HEADER HYDROLASE 31-OCT-16 5TSP TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF CLOSTRIDIUM PERFRINGENS TITLE 2 NEURAMINIDASE (NANI) IN COMPLEX WITH A CHES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 243-694; COMPND 5 SYNONYM: NEURAMINIDASE, NANL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS ATCC 13124; SOURCE 3 ORGANISM_TAXID: 195103; SOURCE 4 STRAIN: ATCC 13124; SOURCE 5 GENE: NANI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEURAMINIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LEE,H.-S.YOUN,J.-G.LEE,J.Y.AN,K.R.PARK,J.Y.KANG,M.S.JIN,Y.B.RYU, AUTHOR 2 K.H.PARK,S.H.EOM REVDAT 3 08-NOV-23 5TSP 1 LINK REVDAT 2 19-APR-17 5TSP 1 JRNL REVDAT 1 29-MAR-17 5TSP 0 JRNL AUTH Y.LEE,H.-S.YOUN,J.-G.LEE,J.Y.AN,K.R.PARK,J.Y.KANG,Y.B.RYU, JRNL AUTH 2 M.S.JIN,K.H.PARK,S.H.EOM JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF CLOSTRIDIUM JRNL TITL 2 PERFRINGENS NEURAMINIDASE IN COMPLEX WITH A JRNL TITL 3 NON-CARBOHYDRATE-BASED INHIBITOR, JRNL TITL 4 2-(CYCLOHEXYLAMINO)ETHANESULFONIC ACID JRNL REF BIOCHEM. BIOPHYS. RES. V. 486 470 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28315686 JRNL DOI 10.1016/J.BBRC.2017.03.064 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 272513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 13756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2180 - 3.8492 0.98 8646 460 0.1419 0.1486 REMARK 3 2 3.8492 - 3.0558 1.00 8743 457 0.1356 0.1402 REMARK 3 3 3.0558 - 2.6697 1.00 8718 454 0.1548 0.1782 REMARK 3 4 2.6697 - 2.4257 1.00 8677 493 0.1523 0.1685 REMARK 3 5 2.4257 - 2.2518 1.00 8685 475 0.1479 0.1599 REMARK 3 6 2.2518 - 2.1191 1.00 8744 433 0.1443 0.1589 REMARK 3 7 2.1191 - 2.0130 1.00 8700 444 0.1371 0.1477 REMARK 3 8 2.0130 - 1.9254 1.00 8665 473 0.1424 0.1507 REMARK 3 9 1.9254 - 1.8512 1.00 8689 454 0.1427 0.1676 REMARK 3 10 1.8512 - 1.7874 1.00 8683 441 0.1414 0.1509 REMARK 3 11 1.7874 - 1.7315 1.00 8664 492 0.1400 0.1551 REMARK 3 12 1.7315 - 1.6820 1.00 8704 445 0.1364 0.1534 REMARK 3 13 1.6820 - 1.6377 1.00 8674 451 0.1325 0.1644 REMARK 3 14 1.6377 - 1.5977 1.00 8667 477 0.1334 0.1471 REMARK 3 15 1.5977 - 1.5614 1.00 8608 472 0.1380 0.1510 REMARK 3 16 1.5614 - 1.5282 1.00 8697 467 0.1350 0.1545 REMARK 3 17 1.5282 - 1.4976 1.00 8646 444 0.1378 0.1495 REMARK 3 18 1.4976 - 1.4694 1.00 8569 472 0.1414 0.1553 REMARK 3 19 1.4694 - 1.4431 0.99 8611 451 0.1428 0.1586 REMARK 3 20 1.4431 - 1.4187 0.99 8629 473 0.1444 0.1486 REMARK 3 21 1.4187 - 1.3958 1.00 8611 447 0.1481 0.1795 REMARK 3 22 1.3958 - 1.3743 0.99 8623 490 0.1502 0.1596 REMARK 3 23 1.3743 - 1.3541 0.99 8534 462 0.1465 0.1666 REMARK 3 24 1.3541 - 1.3350 0.99 8574 