HEADER VIRUS 29-OCT-16 5TSL TITLE MOLECULAR DYNAMICS FLEXIBLE FITTING MODEL OF COXSACKIEVIRUS A16 EMPTY TITLE 2 PROCAPSID VP3 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: COXSACKIEVIRUS A16; COMPND 3 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A16; SOURCE 3 ORGANISM_TAXID: 31704; SOURCE 4 STRAIN: SZ05; SOURCE 5 CELL_LINE: VERO KEYWDS COXSACKIEVIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR C.FAN,Y.CONG,X.YE,Z.HUANG REVDAT 3 20-MAR-24 5TSL 1 REMARK REVDAT 2 23-OCT-19 5TSL 1 REMARK CRYST1 SCALE REVDAT 1 01-FEB-17 5TSL 0 JRNL AUTH F.CHEN,X.YE,Z.I.KU,L.L.KONG,Q.LIU,C.XU,Y.CONG,Z.HUANG JRNL TITL STRUCTURAL ALTERATION AND SURFACE MODIFI CATION OF JRNL TITL 2 COXSACKIEVIRUS A16 CAPSIDS BY BETA-PROPIOLACTONE TREATMENT JRNL REF J.VIROL. 2017 JRNL REFN ESSN 1098-5514 REMARK 2 REMARK 2 RESOLUTION. 6.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : JSPR, JSPR, NAMD, JSPR, JSPR, JSPR, REMARK 3 JSPR, NAMD REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4JGY REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : WEIGHTING FACTOR OF 0.5 WAS CHOSEN TO WEIGH REMARK 3 THE CONTRIBUTION OF THE CRYO-EM MAP IN THE MOLECULAR DYNAMIC REMARK 3 SIMULATION. THE SIMULATION STARTED WITH 20 000 STEPS OF REMARK 3 MINIMIZATION FOLLOWED BY 100 000 STEPS OF MOLECULAR DYNAMICS REMARK 3 BEFORE CONVERGING. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.500 REMARK 3 NUMBER OF PARTICLES : 1642 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5TSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224740. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COXSACKIEVIRUS A16 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.22 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.05 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 57000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 2 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 3 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 4 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 4 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 5 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 7 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 9 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 10 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 12 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 12 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 13 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 13 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 14 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 15 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 17 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 17 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 18 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 18 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 19 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 19 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 20 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 20 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 20 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 22 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 24 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 24 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 24 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 25 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 25 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 27 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 27 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 28 