HEADER TRANSPORT PROTEIN 10-NOV-16 5TVZ TITLE SOLUTION NMR STRUCTURE OF SACCHAROMYCES CEREVISIAE POM152 IG-LIKE TITLE 2 REPEAT, RESIDUES 718-820 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN POM152; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 718-820; COMPND 5 SYNONYM: NUCLEAR PORE PROTEIN POM152,P150,PORE MEMBRANE PROTEIN COMPND 6 POM152; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: NUCLEAR PORE COMPLEX ASSEMBLY: PORE MEMBRANE PROTEIN COMPND 9 (POM) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: POM152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUSRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PSGX3_BC (MODIFIED PET26B) KEYWDS NUCLEAR PORE COMPLEX, IG-LIKE FOLD, NUCLEAR ENVELOPE MEMBRANE, KEYWDS 2 CADHERIN LIKE FOLD, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.DUTTA,P.SAMPATHKUMAR,D.COWBURN,S.C.ALMO,M.P.ROUT,J.FERNANDEZ- AUTHOR 2 MARTINEZ REVDAT 5 14-JUN-23 5TVZ 1 REMARK REVDAT 4 01-JAN-20 5TVZ 1 REMARK REVDAT 3 27-SEP-17 5TVZ 1 REMARK REVDAT 2 29-MAR-17 5TVZ 1 JRNL REVDAT 1 22-FEB-17 5TVZ 0 JRNL AUTH P.UPLA,S.J.KIM,P.SAMPATHKUMAR,K.DUTTA,S.M.CAHILL, JRNL AUTH 2 I.E.CHEMMAMA,R.WILLIAMS,J.B.BONANNO,W.J.RICE,D.L.STOKES, JRNL AUTH 3 D.COWBURN,S.C.ALMO,A.SALI,M.P.ROUT,J.FERNANDEZ-MARTINEZ JRNL TITL MOLECULAR ARCHITECTURE OF THE MAJOR MEMBRANE RING COMPONENT JRNL TITL 2 OF THE NUCLEAR PORE COMPLEX. JRNL REF STRUCTURE V. 25 434 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28162953 JRNL DOI 10.1016/J.STR.2017.01.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224838. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 235 UM [U-100% 13C; U-100% 15N] REMARK 210 POM152, 90% H2O/10% D2O; 402 UM REMARK 210 [U-100% 13C; U-100% 15N] POM152, REMARK 210 90% H2O/10% D2O; 300 UM [U-100% REMARK 210 13C; U-100% 15N] POM152, 90% H2O/ REMARK 210 10% D2O; 1.2 MM [U-100% 13C; U- REMARK 210 100% 15N] POM152, 90% H2O/10% REMARK 210 D2O; 324 UM [U-100% 13C; U-100% REMARK 210 15N] POM152, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACO; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 1H-15N NOESY; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ARIA, NMRPIPE, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2048 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 715 REMARK 465 SER A 716 REMARK 465 LEU A 717 REMARK 465 GLU A 821 REMARK 465 GLY A 822 REMARK 465 HIS A 823 REMARK 465 HIS A 824 REMARK 465 HIS A 825 REMARK 465 HIS A 826 REMARK 465 HIS A 827 REMARK 465 HIS A 828 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 730 HZ1 LYS A 732 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 722 -146.42 -176.77 REMARK 500 1 HIS A 728 42.93 -104.78 REMARK 500 1 HIS A 729 -177.21 -179.45 REMARK 500 1 SER A 762 -80.75 -169.05 REMARK 500 1 SER A 763 27.04 -166.86 REMARK 500 1 THR A 775 -69.99 -95.74 REMARK 500 1 ASN A 776 4.43 82.78 REMARK 500 1 GLU A 777 85.80 -160.88 REMARK 500 2 SER A 722 -148.50 -176.66 REMARK 500 2 PRO A 750 99.86 -67.23 REMARK 500 2 SER A 762 -87.03 -124.81 REMARK 500 2 SER A 763 -12.75 177.04 REMARK 500 2 THR A 775 -82.32 -95.85 REMARK 500 2 ASN A 776 3.64 89.08 REMARK 500 2 GLU A 777 82.94 -160.88 REMARK 500 2 THR A 786 30.65 -90.59 REMARK 500 3 SER A 722 -154.37 -174.76 REMARK 