480 0.1509 0.1623 REMARK 3 25 1.3350 - 1.3170 0.99 8534 453 0.1468 0.1534 REMARK 3 26 1.3170 - 1.2999 0.99 8678 415 0.1560 0.1780 REMARK 3 27 1.2999 - 1.2836 0.99 8473 462 0.1595 0.1675 REMARK 3 28 1.2836 - 1.2682 0.99 8520 482 0.1611 0.1754 REMARK 3 29 1.2682 - 1.2534 0.99 8608 422 0.1647 0.1874 REMARK 3 30 1.2534 - 1.2393 0.94 8183 415 0.1642 0.1830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7473 REMARK 3 ANGLE : 1.205 10139 REMARK 3 CHIRALITY : 0.085 1072 REMARK 3 PLANARITY : 0.006 1338 REMARK 3 DIHEDRAL : 12.681 2809 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000213634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 272513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2VK5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.00350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 242 REMARK 465 GLY A 691 REMARK 465 ALA A 692 REMARK 465 ASN A 693 REMARK 465 LYS A 694 REMARK 465 LEU A 695 REMARK 465 GLU A 696 REMARK 465 HIS A 697 REMARK 465 HIS A 698 REMARK 465 HIS A 699 REMARK 465 HIS A 700 REMARK 465 HIS A 701 REMARK 465 HIS A 702 REMARK 465 MET B 242 REMARK 465 GLY B 691 REMARK 465 ALA B 692 REMARK 465 ASN B 693 REMARK 465 LYS B 694 REMARK 465 LEU B 695 REMARK 465 GLU B 696 REMARK 465 HIS B 697 REMARK 465 HIS B 698 REMARK 465 HIS B 699 REMARK 465 HIS B 700 REMARK 465 HIS B 701 REMARK 465 HIS B 702 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 408 O HOH A 1101 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 408 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 267 75.23 77.54 REMARK 500 ASN A 294 49.93 -88.84 REMARK 500 ASP A 319 114.69 -161.05 REMARK 500 ASP A 328 90.90 78.76 REMARK 500 LYS A 350 -6.30 85.95 REMARK 500 ASP A 414 -161.03 -171.52 REMARK 500 LYS A 459 -71.78 -93.26 REMARK 500 THR A 538 -122.17 -123.53 REMARK 500 PRO A 586 38.61 -91.31 REMARK 500 TYR A 587 65.57 63.34 REMARK 500 ALA A 654 -113.10 -122.02 REMARK 500 SER A 675 29.88 -161.59 REMARK 500 SER A 675 29.72 -161.59 REMARK 500 GLU A 676 -103.37 -118.27 REMARK 500 GLU A 676 -92.31 -121.89 REMARK 500 ILE B 267 75.36 77.94 REMARK 500 ASP B 328 89.66 79.36 REMARK 500 LYS B 350 -7.61 87.76 REMARK 500 ASP B 414 -160.07 -172.95 REMARK 500 LYS B 459 -71.06 -92.16 REMARK 500 THR B 538 -122.46 -123.63 REMARK 500 PRO B 586 39.32 -93.29 REMARK 500 TYR B 587 65.52 63.72 REMARK 500 ALA B 654 -113.07 -119.35 REMARK 500 SER B 675 29.68 -159.97 REMARK 500 GLU B 676 -96.50 -120.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1986 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1987 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2042 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B2043 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2044 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B2045 DISTANCE = 6.