HEADER CELL ADHESION 20-OCT-16 5TPK TITLE CRYSTAL STRUCTURE OF MOUSE PROTOCADHERIN-15 EC7-8 V875A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN RESIDUES 715-924; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDH15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,M.SOTOMAYOR REVDAT 4 04-OCT-23 5TPK 1 REMARK REVDAT 3 07-OCT-20 5TPK 1 JRNL LINK REVDAT 2 18-DEC-19 5TPK 1 REMARK REVDAT 1 25-OCT-17 5TPK 0 JRNL AUTH D.CHOUDHARY,Y.NARUI,B.L.NEEL,L.N.WIMALASENA,C.F.KLANSECK, JRNL AUTH 2 P.DE-LA-TORRE,C.CHEN,R.ARAYA-SECCHI,E.TAMILSELVAN, JRNL AUTH 3 M.SOTOMAYOR JRNL TITL STRUCTURAL DETERMINANTS OF PROTOCADHERIN-15 MECHANICS AND JRNL TITL 2 FUNCTION IN HEARING AND BALANCE PERCEPTION. JRNL REF PROC.NATL.ACAD.SCI.USA 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32963095 JRNL DOI 10.1073/PNAS.1920444117 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 14026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.95000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1624 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1518 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2223 ; 1.315 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3483 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;33.743 ;24.304 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;12.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1866 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 810 ; 0.916 ; 2.529 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 809 ; 0.917 ; 2.527 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1010 ; 1.603 ; 3.777 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1011 ; 1.602 ; 3.778 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 814 ; 0.848 ; 2.669 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 812 ; 0.848 ; 2.667 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1211 ; 1.433 ; 3.963 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1705 ; 5.006 ;30.406 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1682 ; 4.903 ;29.966 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 691 A 791 REMARK 3 RESIDUE RANGE : A 1001 A 1002 REMARK 3 ORIGIN FOR THE GROUP (A): -30.6925 -15.9745 -10.6030 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0943 REMARK 3 T33: 0.0212 T12: -0.0227 REMARK 3 T13: -0.0164 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.5490 L22: 2.4569 REMARK 3 L33: 2.9710 L12: 0.1162 REMARK 3 L13: -0.0244 L23: 0.1100 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0865 S13: -0.0260 REMARK 3 S21: -0.3542 S22: 0.0502 S23: 0.1247 REMARK 3 S31: 0.0746 S32: -0.3883 S33: -0.0729 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 792 A 897 REMARK 3 RESIDUE RANGE : A 1003 A 1003 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2615 -9.5956 19.4973 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0240 REMARK 3 T33: 0.0484 T12: -0.0036 REMARK 3 T13: 0.0338 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 6.2892 L22: 1.7605 REMARK 3 L33: 4.2247 L12: 0.0183 REMARK 3 L13: 2.2752 L23: 0.1397 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: -0.3413 S13: 0.1529 REMARK 3 S21: 0.2009 S22: -0.0438 S23: 0.0574 REMARK 3 S31: -0.0679 S32: -0.2456 S33: 0.1122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 70.