HEADER TRANSFERASE/ANTIBIOTIC 14-NOV-16 5TWK TITLE CRYSTAL STRUCTURE OF RLMH IN COMPLEX WITH SINEFUNGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE H; COMPND 3 CHAIN: C, D, A, B; COMPND 4 SYNONYM: 23S RRNA (PSEUDOURIDINE1915-N3)-METHYLTRANSFERASE,23S RRNA COMPND 5 M3PSI1915 METHYLTRANSFERASE,RRNA (PSEUDOURIDINE-N3-)- COMPND 6 METHYLTRANSFERASE RLMH; COMPND 7 EC: 2.1.1.177; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: RLMH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SINEFUNGIN, RNA METHYLTRANSFERASE, SPOUT, PSEUDOURIDINE, HELIX 69, KEYWDS 2 TRANSFERASE, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.KOH,R.MADIREDDY,T.J.BEANE,P.D.ZAMORE,A.A.KOROSTELEV REVDAT 4 04-OCT-23 5TWK 1 REMARK REVDAT 3 01-JAN-20 5TWK 1 REMARK REVDAT 2 13-SEP-17 5TWK 1 REMARK REVDAT 1 03-MAY-17 5TWK 0 JRNL AUTH C.S.KOH,R.MADIREDDY,T.J.BEANE,P.D.ZAMORE,A.A.KOROSTELEV JRNL TITL SMALL METHYLTRANSFERASE RLMH ASSEMBLES A COMPOSITE ACTIVE JRNL TITL 2 SITE TO METHYLATE A RIBOSOMAL PSEUDOURIDINE. JRNL REF SCI REP V. 7 969 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28428565 JRNL DOI 10.1038/S41598-017-01186-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0908 - 4.8050 0.99 2863 151 0.1780 0.2305 REMARK 3 2 4.8050 - 3.8149 1.00 2794 150 0.1494 0.1762 REMARK 3 3 3.8149 - 3.3330 1.00 2773 144 0.1708 0.2360 REMARK 3 4 3.3330 - 3.0284 1.00 2769 144 0.1854 0.2310 REMARK 3 5 3.0284 - 2.8114 1.00 2731 143 0.1879 0.2529 REMARK 3 6 2.8114 - 2.6457 1.00 2720 143 0.1928 0.2603 REMARK 3 7 2.6457 - 2.5132 1.00 2730 147 0.1968 0.3027 REMARK 3 8 2.5132 - 2.4038 1.00 2719 144 0.2063 0.3033 REMARK 3 9 2.4038 - 2.3113 1.00 2748 142 0.2120 0.2243 REMARK 3 10 2.3113 - 2.2315 1.00 2677 141 0.2368 0.3272 REMARK 3 11 2.2315 - 2.1618 1.00 2757 144 0.2440 0.3575 REMARK 3 12 2.1618 - 2.1000 0.92 2480 132 0.2643 0.3198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5204 REMARK 3 ANGLE : 1.274 7080 REMARK 3 CHIRALITY : 0.085 760 REMARK 3 PLANARITY : 0.007 888 REMARK 3 DIHEDRAL : 18.973 2048 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9337 9.6399 -55.3345 REMARK 3 T TENSOR REMARK 3 T11: 0.5524 T22: 0.6279 REMARK 3 T33: 0.3405 T12: 0.1451 REMARK 3 T13: 0.0047 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.9671 L22: 1.9020 REMARK 3 L33: 3.4118 L12: -0.5378 REMARK 3 L13: 0.8197 L23: -0.7182 REMARK 3 S TENSOR REMARK 3 S11: 0.2187 S12: 1.2142 S13: -0.1102 REMARK 3 S21: -0.3323 S22: -0.3811 S23: -0.2037 REMARK 3 S31: 0.4396 S32: 1.0777 S33: 0.1511 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID -1 THROUGH 155) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7566 12.8687 -33.2091 REMARK 3 T TENSOR REMARK 3 T11: 0.2984 T22: 0.2062 REMARK 3 T33: 0.2439 T12: -0.0303 REMARK 3 T13: 0.0081 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 3.4416 L22: 2.9857 REMARK 3 L33: 4.7754 L12: -1.0534 REMARK 3 L13: 0.6717 L23: -0.8036 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.3443 S13: -0.1627 REMARK 3 S21: 0.1394 S22: 0.0975 S23: 0.1306 REMARK 3 S31: -0.0075 S32: -0.4717 S33: -0.0273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0968 -6.3883 -26.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.4070 REMARK 3 T33: 0.2822 T12: 0.0362 REMARK 3 T13: 0.0373 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 4.1951 L22: 2.8997 REMARK 3 L33: 2.7064 L12: -0.2159 REMARK 3 L13: -0.4373 L23: 0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.6363 S13: 0.0113 REMARK 3 S21: -0.2348 S22: -0.1060 S23: -0.3257 REMARK 3 S31: 0.1007 S32: 0.5117 S33: 0.0460 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9401 -7.2617 -3.