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 296 OD2 REMARK 620 2 ASP A 298 OD2 104.2 REMARK 620 3 ASP A 319 OD2 171.2 81.1 REMARK 620 4 TYR A 320 O 97.9 134.1 82.8 REMARK 620 5 HOH A1172 O 89.3 76.4 85.1 144.1 REMARK 620 6 HOH A1303 O 79.6 148.7 92.2 74.3 72.5 REMARK 620 7 HOH A1313 O 83.1 70.3 105.4 73.2 142.7 140.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 296 OD2 REMARK 620 2 ASP B 298 OD2 105.1 REMARK 620 3 ASP B 319 OD1 170.0 81.7 REMARK 620 4 TYR B 320 O 97.6 133.4 82.3 REMARK 620 5 HOH B1172 O 89.7 77.3 84.6 143.7 REMARK 620 6 HOH B1213 O 78.5 148.9 91.9 75.0 71.7 REMARK 620 7 HOH B1328 O 82.4 70.3 107.0 73.1 143.2 140.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1002 DBREF1 5TSP A 243 694 UNP A0A0H2YQR1_CLOP1 DBREF2 5TSP A A0A0H2YQR1 243 694 DBREF1 5TSP B 243 694 UNP A0A0H2YQR1_CLOP1 DBREF2 5TSP B A0A0H2YQR1 243 694 SEQADV 5TSP MET A 242 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP LEU A 695 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP GLU A 696 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS A 697 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS A 698 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS A 699 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS A 700 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS A 701 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS A 702 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP MET B 242 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP LEU B 695 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP GLU B 696 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS B 697 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS B 698 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS B 699 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS B 700 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS B 701 UNP A0A0H2YQR EXPRESSION TAG SEQADV 5TSP HIS B 702 UNP A0A0H2YQR EXPRESSION TAG SEQRES 1 A 461 MET VAL GLU GLY ALA VAL LYS THR GLU PRO VAL ASP LEU SEQRES 2 A 461 PHE HIS PRO GLY PHE LEU ASN SER SER ASN TYR ARG ILE SEQRES 3 A 461 PRO ALA LEU PHE LYS THR LYS GLU GLY THR LEU ILE ALA SEQRES 4 A 461 SER ILE ASP ALA ARG ARG GLN GLY GLY ALA ASP ALA PRO SEQRES 5 A 461 ASN ASN ASP ILE ASP THR ALA VAL ARG ARG SER GLU ASP SEQRES 6 A 461 GLY GLY LYS THR TRP ASP GLU GLY GLN ILE ILE MET ASP SEQRES 7 A 461 TYR PRO ASP LYS SER SER VAL ILE ASP THR THR LEU ILE SEQRES 8 A 461 GLN ASP ASP GLU THR GLY ARG ILE PHE LEU LEU VAL THR SEQRES 