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CHLORIDE, 10% PEG3350, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.89800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 11.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.89800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 11.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 688 REMARK 465 VAL A 689 REMARK 465 ALA A 863 REMARK 465 PHE A 864 REMARK 465 PRO A 865 REMARK 465 ASP A 866 REMARK 465 GLN A 867 REMARK 465 GLU A 868 REMARK 465 LEU A 898 REMARK 465 GLU A 899 REMARK 465 HIS A 900 REMARK 465 HIS A 901 REMARK 465 HIS A 902 REMARK 465 HIS A 903 REMARK 465 HIS A 904 REMARK 465 HIS A 905 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 723 80.74 -65.98 REMARK 500 ASP A 860 -98.39 -136.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 690 OD1 REMARK 620 2 ASN A 692 O 98.9 REMARK 620 3 ASP A 722 OD1 162.3 92.0 REMARK 620 4 ASP A 722 OD2 148.3 81.7 47.0 REMARK 620 5 ASP A 724 OD2 90.5 89.6 75.6 121.1 REMARK 620 6 ASN A 728 O 100.1 160.4 70.8 79.7 94.9 REMARK 620 7 ASP A 772 OD2 68.5 90.7 125.6 79.9 158.8 91.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 708 OE2 REMARK 620 2 GLU A 709 OE2 91.9 REMARK 620 3 ASN A 757 OD1 94.8 85.1 REMARK 620 4 GLU A 759 OE1 86.2 174.4 89.8 REMARK 620 5 ASP A 793 OD2 98.8 79.2 159.5 106.3 REMARK 620 6 HOH A1194 O 170.4 97.3 88.8 84.9 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 708 OE1 REMARK 620 2 GLU A 759 OE1 89.1 REMARK 620 3 GLU A 759 OE2 112.0 48.4 REMARK 620 4 ASP A 790 OD1 83.5 112.2 73.1 REMARK 620 5 ILE A 791 O 84.5 155.5 154.6 90.6 REMARK 620 6 ASP A 793 OD1 90.2 76.8 118.0 168.7 79.5 REMARK 620 7 ASP A 826 OD1 164.9 94.9 81.1 108.3 85.9 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 792 OD1 REMARK 620 2 ASN A 794 O 87.9 REMARK 620 3 ASP A 824 OD1 155.8 90.9 REMARK 620 4 ASP A 824 OD2 152.2 93.2 52.0 REMARK 620 5 ASP A 826 OD2 75.4 78.9 80.7 132.1 REMARK 620 6 HOH A1101 O 82.9 170.8 97.5 94.8 98.9 REMARK 620 7 HOH A1163 O 73.8 92.9 130.4 78.4 148.4 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 DBREF 5TPK A 689 897 UNP Q99PJ1 PCD15_MOUSE 715 923 SEQADV 5TPK MET A 688 UNP Q99PJ1 INITIATING METHIONINE SEQADV 5TPK ALA A 875 UNP Q99PJ1 VAL 901 ENGINEERED MUTATION SEQADV 5TPK LEU A 898 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK GLU A 899 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK HIS A 900 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK HIS A 901 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK HIS A 902 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK HIS A 903 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK HIS A 904 UNP Q99PJ1 EXPRESSION TAG SEQADV 5TPK HIS A 905 UNP Q99PJ1 EXPRESSION TAG SEQRES 1 A 218 MET VAL ASN ASP ASN ALA PRO VAL PHE ASP PRO TYR LEU SEQRES 2 A 218 PRO ARG ASN LEU SER VAL VAL GLU GLU GLU ALA ASN ALA SEQRES 3 A 218 PHE VAL GLY GLN VAL ARG ALA THR ASP PRO ASP ALA GLY SEQRES 4 A 218 ILE ASN GLY GLN VAL HIS TYR SER LEU GLY ASN PHE ASN SEQRES 5 A 218 ASN LEU PHE ARG ILE THR SER ASN GLY SER ILE TYR THR SEQRES 6 A 218 ALA VAL LYS LEU ASN ARG GLU ALA ARG ASP HIS TYR GLU SEQRES 7 A 218 LEU VAL VAL VAL ALA THR ASP GLY ALA VAL HIS PRO ARG SEQRES 8 A 218 HIS SER THR LEU THR LEU TYR ILE LYS VAL LEU ASP ILE SEQRES 9 A 218 ASP ASP ASN SER PRO VAL PHE THR ASN SER THR TYR THR SEQRES 10 A 218 VAL VAL VAL GLU GLU ASN LEU PRO ALA