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.3400 REMARK 3 T33: 0.2438 T12: 0.0268 REMARK 3 T13: -0.0188 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 3.4877 L22: 2.5585 REMARK 3 L33: 4.2708 L12: 0.1815 REMARK 3 L13: 0.3016 L23: 0.8296 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -0.7374 S13: 0.0230 REMARK 3 S21: 0.0998 S22: -0.0549 S23: -0.1106 REMARK 3 S31: 0.1081 S32: 0.1269 S33: 0.0841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06791 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NS5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-BICINE BUFFER (PH 8.5), REMARK 280 0.09 M NAF, 0.09 M NABR, 0.09 M NAI, 20% V/V PEG 550 MME, 10% W/ REMARK 280 V PEG 20,000 IN THE PRESENCE OF 2 MM SINEFUNGIN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.97500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 MET D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 155 N SFG D 201 2.13 REMARK 500 OD1 ASP B 73 O HOH B 301 2.15 REMARK 500 NH1 ARG D 26 O HOH D 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD LYS A 45 CE LYS B 45 1655 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET C 31 80.34 -154.48 REMARK 500 ASN D 46 15.10 59.20 REMARK 500 LYS A 11 53.75 -118.47 REMARK 500 LYS A 45 -131.49 51.05 REMARK 500 HIS A 153 -7.75 -57.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TWJ RELATED DB: PDB DBREF 5TWK C 2 155 UNP B7MFQ9 RLMH_ECO45 2 155 DBREF 5TWK D 2 155 UNP B7MFQ9 RLMH_ECO45 2 155 DBREF 5TWK A 2 155 UNP B7MFQ9 RLMH_ECO45 2 155 DBREF 5TWK B 2 155 UNP B7MFQ9 RLMH_ECO45 2 155 SEQADV 5TWK MET C -6 UNP B7MFQ9 INITIATING METHIONINE SEQADV 5TWK HIS C -5 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS C -4 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS C -3 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS C -2 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS C -1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS C 0 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK VAL C 1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK MET D -6 UNP B7MFQ9 INITIATING METHIONINE SEQADV 5TWK HIS D -5 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS D -4 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS D -3 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS D -2 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS D -1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS D 0 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK VAL D 1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK MET A -6 UNP B7MFQ9 INITIATING METHIONINE SEQADV 5TWK HIS A -5 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS A -4 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS A -3 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS A -2 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS A -1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS A 0 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK VAL A 1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK MET B -6 UNP B7MFQ9 INITIATING METHIONINE SEQADV 5TWK HIS B -5 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS B -4 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS B -3 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS B -2 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS B -1 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK HIS B 0 UNP B7MFQ9 EXPRESSION TAG SEQADV 5TWK VAL B 1 UNP B7MFQ9 EXPRESSION TAG SEQRES 1 C 162 MET HIS HIS HIS HIS HIS HIS VAL LYS LEU GLN LEU VAL SEQRES 2 C 162 ALA VAL GLY THR LYS MET PRO ASP TRP VAL GLN THR GLY SEQRES 3 C 162 PHE THR GLU TYR LEU ARG ARG PHE PRO LYS ASP MET PRO SEQRES 4 C 162 PHE GLU LEU ILE GLU ILE PRO ALA GLY LYS ARG GLY LYS SEQRES 5 C 162 ASN ALA ASP ILE LYS ARG ILE LEU ASP LYS GLU GLY GLU SEQRES 6 C 162 GLN MET LEU ALA ALA