9 A 461 HIS PHE PRO SER LYS TYR GLY PHE TRP ASN ALA GLY LEU SEQRES 10 A 461 GLY SER GLY PHE LYS ASN ILE ASP GLY LYS GLU TYR LEU SEQRES 11 A 461 CYS LEU TYR ASP SER SER GLY LYS GLU PHE THR VAL ARG SEQRES 12 A 461 GLU ASN VAL VAL TYR ASP LYS ASP GLY ASN LYS THR GLU SEQRES 13 A 461 TYR THR THR ASN ALA LEU GLY ASP LEU PHE ARG ASN GLY SEQRES 14 A 461 THR LYS ILE ASP ASN ILE ASN SER SER THR ALA PRO LEU SEQRES 15 A 461 LYS ALA LYS GLY THR SER TYR ILE ASN LEU VAL TYR SER SEQRES 16 A 461 ASP ASP ASP GLY LYS THR TRP SER GLU PRO GLN ASN ILE SEQRES 17 A 461 ASN PHE GLN VAL LYS LYS ASP TRP MET LYS PHE LEU GLY SEQRES 18 A 461 ILE ALA PRO GLY ARG GLY ILE GLN ILE LYS ASN GLY GLU SEQRES 19 A 461 HIS LYS GLY ARG ILE VAL VAL PRO VAL TYR TYR THR ASN SEQRES 20 A 461 GLU LYS GLY LYS GLN SER SER ALA VAL ILE TYR SER ASP SEQRES 21 A 461 ASP SER GLY LYS ASN TRP THR ILE GLY GLU SER PRO ASN SEQRES 22 A 461 ASP ASN ARG LYS LEU GLU ASN GLY LYS ILE ILE ASN SER SEQRES 23 A 461 LYS THR LEU SER ASP ASP ALA PRO GLN LEU THR GLU CYS SEQRES 24 A 461 GLN VAL VAL GLU MET PRO ASN GLY GLN LEU LYS LEU PHE SEQRES 25 A 461 MET ARG ASN LEU SER GLY TYR LEU ASN ILE ALA THR SER SEQRES 26 A 461 PHE ASP GLY GLY ALA THR TRP ASP GLU THR VAL GLU LYS SEQRES 27 A 461 ASP THR ASN VAL LEU GLU PRO TYR CYS GLN LEU SER VAL SEQRES 28 A 461 ILE ASN TYR SER GLN LYS ILE ASP GLY LYS ASP ALA VAL SEQRES 29 A 461 ILE PHE SER ASN PRO ASN ALA ARG SER ARG SER ASN GLY SEQRES 30 A 461 THR VAL ARG ILE GLY LEU ILE ASN GLN VAL GLY THR TYR SEQRES 31 A 461 GLU ASN GLY GLU PRO LYS TYR GLU PHE ASP TRP LYS TYR SEQRES 32 A 461 ASN LYS LEU VAL LYS PRO GLY TYR TYR ALA TYR SER CYS SEQRES 33 A 461 LEU THR GLU LEU SER ASN GLY ASN ILE GLY LEU LEU TYR SEQRES 34 A 461 GLU GLY THR PRO SER GLU GLU MET SER TYR ILE GLU MET SEQRES 35 A 461 ASN LEU LYS TYR LEU GLU SER GLY ALA ASN LYS LEU GLU SEQRES 36 A 461 HIS HIS HIS HIS HIS HIS SEQRES 1 B 461 MET VAL GLU GLY ALA VAL LYS THR GLU PRO VAL ASP LEU SEQRES 2 B 461 PHE HIS PRO GLY PHE LEU ASN SER SER ASN TYR ARG ILE SEQRES 3 B 461 PRO ALA LEU PHE LYS THR LYS GLU GLY THR LEU ILE ALA SEQRES 4 B 461 SER ILE ASP ALA ARG ARG GLN GLY GLY ALA ASP ALA PRO SEQRES 5 B 461 ASN ASN ASP ILE ASP THR ALA VAL ARG ARG SER GLU ASP SEQRES 6 B 461 GLY GLY LYS THR TRP ASP GLU GLY GLN ILE ILE MET ASP SEQRES 7 B 461 TYR PRO ASP LYS SER SER VAL ILE ASP THR THR LEU ILE SEQRES 8 B 461 GLN ASP ASP GLU THR GLY ARG ILE PHE LEU LEU VAL THR SEQRES 9 B 461 HIS PHE PRO SER LYS TYR GLY PHE TRP ASN ALA GLY LEU SEQRES 10 B 461 GLY SER GLY PHE LYS ASN ILE ASP GLY LYS GLU TYR LEU SEQRES 11 B 461 CYS LEU TYR ASP SER SER GLY LYS GLU PHE THR VAL ARG SEQRES 12 B 461 GLU ASN VAL VAL TYR ASP LYS