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 28 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 29 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 29 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 29 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 30 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 30 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 30 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 32 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 33 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 33 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 34 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 34 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 34 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 35 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 35 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 35 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 37 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 37 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 38 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 38 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 39 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 39 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 39 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 40 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 40 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 40 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 42 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 44 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 44 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 45 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 45 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 45 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 47 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 47 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 48 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 49 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 50 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 50 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 50 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 52 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 52 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 54 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 54 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 55 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 55 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 55 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 57 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 57 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 58 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 58 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 59 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 60 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 60 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 60 -0.500000 0.809017 -0.309017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS C 180 REMARK 465 ALA C 181 REMARK 465 ARG C 182 REMARK 465 ALA C 183 REMARK 465 GLY C 184 REMARK 465 TYR C 185 REMARK 465 PHE C 186 REMARK 465 GLN C 237 REMARK 465 THR C 238 REMARK 465 ALA C 239 REMARK 465 ASN C 240 REMARK 465 ILE C 241 REMARK 465 GLN C 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 236 C GLU C 236 O -0.228 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 62 -34.94 -32.37 REMARK 500 THR C 64 54.57 -146.94 REMARK 500 ASP C 89 61.23 -112.69 REMARK 500 PRO C 90 -57.29 -29.36 REMARK 500 SER C 124 142.93 -39.53 REMARK 500 ARG C 178 -115.88 -163.99 REMARK 500 TYR C 188 -18.66 -176.80 REMARK 500 THR C 190 127.60 -172.94 REMARK 500 LEU C 228 94.02 64.