500 3 HIS A 728 52.32 -115.56 REMARK 500 3 HIS A 729 -177.91 -175.92 REMARK 500 3 PRO A 750 94.91 -65.87 REMARK 500 3 SER A 762 -96.10 -146.80 REMARK 500 3 SER A 763 55.73 -156.06 REMARK 500 3 THR A 775 -81.39 -96.11 REMARK 500 3 ASN A 776 4.18 93.79 REMARK 500 3 GLU A 777 87.96 -161.11 REMARK 500 4 SER A 722 -150.15 -176.71 REMARK 500 4 HIS A 728 -85.14 -86.08 REMARK 500 4 PRO A 750 94.41 -68.47 REMARK 500 4 SER A 762 -102.09 -126.06 REMARK 500 4 SER A 763 15.44 -156.24 REMARK 500 4 THR A 775 -72.25 -96.62 REMARK 500 4 ASN A 776 6.37 85.43 REMARK 500 4 GLU A 777 93.46 -162.10 REMARK 500 4 THR A 786 31.71 -82.23 REMARK 500 4 SER A 797 177.26 178.46 REMARK 500 5 VAL A 719 -167.98 -129.53 REMARK 500 5 SER A 722 -153.04 -175.90 REMARK 500 5 HIS A 729 -177.91 -177.77 REMARK 500 5 SER A 762 -96.69 -141.19 REMARK 500 5 SER A 763 0.68 -167.62 REMARK 500 5 THR A 775 -73.25 -95.90 REMARK 500 5 ASN A 776 5.59 88.14 REMARK 500 5 GLU A 777 100.47 -161.94 REMARK 500 5 THR A 786 31.49 -84.71 REMARK 500 6 SER A 722 -150.58 -176.25 REMARK 500 6 PRO A 750 94.39 -67.95 REMARK 500 6 SER A 762 -97.87 -150.43 REMARK 500 6 SER A 763 31.01 -167.15 REMARK 500 6 LYS A 764 73.35 -105.06 REMARK 500 6 THR A 775 -73.57 -96.06 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30201 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF NYSGRC-2016 DBREF 5TVZ A 718 820 UNP P39685 PO152_YEAST 718 820 SEQADV 5TVZ MET A 715 UNP P39685 EXPRESSION TAG SEQADV 5TVZ SER A 716 UNP P39685 EXPRESSION TAG SEQADV 5TVZ LEU A 717 UNP P39685 EXPRESSION TAG SEQADV 5TVZ GLU A 821 UNP P39685 EXPRESSION TAG SEQADV 5TVZ GLY A 822 UNP P39685 EXPRESSION TAG SEQADV 5TVZ HIS A 823 UNP P39685 EXPRESSION TAG SEQADV 5TVZ HIS A 824 UNP P39685 EXPRESSION TAG SEQADV 5TVZ HIS A 825 UNP P39685 EXPRESSION TAG SEQADV 5TVZ HIS A 826 UNP P39685 EXPRESSION TAG SEQADV 5TVZ HIS A 827 UNP P39685 EXPRESSION TAG SEQADV 5TVZ HIS A 828 UNP P39685 EXPRESSION TAG SEQRES 1 A 114 MET SER LEU ARG VAL LYS PRO SER ALA SER LEU LYS LEU SEQRES 2 A 114 HIS HIS ASP LEU LYS LEU CYS LEU GLY ASP HIS SER SER SEQRES 3 A 114 VAL PRO VAL ALA LEU LYS GLY GLN GLY PRO PHE THR LEU SEQRES 4 A 114 THR TYR ASP ILE ILE GLU THR PHE SER SER LYS ARG LYS SEQRES 5 A 114 THR PHE GLU ILE LYS GLU ILE LYS THR ASN GLU TYR VAL SEQRES 6 A 114 ILE LYS THR PRO VAL PHE THR THR GLY GLY ASP TYR ILE SEQRES 7 A 114 LEU SER LEU VAL SER ILE LYS ASP SER THR GLY CYS VAL SEQRES 8 A 114 VAL GLY LEU SER GLN PRO ASP ALA LYS ILE GLN VAL ARG SEQRES 9 A 114 ARG ASP GLU GLY HIS HIS HIS HIS HIS HIS SHEET 1 AA1 3 SER A 722 LEU A 725 0 SHEET 2 AA1 3 ASP A 737 LYS A 746 -1 O LYS A 746 N SER A 722 SHEET 3 AA1 3 TYR A 778 PHE A 785 -1 O TYR A 778 N VAL A 743 SHEET 1 AA2 5 ASP A 730 LEU A 733 0 SHEET 2 AA2 5 ALA A 813 VAL A 817 1 O GLN A 816 N LEU A 733 SHEET 3 AA2 5 ASP A 790 ASP A 800 -1 N TYR A 791 O ILE A 815 SHEET 4 AA2 5 PHE A 751 GLU A 759 -1 N ASP A 756 O SER A 794 SHEET 5 AA2 5 LYS A 766 ILE A 773 -1 O ILE A 773 N PHE A 751 SHEET 1 AA3 4 ASP A 730 LEU A 733 0 SHEET 2 AA3 4 ALA A 813 VAL A 817 1 O GLN A 816 N LEU A 733 SHEET 3 AA3 4 ASP A 790 ASP A 800 -1 N TYR A 791 O ILE A 815 SHEET 4 AA3 4 CYS A 804 GLY A 807 -1 O CYS A 804 N ASP A 800 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1