ASP GLY ASN LYS THR GLU SEQRES 13 B 461 TYR THR THR ASN ALA LEU GLY ASP LEU PHE ARG ASN GLY SEQRES 14 B 461 THR LYS ILE ASP ASN ILE ASN SER SER THR ALA PRO LEU SEQRES 15 B 461 LYS ALA LYS GLY THR SER TYR ILE ASN LEU VAL TYR SER SEQRES 16 B 461 ASP ASP ASP GLY LYS THR TRP SER GLU PRO GLN ASN ILE SEQRES 17 B 461 ASN PHE GLN VAL LYS LYS ASP TRP MET LYS PHE LEU GLY SEQRES 18 B 461 ILE ALA PRO GLY ARG GLY ILE GLN ILE LYS ASN GLY GLU SEQRES 19 B 461 HIS LYS GLY ARG ILE VAL VAL PRO VAL TYR TYR THR ASN SEQRES 20 B 461 GLU LYS GLY LYS GLN SER SER ALA VAL ILE TYR SER ASP SEQRES 21 B 461 ASP SER GLY LYS ASN TRP THR ILE GLY GLU SER PRO ASN SEQRES 22 B 461 ASP ASN ARG LYS LEU GLU ASN GLY LYS ILE ILE ASN SER SEQRES 23 B 461 LYS THR LEU SER ASP ASP ALA PRO GLN LEU THR GLU CYS SEQRES 24 B 461 GLN VAL VAL GLU MET PRO ASN GLY GLN LEU LYS LEU PHE SEQRES 25 B 461 MET ARG ASN LEU SER GLY TYR LEU ASN ILE ALA THR SER SEQRES 26 B 461 PHE ASP GLY GLY ALA THR TRP ASP GLU THR VAL GLU LYS SEQRES 27 B 461 ASP THR ASN VAL LEU GLU PRO TYR CYS GLN LEU SER VAL SEQRES 28 B 461 ILE ASN TYR SER GLN LYS ILE ASP GLY LYS ASP ALA VAL SEQRES 29 B 461 ILE PHE SER ASN PRO ASN ALA ARG SER ARG SER ASN GLY SEQRES 30 B 461 THR VAL ARG ILE GLY LEU ILE ASN GLN VAL GLY THR TYR SEQRES 31 B 461 GLU ASN GLY GLU PRO LYS TYR GLU PHE ASP TRP LYS TYR SEQRES 32 B 461 ASN LYS LEU VAL LYS PRO GLY TYR TYR ALA TYR SER CYS SEQRES 33 B 461 LEU THR GLU LEU SER ASN GLY ASN ILE GLY LEU LEU TYR SEQRES 34 B 461 GLU GLY THR PRO SER GLU GLU MET SER TYR ILE GLU MET SEQRES 35 B 461 ASN LEU LYS TYR LEU GLU SER GLY ALA ASN LYS LEU GLU SEQRES 36 B 461 HIS HIS HIS HIS HIS HIS HET NHE A1001 13 HET CA A1002 1 HET NHE B1001 13 HET CA B1002 1 HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM CA CALCIUM ION HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 3 NHE 2(C8 H17 N O3 S) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *1832(H2 O) HELIX 1 AA1 GLY A 258 SER A 262 5 5 HELIX 2 AA2 ILE A 449 LYS A 454 1 6 HELIX 3 AA3 ASN A 684 SER A 690 1 7 HELIX 4 AA4 GLY B 258 SER B 262 5 5 HELIX 5 AA5 ILE B 449 LYS B 454 1 6 HELIX 6 AA6 ASN B 684 GLU B 689 1 6 SHEET 1 AA1 4 VAL A 252 PHE A 255 0 SHEET 2 AA1 4 MET A 678 MET A 683 -1 O MET A 678 N PHE A 255 SHEET 3 AA1 4 ILE A 666 TYR A 670 -1 N ILE A 666 O MET A 683 SHEET 4 AA1 4 SER A 656 GLU A 660 -1 N THR A 659 O GLY A 667 SHEET 1 AA2 4 ASN A 264 LYS A 272 0 SHEET 2 AA2 4 LEU A 278 ARG A 285 -1 O ASP A 283 N ARG A 266 SHEET 3 AA2 4 ILE A 297 SER A 304 -1 O ASP A 298 N ALA A 284 SHEET 4 AA2 4 GLN A 315 MET A 318 -1 O ILE A 317 N THR A 299 SHEET 1 AA3 5 GLN A 447 ASN A 448 0 SHEET 2 AA3 5 TYR A 430 SER A 436 -1 N LEU A 433 O