HEADER ISOMERASE 21-OCT-16 5TPV TITLE X-RAY STRUCTURE OF WLARA (TDP-FUCOSE-3,4-KETOISOMERASE) FROM TITLE 2 CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: WLARA, TDP-FUCOSE-3,4-KETOISOMERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI 81116; SOURCE 3 ORGANISM_TAXID: 407148; SOURCE 4 STRAIN: 81116; SOURCE 5 GENE: WLARA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS KETOISOMERASE, LIPOOLIGOSACCHARIDE, DEOXY-SUGAR, UNUSUAL SUGAR, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,J.B.THODEN,Z.A.LI,A.S.RIEGERT,M.-F.GONEAU,A.M.CUNNINGHAM, AUTHOR 2 E.VINOGRAD,I.C.SCHOENHOFEN,M.GILBERT,J.LI REVDAT 7 04-OCT-23 5TPV 1 REMARK REVDAT 6 01-JAN-20 5TPV 1 REMARK REVDAT 5 11-APR-18 5TPV 1 REMARK REVDAT 4 04-APR-18 5TPV 1 REMARK REVDAT 3 27-SEP-17 5TPV 1 REMARK REVDAT 2 12-APR-17 5TPV 1 JRNL REVDAT 1 01-FEB-17 5TPV 0 JRNL AUTH Z.Z.LI,A.S.RIEGERT,M.F.GONEAU,A.M.CUNNINGHAM,E.VINOGRADOV, JRNL AUTH 2 J.LI,I.C.SCHOENHOFEN,J.B.THODEN,H.M.HOLDEN,M.GILBERT JRNL TITL CHARACTERIZATION OF THE DTDP-FUC3N AND DTDP-QUI3N JRNL TITL 2 BIOSYNTHETIC PATHWAYS IN CAMPYLOBACTER JEJUNI 81116. JRNL REF GLYCOBIOLOGY V. 27 358 2017 JRNL REFN ESSN 1460-2423 JRNL PMID 28096310 JRNL DOI 10.1093/GLYCOB/CWW136 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 125.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.62000 REMARK 3 B22 (A**2) : -1.62000 REMARK 3 B33 (A**2) : 3.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3570 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3373 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4820 ; 2.135 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7780 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 8.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;35.961 ;25.341 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;18.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;27.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3897 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 838 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1613 ; 5.110 ; 4.081 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1612 ; 5.103 ; 4.077 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2011 ; 6.226 ; 6.084 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2012 ; 6.225 ; 6.089 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1957 ; 7.055 ; 4.766 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1941 ; 6.766 ; 4.720 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2785 ; 9.407 ; 6.825 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4142 ;11.102 ;34.298 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4091 ;11.127 ;34.144 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : EXCILLUM METALJET D2+ 160 KV REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BRUKER PHOTON II CPAD REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-10% PEG-8000, 1.25 M REMARK 280 TETRAETHYLAMMONIUM CHLORIDE, 2% DIMETHYLSULFOXIDE, 5MM TDP, PH 5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 88.97650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.30000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 88.97650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 