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8325 RELATED DB: EMDB REMARK 900 MOLECULAR DYNAMICS FLEXIBLE FITTING MODEL OF COXSACKIEVIRUS A16 REMARK 900 EMPTY PROCAPSID VP3 SUBUNIT REMARK 900 RELATED ID: 5TSK RELATED DB: PDB DBREF 5TSL C 1 242 PDB 5TSL 5TSL 1 242 SEQRES 1 C 242 GLY ILE PRO THR GLU LEU LYS PRO GLY THR ASN GLN PHE SEQRES 2 C 242 LEU THR THR ASP ASP GLY VAL SER ALA PRO ILE LEU PRO SEQRES 3 C 242 GLY PHE HIS PRO THR PRO PRO ILE HIS ILE PRO GLY GLU SEQRES 4 C 242 VAL HIS ASN LEU LEU GLU ILE CYS ARG VAL GLU THR ILE SEQRES 5 C 242 LEU GLU VAL ASN ASN LEU LYS THR ASN GLU THR THR PRO SEQRES 6 C 242 MET GLN ARG LEU CYS PHE PRO VAL SER VAL GLN SER LYS SEQRES 7 C 242 THR GLY GLU LEU CYS ALA ALA PHE ARG ALA ASP PRO GLY SEQRES 8 C 242 ARG ASP GLY PRO TRP GLN SER THR ILE LEU GLY GLN LEU SEQRES 9 C 242 CYS ARG TYR TYR THR GLN TRP SER GLY SER LEU GLU VAL SEQRES 10 C 242 THR PHE MET PHE ALA GLY SER PHE MET ALA THR GLY LYS SEQRES 11 C 242 MET LEU ILE ALA TYR THR PRO PRO GLY GLY ASN VAL PRO SEQRES 12 C 242 ALA ASP ARG ILE THR ALA MET LEU GLY THR HIS VAL ILE SEQRES 13 C 242 TRP ASP PHE GLY LEU GLN SER SER VAL THR LEU VAL VAL SEQRES 14 C 242 PRO TRP ILE SER ASN THR HIS TYR ARG ALA HIS ALA ARG SEQRES 15 C 242 ALA GLY TYR PHE ASP TYR TYR THR THR GLY ILE ILE THR SEQRES 16 C 242 ILE TRP TYR GLN THR ASN TYR VAL VAL PRO ILE GLY ALA SEQRES 17 C 242 PRO THR THR ALA TYR ILE VAL ALA LEU ALA ALA ALA GLN SEQRES 18 C 242 ASP ASN PHE THR MET LYS LEU CYS LYS ASP THR GLU ASP SEQRES 19 C 242 ILE GLU GLN THR ALA ASN ILE GLN HELIX 1 AA1 ASN C 42 ARG C 48 1 7 HELIX 2 AA2 THR C 64 ARG C 68 5 5 HELIX 3 AA3 GLY C 94 SER C 98 5 5 HELIX 4 AA4 THR C 99 ARG C 106 1 8 HELIX 5 AA5 ASP C 145 GLY C 152 1 8 SHEET 1 AA1 4 THR C 51 ILE C 52 0 SHEET 2 AA1 4 THR C 211 ALA C 220 -1 O ALA C 218 N THR C 51 SHEET 3 AA1 4 TYR C 108 PHE C 121 -1 N THR C 118 O LEU C 217 SHEET 4 AA1 4 SER C 164 ILE C 172 -1 O LEU C 167 N VAL C 117 SHEET 1 AA2 4 CYS C 70 SER C 74 0 SHEET 2 AA2 4 THR C 211 ALA C 220 -1 O ILE C 214 N PHE C 71 SHEET 3 AA2 4 TYR C 108 PHE C 121 -1 N THR C 118 O LEU C 217 SHEET 4 AA2 4 THR C 225 CYS C 229 -1 O LEU C 228 N THR C 109 SHEET 1 AA3 4 LEU C 82 ARG C 87 0 SHEET 2 AA3 4 ILE C 193 TYR C 198 -1 O ILE C 196 N CYS C 83 SHEET 3 AA3 4 LYS C 130 THR C 136 -1 N LEU C 132 O TRP C 197 SHEET 4 AA3 4 THR C 153 ASP C 158 -1 O TRP C 157 N MET C 131 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.309017 -0.500000 -0.809017 0.00000 MTRIX2 2 0.500000 0.809017 -0.309017 0.00000 MTRIX3 2 0.809017 -0.309017 0.500000 0.00000 MTRIX1 3 -0.809017 -0.309017 -0.500000 0.00000 MTRIX2 3 0.309017 0.500000 -0.809017 0.00000 MTRIX3 3 0.500000 -0.809017 -0.309017 0.00000 MTRIX1 4 -0.809017 0.309017 0.500000 0.00000 MTRIX2 4 -0.309017 0.500000 -0.809017 0.00000 MTRIX3 4 -0.500000 -0.809017 -0.309017 0.00000 MTRIX1 5 0.309017 0.500000 0.809017 0.00000 MTRIX2 5 -0.500000 0.809017 -0.309017 0.00000 MTRIX3 5 -0.809017 -0.309017 0.500000 0.00000 MTRIX1 6 -1.000000 0.000000 0.000000 0.00000 MTRIX2 6 0.000000 1.000000 0.000000 0.00000 MTRIX3 6 0.000000 0.000000 -1.000000 0.00000 MTRIX1 7 -0.309017 0.500000 0.809017 0.00000 MTRIX2 7 0.500000 0.809017 -0.309017 0.00000 MTRIX3 7 -0.809017 0.309017 -0.500000 0.00000 MTRIX1 8 0.809017 0.309017 0.500000 0.00000 MTRIX2 8 0.309017 0.500000 -0.809017 0.00000 MTRIX3 8 -0.500000 0.809017 0.309017 0.00000 MTRIX1 9 0.809017 -0.309017 -0.500000 0.00000 MTRIX2 9 -0.309017 0.500000 -0.809017 0.00000 MTRIX3 9 0.500000 0.809017 0.309017 0.00000 MTRIX1 10 -0.309017 -0.500000 -0.809017 0.00000 MTRIX2 10 -0.500000 0.809017 -0.309017 0.00000 MTRIX3 10 0.809017 0.309017 -0.500000 0.00000 MTRIX1 11 -1.000000 0.000000 0.000000 0.00000 MTRIX2 11 0.000000 -1.000000 0.000000 0.00000 MTRIX3 11 0.000000 0.000000 1.000000 0.00000 MTRIX1 12 -0.309017 0.500000 0.809017 0.00000 MTRIX2 12 -0.500000 -0.809017 0.309017 0.00000 MTRIX3 12 0.809017 -0.309017 0.500000 0.00000 MTRIX1 13 0.809017 0.309017 0.500000 0.00000 MTRIX2 13 -0.309017 -0.500000 0.809017 0.00000 MTRIX3 13 0.500000 -0.809017 -0.309017 0.00000 MTRIX1 14 0.809017 -0.309017 -0.500000 0.00000 MTRIX2 14 0.309017 -0.500000 0.809017 0.00000 MTRIX3 14 -0.500000 -0.809017 -0.309017 0.00000 MTRIX1 15 -0.309017 -0.500000 -0.809017 0.00000 MTRIX2 15 0.500000 -0.809017 0.309017 0.00000 MTRIX3 15 -0.809017 -0.309017 0.500000 0.00000 MTRIX1 16 1.000000 0.000000 0.000000 0.00000 MTRIX2 16 0.000000 -1.000000 0.000000 0.00000 MTRIX3 16 0.000000 0.000000 -1.000000 0.00000 MTRIX1 17 0.309017 -0.500000 -0.809017 0.00000 MTRIX2 17 -0.500000 -0.809017 0.309017 0.00000 MTRIX3 17 -0.809017 0.309017 -0.500000 0.00000 MTRIX1 18 -0.809017 -0.309017 -0.500000 0.00000 MTRIX2 18 -0.309017 -0.500000 0.809017 0.00000 MTRIX3 18 -0.500000 0.809017 0.309017 0.00000 MTRIX1 19 -0.809017 0.309017 0.500000 0.00000 MTRIX2 19 0.309017 -0.500000 0.809017 0.00000 MTRIX3 19 0.500000 0.809017 0.309017 0.00000 MTRIX1 20 0.309017 0.500000 0.809017 0.00000 MTRIX2 20 0.500000 -0.809017 0.309017 0.00000 MTRIX3 20 0.809017 0.309017 -0.500000 0.00000 MTRIX1 21 0.000000 -1.000000 0.000000 0.00000 MTRIX2 21 0.000000 0.000000 -1.000000 0.00000 MTRIX3 21 1.000000 0.000000 0.000000 0.00000 MTRIX1 22 -0.500000 -0.809017 0.309017 0.00000 MTRIX2 22 -0.809017 0.309017 -0.500000 0.00000 MTRIX3 22 0.309017 -0.500000 -0.809017 0.00000 MTRIX1 23 -0.309017 -0.500000 0.809017 0.00000 MTRIX2 23 -0.500000 0.809017 0.309017 0.00000 MTRIX3 23 -0.809017 -0.309017 -0.500000 0.00000 MTRIX1 24 0.309017 -0.500000 0.809017 0.00000 MTRIX2 24 0.500000 0.809017 0.309017 0.00000 MTRIX3 24 -0.809017 0.309017 0.500000 0.00000 MTRIX1 25 0.500000 -0.809017 0.309017 0.00000 MTRIX2 25 0.809017 0.309017 -0.500000 0.00000 MTRIX3 25 0.309017 0.500000 0.809017 0.00000 MTRIX1 26 0.000000 -1.000000 0.000000 0.00000 MTRIX2 26 0.000000 0.000000 1.000000 0.00000 MTRIX3 26 -1.000000 0.000000 0.000000 0.00000 MTRIX1 27 -0.500000 -0.809017 0.309017 0.00000 MTRIX2 27 0.809017 -0.309017 0.500000 0.00000 MTRIX3 27 -0.309017 0.500000 0.809017 0.00000 MTRIX1 28 -0.309017 -0.500000 0.809017 0.00000 MTRIX2 28 0.500000 -0.809017 -0.309017 0.00000 MTRIX3 28 0.809017 0.309017 0.500000 0.00000 MTRIX1 29 0.309017 -0.500000 0.809017 0.00000 MTRIX2 29 -0.500000 -0.809017 -0.309017 0.00000 MTRIX3 29 0.809017 -0.309017 -0.500000 0.00000 MTRIX1 30 0.500000 -0.809017 0.309017 0.00000 MTRIX2 30 -0.809017 -0.309017 0.500000 0.00000 MTRIX3 30 -0.309017 -0.500000 -0.809017 0.00000 MTRIX1 31 0.000000 1.000000 0.000000 0.00000 MTRIX2 31 0.000000 0.000000 -1.000000 0.00000 MTRIX3 31 -1.000000 0.000000 0.000000 0.00000 MTRIX1 32 0.500000 0.809017 -0.309017 0.00000 MTRIX2 32 -0.809017 0.309017 -0.500000 0.00000 MTRIX3 32 -0.309017 0.500000 0.809017 0.00000 MTRIX1 33 0.309017 0.500000 -0.809017 0.00000 MTRIX2 33 -0.500000 0.809017 0.309017 0.00000 MTRIX3 33 0.809017 0.309017 0.500000 0.00000 MTRIX1 34 -0.309017 0.500000 -0.809017 0.00000 MTRIX2 34 0.500000 0.809017 0.309017 0.00000 MTRIX3 34 0.809017 -0.309017 -0.500000 0.00000 MTRIX1 35 -0.500000 0.809017 -0.309017 0.00000 MTRIX2 35 0.809017 0.309017 -0.500000 0.00000 MTRIX3 35 -0.309017 -0.500000 -0.809017 0.00000 MTRIX1 36 0.000000 1.000000 0.000000 0.00000 MTRIX2 36 0.000000 0.000000 1.000000 0.00000 MTRIX3 36 1.000000 0.000000 0.000000 0.00000 MTRIX1 37 0.500000 0.809017 -0.309017 0.00000 MTRIX2 37 0.809017 -0.309017 0.500000 0.00000 MTRIX3 37 0.309017 -0.500000 -0.809017 0.00000 MTRIX1 38 0.309017 0.500000 -0.809017 0.00000 MTRIX2 38 0.500000 -0.809017 -0.309017 0.00000 MTRIX3 38 -0.809017 -0.309017 -0.500000 0.00000 MTRIX1 39 -0.309017 0.500000 -0.809017 0.00000 MTRIX2 39 -0.500000 -0.809017 -0.309017 0.00000 MTRIX3 39 -0.809017 0.309017 0.500000 0.00000 MTRIX1 40 -0.500000 0.809017 -0.309017 0.00000 MTRIX2 40 -0.809017 -0.309017 0.500000 0.00000 MTRIX3 40 0.309017 0.500000 0.809017 0.00000 MTRIX1 41 0.000000 0.000000 1.000000 0.00000 MTRIX2 41 -1.000000 0.000000 0.000000 0.00000 MTRIX3 41 0.000000 -1.000000 0.000000 0.00000 MTRIX1 42 0.809017 -0.309017 0.500000 0.00000 MTRIX2 42 -0.309017 0.500000 0.809017 0.00000 MTRIX3 42 -0.500000 -0.809017 0.309017 0.00000 MTRIX1 43 0.500000 -0.809017 -0.309017 0.00000 MTRIX2 43 0.809017 0.309017 0.500000 0.00000 MTRIX3 43 -0.309017 -0.500000 0.809017 0.00000 MTRIX1 44 -0.500000 -0.809017 -0.309017 0.00000 MTRIX2 44 0.809017 -0.309017 -0.500000 0.00000 MTRIX3 44 0.309017 -0.500000 0.809017 0.00000 MTRIX1 45 -0.809017 -0.309017 0.500000 0.00000 MTRIX2 45 -0.309017 -0.500000 -0.809017 0.00000 MTRIX3 45 0.500000 -0.809017 0.309017 0.00000 MTRIX1 46 0.000000 0.000000 -1.000000 0.00000 MTRIX2 46 1.000000 0.000000 0.000000 0.00000 MTRIX3 46 0.000000 -1.000000 0.000000 0.00000 MTRIX1 47 -0.809017 0.309017 -0.500000 0.00000 MTRIX2 47 0.309017 -0.500000 -0.809017 0.00000 MTRIX3 47 -0.500000 -0.809017 0.309017 0.00000 MTRIX1 48 -0.500000 0.809017 0.309017 0.00000 MTRIX2 48 -0.809017 -0.309017 -0.500000 0.00000 MTRIX3 48 -0.309017 -0.500000 0.809017 0.00000 MTRIX1 49 0.500000 0.809017 0.309017 0.00000 MTRIX2 49 -0.809017 0.309017 0.500000 0.00000 MTRIX3 49 0.309017 -0.500000 0.809017 0.00000 MTRIX1 50 0.809017 0.309017 -0.500000 0.00000 MTRIX2 50 0.309017 0.500000 0.809017 0.00000 MTRIX3 50 0.500000 -0.809017 0.309017 0.00000 MTRIX1 51 0.000000 0.000000 1.000000 0.00000 MTRIX2 51 1.000000 0.000000 0.000000 0.00000 MTRIX3 51 0.000000 1.000000 0.000000 0.00000 MTRIX1 52 0.809017 -0.309017 0.500000 0.00000 MTRIX2 52 0.309017 -0.500000 -0.809017 0.00000 MTRIX3 52 0.500000 0.809017 -0.309017 0.00000 MTRIX1 53 0.500000 -0.809017 -0.309017 0.00000 MTRIX2 53 -0.809017 -0.309017 -0.500000 0.00000 MTRIX3 53 0.309017 0.500000 -0.809017 0.00000 MTRIX1 54 -0.500000 -0.809017 -0.309017 0.00000 MTRIX2 54 -0.809017 0.309017 0.500000 0.00000 MTRIX3 54 -0.309017 0.500000 -0.809017 0.00000 MTRIX1 55 -0.809017 -0.309017 0.500000 0.00000 MTRIX2 55 0.309017 0.500000 0.809017 0.00000 MTRIX3 55 -0.500000 0.809017 -0.309017 0.00000 MTRIX1 56 0.000000 0.000000 -1.000000 0.00000 MTRIX2 56 -1.000000 0.000000 0.000000 0.00000 MTRIX3 56 0.000000 1.000000 0.000000 0.00000 MTRIX1 57 -0.809017 0.309017 -0.500000 0.00000 MTRIX2 57 -0.309017 0.500000 0.809017 0.00000 MTRIX3 57 0.500000 0.809017 -0.309017 0.00000 MTRIX1 58 -0.500000 0.809017 0.309017 0.00000 MTRIX2 58 0.809017 0.309017 0.500000 0.00000 MTRIX3 58 0.309017 0.500000 -0.809017 0.00000 MTRIX1 59 0.500000 0.809017 0.309017 0.00000 MTRIX2 59 0.809017 -0.309017 -0.500000 0.00000 MTRIX3 59 -0.309017 0.500000 -0.809017 0.00000 MTRIX1 60 0.809017 0.309017 -0.500000 0.00000 MTRIX2 60 -0.309017 -0.500000 -0.809017 0.00000 MTRIX3 60 -0.500000 0.809017 -0.309017 0.00000