GLN A 447 SHEET 3 AA3 5 ILE A 340 PHE A 347 -1 N HIS A 346 O TYR A 430 SHEET 4 AA3 5 SER A 325 GLN A 333 -1 N ILE A 332 O PHE A 341 SHEET 5 AA3 5 GLY A 466 ARG A 467 1 O GLY A 466 N THR A 329 SHEET 1 AA4 7 PHE A 362 ILE A 365 0 SHEET 2 AA4 7 LYS A 368 TYR A 374 -1 O TYR A 370 N LYS A 363 SHEET 3 AA4 7 GLU A 380 ARG A 384 -1 O PHE A 381 N LEU A 373 SHEET 4 AA4 7 VAL A 387 TYR A 389 -1 O TYR A 389 N THR A 382 SHEET 5 AA4 7 LYS A 395 THR A 400 -1 O TYR A 398 N VAL A 388 SHEET 6 AA4 7 ASP A 405 ARG A 408 -1 O PHE A 407 N THR A 399 SHEET 7 AA4 7 THR A 411 ASN A 415 -1 O ILE A 413 N LEU A 406 SHEET 1 AA5 3 PHE A 362 ILE A 365 0 SHEET 2 AA5 3 LYS A 368 TYR A 374 -1 O TYR A 370 N LYS A 363 SHEET 3 AA5 3 LYS A 424 ALA A 425 -1 O LYS A 424 N TYR A 374 SHEET 1 AA6 3 LEU A 461 ILE A 463 0 SHEET 2 AA6 3 ILE A 480 THR A 487 -1 O TYR A 485 N GLY A 462 SHEET 3 AA6 3 ILE A 469 GLN A 470 -1 N ILE A 469 O VAL A 481 SHEET 1 AA7 4 LEU A 461 ILE A 463 0 SHEET 2 AA7 4 ILE A 480 THR A 487 -1 O TYR A 485 N GLY A 462 SHEET 3 AA7 4 GLN A 493 SER A 500 -1 O ILE A 498 N VAL A 482 SHEET 4 AA7 4 THR A 508 ILE A 509 -1 O THR A 508 N TYR A 499 SHEET 1 AA8 2 ARG A 517 LYS A 518 0 SHEET 2 AA8 2 ILE A 524 ILE A 525 -1 O ILE A 525 N ARG A 517 SHEET 1 AA9 4 LEU A 537 GLU A 544 0 SHEET 2 AA9 4 LEU A 550 ASN A 556 -1 O ARG A 555 N GLU A 539 SHEET 3 AA9 4 TYR A 560 SER A 566 -1 O ASN A 562 N MET A 554 SHEET 4 AA9 4 GLU A 578 LEU A 584 -1 O VAL A 583 N LEU A 561 SHEET 1 AB1 4 SER A 591 ASN A 594 0 SHEET 2 AB1 4 ALA A 604 PRO A 610 -1 O SER A 608 N SER A 591 SHEET 3 AB1 4 SER A 616 THR A 630 -1 O ARG A 621 N PHE A 607 SHEET 4 AB1 4 PRO A 636 TYR A 652 -1 O VAL A 648 N GLY A 618 SHEET 1 AB2 4 VAL B 252 PHE B 255 0 SHEET 2 AB2 4 MET B 678 MET B 683 -1 O MET B 678 N PHE B 255 SHEET 3 AB2 4 ILE B 666 GLU B 671 -1 N ILE B 666 O MET B 683 SHEET 4 AB2 4 SER B 656 GLU B 660 -1 N THR B 659 O GLY B 667 SHEET 1 AB3 4 ASN B 264 LYS B 272 0 SHEET 2 AB3 4 LEU B 278 ARG B 285 -1 O ASP B 283 N ARG B 266 SHEET 3 AB3 4 ILE B 297 SER B 304 -1 O ASP B 298 N ALA B 284 SHEET 4 AB3 4 GLN B 315 MET B 318 -1 O ILE B 317 N THR B 299 SHEET 1 AB4 5 GLN B 447 ASN B 448 0 SHEET 2 AB4 5 TYR B 430 SER B 436 -1 N LEU B 433 O GLN B 447 SHEET 3 AB4 5 ILE B 340 PHE B 347 -1 N HIS B 346 O TYR B 430 SHEET 4 AB4 5 SER B 325 GLN B 333 -1 N ILE B 332 O PHE B 341 SHEET 5 AB4 5 GLY B 466 ARG B 467 1 O GLY B 466 N THR B 329 SHEET 1 AB5 7 PHE B 362 ILE B 365 0 SHEET 2 AB5 7 LYS B 368 TYR B 374 -1 O TYR B 370 N LYS B 363 SHEET 3 AB5 7 GLU B 380 ARG B 384 -1 O PHE B 381 N LEU B 373 SHEET 4 AB5 7 VAL B 387 TYR B 389 -1 O VAL B 387 N ARG B 384 SHEET 5 AB5 7 LYS B 395 THR B 400 -1 O THR B 396 