44.30000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 88.97650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 44.30000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 88.97650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.30000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 88.97650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.30000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 88.97650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.30000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 88.97650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 44.30000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 88.97650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 88.97650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -177.95300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 368 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 GLY A 138 REMARK 465 TYR A 139 REMARK 465 ALA A 140 REMARK 465 ILE A 141 REMARK 465 LYS A 142 REMARK 465 THR A 143 REMARK 465 MET A 144 REMARK 465 PRO A 145 REMARK 465 LEU A 146 REMARK 465 GLU A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 TYR B 139 REMARK 465 ALA B 140 REMARK 465 ILE B 141 REMARK 465 LYS B 142 REMARK 465 THR B 143 REMARK 465 MET B 144 REMARK 465 PRO B 145 REMARK 465 LEU B 146 REMARK 465 GLU B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 ASN C 132 REMARK 465 ILE C 133 REMARK 465 VAL C 134 REMARK 465 TRP C 135 REMARK 465 ARG C 136 REMARK 465 GLY C 137 REMARK 465 GLY C 138 REMARK 465 TYR C 139 REMARK 465 ALA C 140 REMARK 465 ILE C 141 REMARK 465 LYS C 142 REMARK 465 THR C 143 REMARK 465 MET C 144 REMARK 465 PRO C 145 REMARK 465 LEU C 146 REMARK 465 GLU C 147 REMARK 465 HIS C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 359 O HOH A 376 2.13 REMARK 500 OH TYR A 113 OE2 GLU B 30 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 353 O HOH A 353 7555 1.85 REMARK 500 OE2 GLU C 30 OH TYR C 113 5455 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 70 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 115 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP C 90 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 103 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 123.31 -37.58 REMARK 500 CYS A 27 114.34 179.14 REMARK 500 ASN A 81 25.46 -156.40 REMARK 500 CYS B 27 135.57 -178.43 REMARK 500 ASN B 81 9.95 -150.09 REMARK 500 CYS C 27 121.19 -176.55 REMARK 500 SER C 44 163.56 -48.50 REMARK 500 ASN C 81 17.96 -156.18 REMARK 500 LYS C 130 14.35 -58.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD C 201 DBREF 5TPV A 1 145 UNP Q9ALS3 Q9ALS3_CAMJU 1 145 DBREF 5TPV B 1 145 UNP Q9ALS3 Q9ALS3_CAMJU 1 145 DBREF 5TPV C 1 145 UNP Q9ALS3 Q9ALS3_CAMJU 1 145 SEQADV 5TPV LEU A 146 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV GLU A 147 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS A 148 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS A 149 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS A 150 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS A 151 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS A 152 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS