GLY A 105 N ALA A 76 SHEET 4 AA1 9 PHE A 144 LEU A 151 1 O PHE A 144 N ILE A 106 SHEET 5 AA1 9 VAL A 185 ILE A 192 1 O GLU A 189 N ALA A 149 SHEET 6 AA1 9 LEU A 229 LEU A 230 1 O LEU A 229 N VAL A 188 SHEET 7 AA1 9 GLY A 268 PHE A 271 1 O MET A 270 N LEU A 230 SHEET 8 AA1 9 GLN A 297 TYR A 302 1 O SER A 299 N VAL A 269 SHEET 9 AA1 9 GLY A 29 ALA A 33 1 N ILE A 30 O PHE A 300 SHEET 1 AA2 2 LEU A 112 THR A 114 0 SHEET 2 AA2 2 LYS A 122 THR A 124 -1 O ALA A 123 N GLU A 113 LINK NZ ALYS A 231 C2 AP6F A 401 1555 1555 1.27 LINK NZ BLYS A 231 C2 B13P A 402 1555 1555 1.44 CISPEP 1 LYS A 159 PRO A 160 0 2.11 CISPEP 2 GLY A 292 PRO A 293 0 5.69 SITE 1 AC1 25 ALA A 32 ASP A 34 SER A 36 THR A 39 SITE 2 AC1 25 LYS A 107 LYS A 146 ARG A 148 GLU A 189 SITE 3 AC1 25 LYS A 231 SER A 273 GLY A 274 SER A 301 SITE 4 AC1 25 TYR A 302 GLY A 303 ARG A 304 13P A 402 SITE 5 AC1 25 G3H A 403 HOH A 502 HOH A 505 HOH A 509 SITE 6 AC1 25 HOH A 516 HOH A 532 HOH A 580 HOH A 596 SITE 7 AC1 25 HOH A 643 SITE 1 AC2 14 ALA A 32 ASP A 34 LYS A 146 LYS A 231 SITE 2 AC2 14 SER A 273 GLY A 274 SER A 301 TYR A 302 SITE 3 AC2 14 GLY A 303 ARG A 304 P6F A 401 G3H A 403 SITE 4 AC2 14 HOH A 509 HOH A 580 SITE 1 AC3 16 SER A 36 THR A 39 LYS A 107 LYS A 146 SITE 2 AC3 16 ARG A 148 GLU A 189 LYS A 231 P6F A 401 SITE 3 AC3 16 13P A 402 HOH A 502 HOH A 505 HOH A 516 SITE 4 AC3 16 HOH A 532 HOH A 580 HOH A 596 HOH A 643 CRYST1 109.621 109.621 54.958 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018196 0.00000