N VAL B 388 SHEET 6 AB5 7 ASP B 405 ARG B 408 -1 O PHE B 407 N THR B 399 SHEET 7 AB5 7 THR B 411 ASN B 415 -1 O ILE B 413 N LEU B 406 SHEET 1 AB6 3 PHE B 362 ILE B 365 0 SHEET 2 AB6 3 LYS B 368 TYR B 374 -1 O TYR B 370 N LYS B 363 SHEET 3 AB6 3 LYS B 424 ALA B 425 -1 O LYS B 424 N TYR B 374 SHEET 1 AB7 3 LEU B 461 ILE B 463 0 SHEET 2 AB7 3 ILE B 480 THR B 487 -1 O TYR B 485 N GLY B 462 SHEET 3 AB7 3 ILE B 469 GLN B 470 -1 N ILE B 469 O VAL B 481 SHEET 1 AB8 4 LEU B 461 ILE B 463 0 SHEET 2 AB8 4 ILE B 480 THR B 487 -1 O TYR B 485 N GLY B 462 SHEET 3 AB8 4 GLN B 493 SER B 500 -1 O ILE B 498 N VAL B 482 SHEET 4 AB8 4 THR B 508 ILE B 509 -1 O THR B 508 N TYR B 499 SHEET 1 AB9 2 ARG B 517 LYS B 518 0 SHEET 2 AB9 2 ILE B 524 ILE B 525 -1 O ILE B 525 N ARG B 517 SHEET 1 AC1 4 LEU B 537 GLU B 544 0 SHEET 2 AC1 4 LEU B 550 ASN B 556 -1 O ARG B 555 N GLU B 539 SHEET 3 AC1 4 TYR B 560 SER B 566 -1 O ASN B 562 N MET B 554 SHEET 4 AC1 4 GLU B 578 LEU B 584 -1 O GLU B 578 N ILE B 563 SHEET 1 AC2 4 SER B 591 ASN B 594 0 SHEET 2 AC2 4 ALA B 604 PRO B 610 -1 O SER B 608 N SER B 591 SHEET 3 AC2 4 SER B 616 THR B 630 -1 O ARG B 621 N PHE B 607 SHEET 4 AC2 4 PRO B 636 TYR B 652 -1 O VAL B 648 N GLY B 618 LINK OD2 ASP A 296 CA CA A1002 1555 1555 2.33 LINK OD2 ASP A 298 CA CA A1002 1555 1555 2.40 LINK OD2 ASP A 319 CA CA A1002 1555 1555 2.33 LINK O TYR A 320 CA CA A1002 1555 1555 2.38 LINK CA CA A1002 O HOH A1172 1555 1555 2.44 LINK CA CA A1002 O HOH A1303 1555 1555 2.48 LINK CA CA A1002 O HOH A1313 1555 1555 2.46 LINK OD2 ASP B 296 CA CA B1002 1555 1555 2.33 LINK OD2 ASP B 298 CA CA B1002 1555 1555 2.39 LINK OD1 ASP B 319 CA CA B1002 1555 1555 2.33 LINK O TYR B 320 CA CA B1002 1555 1555 2.38 LINK CA CA B1002 O HOH B1172 1555 1555 2.42 LINK CA CA B1002 O HOH B1213 1555 1555 2.50 LINK CA CA B1002 O HOH B1328 1555 1555 2.44 CISPEP 1 ALA A 292 PRO A 293 0 7.35 CISPEP 2 ALA B 292 PRO B 293 0 9.14 SITE 1 AC1 11 ARG A 266 ASP A 291 ILE A 327 ASP A 328 SITE 2 AC1 11 PHE A 353 TYR A 485 ARG A 555 ARG A 615 SITE 3 AC1 11 TYR A 655 HOH A1142 HOH A1629 SITE 1 AC2 7 ASP A 296 ASP A 298 ASP A 319 TYR A 320 SITE 2 AC2 7 HOH A1172 HOH A1303 HOH A1313 SITE 1 AC3 13 ARG B 266 ASP B 291 ILE B 327 ASP B 328 SITE 2 AC3 13 PHE B 353 PHE B 460 TYR B 485 ARG B 555 SITE 3 AC3 13 ARG B 615 TYR B 655 HOH B1148 HOH B1241 SITE 4 AC3 13 HOH B1636 SITE 1 AC4 7 ASP B 296 ASP B 298 ASP B 319 TYR B 320 SITE 2 AC4 7 HOH B1172 HOH B1213 HOH B1328 CRYST1 69.386 98.007 72.648 90.00 90.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014412 0.000000 0.000248 0.00000 SCALE2 0.000000 0.010203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013767 0.00000