A 153 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV LEU B 146 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV GLU B 147 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS B 148 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS B 149 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS B 150 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS B 151 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS B 152 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS B 153 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV LEU C 146 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV GLU C 147 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS C 148 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS C 149 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS C 150 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS C 151 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS C 152 UNP Q9ALS3 EXPRESSION TAG SEQADV 5TPV HIS C 153 UNP Q9ALS3 EXPRESSION TAG SEQRES 1 A 153 MET ASN TYR THR ILE LEU LYS PHE LYS THR ILE ASN SER SEQRES 2 A 153 LYS ASN SER ILE LEU ASN VAL HIS GLN LYS ASP VAL ASN SEQRES 3 A 153 CYS PRO PHE GLU ILE LYS ARG ILE PHE TYR ILE TYR ASP SEQRES 4 A 153 PHE LEU ASP ASP SER ILE ARG GLY ASP HIS ALA ASN LEU SEQRES 5 A 153 ASN SER GLU PHE ILE PHE ILE ALA LEU ASN GLY SER CYS SEQRES 6 A 153 GLU ILE LEU ILE ASP ASP GLY LYS THR LYS GLN LYS ILE SEQRES 7 A 153 ILE LEU ASN ASN LYS THR LYS GLY LEU TYR ILE ASP LYS SEQRES 8 A 153 MET ILE TRP LYS GLN MET TYR ASN PHE SER LYS ASP CYS SEQRES 9 A 153 ILE LEU LEU VAL LEU THR ASN THR TYR TYR ASP GLU LYS SEQRES 10 A 153 GLU TYR ILE TYR ASP TYR LYS TYR PHE CYS GLU LEU LYS SEQRES 11 A 153 ASN ASN ILE VAL TRP ARG GLY GLY TYR ALA ILE LYS THR SEQRES 12 A 153 MET PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 153 MET ASN TYR THR ILE LEU LYS PHE LYS THR ILE ASN SER SEQRES 2 B 153 LYS ASN SER ILE LEU ASN VAL HIS GLN LYS ASP VAL ASN SEQRES 3 B 153 CYS PRO PHE GLU ILE LYS ARG ILE PHE TYR ILE TYR ASP SEQRES 4 B 153 PHE LEU ASP ASP SER ILE ARG GLY ASP HIS ALA ASN LEU SEQRES 5 B 153 ASN SER GLU PHE ILE PHE ILE ALA LEU ASN GLY SER CYS SEQRES 6 B 153 GLU ILE LEU ILE ASP ASP GLY LYS THR LYS GLN LYS ILE SEQRES 7 B 153 ILE LEU ASN ASN LYS THR LYS GLY LEU TYR ILE ASP LYS SEQRES 8 B 153 MET ILE TRP LYS GLN MET TYR ASN PHE SER LYS ASP CYS SEQRES 9 B 153 ILE LEU LEU VAL LEU THR ASN THR TYR TYR ASP GLU LYS SEQRES 10 B 153 GLU TYR ILE TYR ASP TYR LYS TYR PHE CYS GLU LEU LYS SEQRES 11 B 153 ASN ASN ILE VAL TRP ARG GLY GLY TYR ALA ILE LYS THR SEQRES 12 B 153 MET PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 153 MET ASN TYR THR ILE LEU LYS PHE LYS THR ILE ASN SER SEQRES 2 C 153 LYS ASN SER ILE LEU ASN VAL HIS GLN LYS ASP VAL ASN SEQRES 3 C 153 CYS PRO PHE GLU ILE LYS ARG ILE PHE TYR ILE TYR ASP SEQRES 4 C 153 PHE LEU ASP ASP SER ILE ARG GLY ASP HIS ALA ASN LEU SEQRES 5 C 153 ASN SER GLU PHE ILE PHE ILE ALA LEU ASN GLY SER CYS SEQRES 6 C 153 GLU ILE LEU ILE ASP ASP GLY LYS THR LYS GLN LYS ILE SEQRES 7 C 153 ILE LEU ASN ASN LYS THR LYS GLY LEU TYR ILE ASP LYS SEQRES 8 C 153 MET ILE TRP LYS GLN MET TYR ASN PHE SER LYS ASP CYS SEQRES 9 C 153 