GLY THR SER PHE SEQRES 11 A 218 LEU GLN ILE GLU ALA LYS ASP VAL ASP LEU GLY ALA ASN SEQRES 12 A 218 VAL SER TYR ARG ILE ARG SER PRO GLU VAL LYS HIS LEU SEQRES 13 A 218 PHE ALA LEU HIS PRO PHE THR GLY GLU LEU SER LEU LEU SEQRES 14 A 218 ARG SER LEU ASP TYR GLU ALA PHE PRO ASP GLN GLU ALA SEQRES 15 A 218 SER ILE THR PHE LEU ALA GLU ALA PHE ASP ILE TYR GLY SEQRES 16 A 218 THR MET PRO PRO GLY ILE ALA THR VAL THR VAL ILE VAL SEQRES 17 A 218 LYS ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HETNAM CA CALCIUM ION FORMUL 2 CA 4(CA 2+) FORMUL 6 HOH *121(H2 O) HELIX 1 AA1 SER A 837 LYS A 841 5 5 SHEET 1 AA1 2 VAL A 695 PHE A 696 0 SHEET 2 AA1 2 ALA A 720 THR A 721 -1 O THR A 721 N VAL A 695 SHEET 1 AA2 4 ASN A 703 VAL A 707 0 SHEET 2 AA2 4 HIS A 779 LEU A 789 1 O LEU A 789 N VAL A 706 SHEET 3 AA2 4 HIS A 763 ASP A 772 -1 N TYR A 764 O ILE A 786 SHEET 4 AA2 4 VAL A 731 LEU A 735 -1 N HIS A 732 O THR A 771 SHEET 1 AA3 3 PHE A 714 GLN A 717 0 SHEET 2 AA3 3 SER A 749 THR A 752 -1 O ILE A 750 N GLY A 716 SHEET 3 AA3 3 PHE A 742 ILE A 744 -1 N ARG A 743 O TYR A 751 SHEET 1 AA4 2 VAL A 797 PHE A 798 0 SHEET 2 AA4 2 ALA A 822 LYS A 823 -1 O LYS A 823 N VAL A 797 SHEET 1 AA5 4 THR A 802 GLU A 808 0 SHEET 2 AA5 4 GLY A 887 LYS A 896 1 O LYS A 896 N VAL A 807 SHEET 3 AA5 4 SER A 870 ASP A 879 -1 N PHE A 873 O VAL A 891 SHEET 4 AA5 4 VAL A 831 ILE A 835 -1 N ARG A 834 O GLU A 876 SHEET 1 AA6 3 SER A 816 GLN A 819 0 SHEET 2 AA6 3 GLU A 852 LEU A 855 -1 O LEU A 853 N LEU A 818 SHEET 3 AA6 3 PHE A 844 LEU A 846 -1 N ALA A 845 O SER A 854 LINK OD1 ASN A 690 CA CA A1004 1555 1555 2.36 LINK O ASN A 692 CA CA A1004 1555 1555 2.34 LINK OE2 GLU A 708 CA CA A1001 1555 1555 2.37 LINK OE1 GLU A 708 CA CA A1002 1555 1555 2.32 LINK OE2 GLU A 709 CA CA A1001 1555 1555 2.48 LINK OD1 ASP A 722 CA CA A1004 1555 1555 2.58 LINK OD2 ASP A 722 CA CA A1004 1555 1555 2.87 LINK OD2 ASP A 724 CA CA A1004 1555 1555 2.58 LINK O ASN A 728 CA CA A1004 1555 1555 2.50 LINK OD1 ASN A 757 CA CA A1001 1555 1555 2.32 LINK OE1 GLU A 759 CA CA A1001 1555 1555 2.33 LINK OE1 GLU A 759 CA CA A1002 1555 1555 2.79 LINK OE2 GLU A 759 CA CA A1002 1555 1555 2.45 LINK OD2 ASP A 772 CA CA A1004 1555 1555 2.80 LINK OD1 ASP A 790 CA CA A1002 1555 1555 2.46 LINK O ILE A 791 CA CA A1002 1555 1555 2.35 LINK OD1 ASP A 792 CA CA A1003 1555 1555 2.33 LINK OD2 ASP A 793 CA CA A1001 1555 1555 2.41 LINK OD1 ASP A 793 CA CA A1002 1555 1555 2.41 LINK O ASN A 794 CA CA A1003 1555 1555 2.23 LINK OD1 ASP A 824 CA CA A1003 1555 1555 2.55 LINK OD2 ASP A 824 CA CA A1003 1555 1555 2.46 LINK OD1 ASP A 826 CA CA A1002 1555 1555 2.29 LINK OD2 ASP A 826 CA CA A1003 1555 1555 2.36 LINK CA CA A1001 O HOH A1194 1555 1555 2.35 LINK CA CA A1003 O HOH A1101 1555 1555 2.08 LINK CA CA A1003 O HOH A1163 1555 1555 2.43 SITE 1 AC1 6 GLU A 708 GLU A 709 ASN A 757 GLU A 759 SITE 2 AC1 6 ASP A 793 HOH A1194 SITE 1 AC2 6 GLU A 708 GLU A 759 ASP A 790 ILE A 791 SITE 2 AC2 6 ASP A 793 ASP A 826 SITE 1 AC3 6 ASP A 792 ASN A 794 ASP A 824 ASP A 826 SITE 2 AC3 6 HOH A1101 HOH A1163 SITE 1 AC4 6 ASN A 690 ASN A 692 ASP A 722 ASP A 724 SITE 2 AC4 6 ASN A 728 ASP A 772 CRYST1 135.796 22.990 70.741 90.00 97.27 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007364 0.000000 0.000939 0.00000 SCALE2 0.000000 0.043497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014251 0.00000