ILE LEU LEU VAL LEU THR ASN THR TYR TYR ASP GLU LYS SEQRES 10 C 153 GLU TYR ILE TYR ASP TYR LYS TYR PHE CYS GLU LEU LYS SEQRES 11 C 153 ASN ASN ILE VAL TRP ARG GLY GLY TYR ALA ILE LYS THR SEQRES 12 C 153 MET PRO LEU GLU HIS HIS HIS HIS HIS HIS HET TYD A 201 25 HET TYD B 201 25 HET PO4 B 202 5 HET PO4 B 203 5 HET TYD C 201 25 HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 4 TYD 3(C10 H16 N2 O11 P2) FORMUL 6 PO4 2(O4 P 3-) FORMUL 9 HOH *211(H2 O) HELIX 1 AA1 ASP A 115 LYS A 117 5 3 HELIX 2 AA2 ASP A 122 ASN A 132 1 11 HELIX 3 AA3 ASP B 115 LYS B 117 5 3 HELIX 4 AA4 ASP B 122 GLY B 137 1 16 HELIX 5 AA5 ASP C 115 LYS C 117 5 3 HELIX 6 AA6 ASP C 122 LYS C 130 1 9 SHEET 1 AA1 7 TYR A 3 LYS A 7 0 SHEET 2 AA1 7 LYS A 85 ILE A 89 -1 O GLY A 86 N LEU A 6 SHEET 3 AA1 7 PHE A 56 ASN A 62 -1 N PHE A 56 O ILE A 89 SHEET 4 AA1 7 ILE A 105 THR A 110 -1 O LEU A 107 N ILE A 59 SHEET 5 AA1 7 ARG A 33 TYR A 38 -1 N PHE A 35 O VAL A 108 SHEET 6 AA1 7 SER B 16 HIS B 21 -1 O HIS B 21 N ILE A 34 SHEET 7 AA1 7 ILE B 11 SER B 13 -1 N ILE B 11 O LEU B 18 SHEET 1 AA2 7 ILE A 11 SER A 13 0 SHEET 2 AA2 7 SER A 16 GLN A 22 -1 O LEU A 18 N ILE A 11 SHEET 3 AA2 7 ARG B 33 TYR B 38 -1 O TYR B 36 N ASN A 19 SHEET 4 AA2 7 ILE B 105 THR B 110 -1 O VAL B 108 N PHE B 35 SHEET 5 AA2 7 PHE B 56 ASN B 62 -1 N ILE B 59 O LEU B 107 SHEET 6 AA2 7 LYS B 85 ILE B 89 -1 O LEU B 87 N PHE B 58 SHEET 7 AA2 7 TYR B 3 LYS B 7 -1 N THR B 4 O TYR B 88 SHEET 1 AA3 5 LYS A 75 LEU A 80 0 SHEET 2 AA3 5 CYS A 65 ASP A 70 -1 N ILE A 67 O ILE A 78 SHEET 3 AA3 5 TRP A 94 TYR A 98 -1 O TYR A 98 N GLU A 66 SHEET 4 AA3 5 ILE A 45 ASN A 51 -1 N ARG A 46 O MET A 97 SHEET 5 AA3 5 TYR A 119 ILE A 120 -1 O ILE A 120 N ALA A 50 SHEET 1 AA4 5 LYS B 75 LEU B 80 0 SHEET 2 AA4 5 CYS B 65 ASP B 70 -1 N ILE B 67 O ILE B 78 SHEET 3 AA4 5 TRP B 94 TYR B 98 -1 O GLN B 96 N LEU B 68 SHEET 4 AA4 5 ARG B 46 ASN B 51 -1 N ARG B 46 O MET B 97 SHEET 5 AA4 5 TYR B 119 ILE B 120 -1 O ILE B 120 N ALA B 50 SHEET 1 AA5 5 TYR C 3 LYS C 7 0 SHEET 2 AA5 5 LYS C 85 ILE C 89 -1 O TYR C 88 N THR C 4 SHEET 3 AA5 5 PHE C 56 ASN C 62 -1 N PHE C 58 O LEU C 87 SHEET 4 AA5 5 ILE C 105 THR C 110 -1 O LEU C 107 N ILE C 59 SHEET 5 AA5 5 ARG C 33 ILE C 37 -1 N PHE C 35 O VAL C 108 SHEET 1 AA6 2 ILE C 11 ASN C 12 0 SHEET 2 AA6 2 ILE C 17 LEU C 18 -1 O LEU C 18 N ILE C 11 SHEET 1 AA7 5 LYS C 75 LEU C 80 0 SHEET 2 AA7 5 CYS C 65 ASP C 70 -1 N CYS C 65 O LEU C 80 SHEET 3 AA7 5 TRP C 94 TYR C 98 -1 O GLN C 96 N LEU C 68 SHEET 4 AA7 5 ARG C 46 ASN C 51 -1 N ARG C 46 O MET C 97 SHEET 5 AA7 5 TYR C 119 ILE C 120 -1 O ILE C 120 N ALA C 50 SITE 1 AC1 12 ARG A 33 ARG A 46 GLY A 47 HIS A 49 SITE 2 AC1 12 TYR A 114 TYR A 119 HOH A 330 HOH A 344 SITE 3 AC1 12 ILE B 11 LYS B 14 LEU B 18 VAL B 20 SITE 1 AC2 14 ILE A 11 LYS A 14 LEU A 18 VAL A 20 SITE 2 AC2 14 HOH A 309 ARG B 33 ARG B 46 GLY B 47 SITE 3 AC2 14 HIS B 49 TYR B 114 TYR B 119 TYR B 121 SITE 4 AC2 14 HOH B 339 HOH B 345 SITE 1 AC3 1 GLN B 96 SITE 1 AC4 1 TYR B 123 SITE 1 AC5 8 LYS A 117 LEU C 18 VAL C 20 ARG C 33 SITE 2 AC5 8 HIS C 49 TYR C 114 TYR C 119 TYR C 121 CRYST1 177.953 177.953 88.600 90.00 90.00 90.00 I 4 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011287 0.00000