ALA GLY LYS ASN ARG ILE VAL THR SEQRES 7 C 162 LEU ASP ILE PRO GLY LYS PRO TRP ASP THR PRO GLN LEU SEQRES 8 C 162 ALA ALA GLU LEU GLU ARG TRP LYS LEU ASP GLY ARG ASP SEQRES 9 C 162 VAL SER LEU LEU ILE GLY GLY PRO GLU GLY LEU SER PRO SEQRES 10 C 162 ALA CYS LYS ALA ALA ALA GLU GLN SER TRP SER LEU SER SEQRES 11 C 162 ALA LEU THR LEU PRO HIS PRO LEU VAL ARG VAL LEU VAL SEQRES 12 C 162 ALA GLU SER LEU TYR ARG ALA TRP SER ILE THR THR ASN SEQRES 13 C 162 HIS PRO TYR HIS ARG GLU SEQRES 1 D 162 MET HIS HIS HIS HIS HIS HIS VAL LYS LEU GLN LEU VAL SEQRES 2 D 162 ALA VAL GLY THR LYS MET PRO ASP TRP VAL GLN THR GLY SEQRES 3 D 162 PHE THR GLU TYR LEU ARG ARG PHE PRO LYS ASP MET PRO SEQRES 4 D 162 PHE GLU LEU ILE GLU ILE PRO ALA GLY LYS ARG GLY LYS SEQRES 5 D 162 ASN ALA ASP ILE LYS ARG ILE LEU ASP LYS GLU GLY GLU SEQRES 6 D 162 GLN MET LEU ALA ALA ALA GLY LYS ASN ARG ILE VAL THR SEQRES 7 D 162 LEU ASP ILE PRO GLY LYS PRO TRP ASP THR PRO GLN LEU SEQRES 8 D 162 ALA ALA GLU LEU GLU ARG TRP LYS LEU ASP GLY ARG ASP SEQRES 9 D 162 VAL SER LEU LEU ILE GLY GLY PRO GLU GLY LEU SER PRO SEQRES 10 D 162 ALA CYS LYS ALA ALA ALA GLU GLN SER TRP SER LEU SER SEQRES 11 D 162 ALA LEU THR LEU PRO HIS PRO LEU VAL ARG VAL LEU VAL SEQRES 12 D 162 ALA GLU SER LEU TYR ARG ALA TRP SER ILE THR THR ASN SEQRES 13 D 162 HIS PRO TYR HIS ARG GLU SEQRES 1 A 162 MET HIS HIS HIS HIS HIS HIS VAL LYS LEU GLN LEU VAL SEQRES 2 A 162 ALA VAL GLY THR LYS MET PRO ASP TRP VAL GLN THR GLY SEQRES 3 A 162 PHE THR GLU TYR LEU ARG ARG PHE PRO LYS ASP MET PRO SEQRES 4 A 162 PHE GLU LEU ILE GLU ILE PRO ALA GLY LYS ARG GLY LYS SEQRES 5 A 162 ASN ALA ASP ILE LYS ARG ILE LEU ASP LYS GLU GLY GLU SEQRES 6 A 162 GLN MET LEU ALA ALA ALA GLY LYS ASN ARG ILE VAL THR SEQRES 7 A 162 LEU ASP ILE PRO GLY LYS PRO TRP ASP THR PRO GLN LEU SEQRES 8 A 162 ALA ALA GLU LEU GLU ARG TRP LYS LEU ASP GLY ARG ASP SEQRES 9 A 162 VAL SER LEU LEU ILE GLY GLY PRO GLU GLY LEU SER PRO SEQRES 10 A 162 ALA CYS LYS ALA ALA ALA GLU GLN SER TRP SER LEU SER SEQRES 11 A 162 ALA LEU THR LEU PRO HIS PRO LEU VAL ARG VAL LEU VAL SEQRES 12 A 162 ALA GLU SER LEU TYR ARG ALA TRP SER ILE THR THR ASN SEQRES 13 A 162 HIS PRO TYR HIS ARG GLU SEQRES 1 B 162 MET HIS HIS HIS HIS HIS HIS VAL LYS LEU GLN LEU VAL SEQRES 2 B 162 ALA VAL GLY THR LYS MET PRO ASP TRP VAL GLN THR GLY SEQRES 3 B 162 PHE THR GLU TYR LEU ARG ARG PHE PRO LYS ASP MET PRO SEQRES 4 B 162 PHE GLU LEU ILE GLU ILE PRO ALA GLY LYS ARG GLY LYS SEQRES 5 B 162 ASN ALA ASP ILE LYS ARG ILE LEU ASP LYS GLU GLY GLU SEQRES 6 B 162 GLN MET LEU ALA ALA ALA GLY LYS ASN ARG ILE VAL THR SEQRES 7 B 162 LEU ASP ILE PRO GLY LYS PRO TRP ASP THR PRO GLN LEU SEQRES 8 B 162 ALA ALA GLU LEU GLU ARG TRP LYS LEU ASP GLY ARG ASP SEQRES 9 B 162 VAL SER LEU LEU ILE GLY GLY PRO GLU GLY LEU SER PRO SEQRES 10 B 162 ALA CYS LYS ALA ALA ALA GLU GLN SER TRP SER LEU SER SEQRES 11 B 162 ALA LEU THR LEU PRO HIS PRO LEU VAL ARG VAL LEU VAL SEQRES 12 B 162 ALA GLU SER LEU TYR ARG ALA TRP SER ILE THR THR ASN SEQRES 13 B 162 HIS PRO TYR HIS ARG GLU HET SFG C 201 27 HET SFG D 201 27 HET SFG A 201 27 HET SFG B 201 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 5 SFG 4(C15 H23 N7 O5) FORMUL 9 HOH *210(H2 O) HELIX 1 AA1 PRO C 13 ARG C 25 1 13 HELIX 2 AA2 ASP C 48 GLY C 65 1 18 HELIX 3 AA3 ASP C 80 GLY C 95 1 16 HELIX 4 AA4 SER C 109 ALA C 116 1 8 HELIX 5 AA5 PRO C 128 THR C 148 1 21 HELIX 6 AA6 HIS C 150 ARG C 154 5 5 HELIX 7 AA7 PRO D 13 ARG D 25 1 13 HELIX 8 AA8 ASP D 48 GLY D 65 1 18 HELIX 9 AA9 ASP D 80 GLY D 95 1 16 HELIX 10 AB1 SER D 109 ALA D 116 1 8 HELIX 11 AB2 PRO D 128 ASN D 149 1 22 HELIX 12 AB3 PRO A 13 ARG A 25 1 13 HELIX 13 AB4 ASP A 48 GLY A 65 1 18 HELIX 14 AB5 ASP A 80 GLY A 95 1 16 HELIX 15 AB6 SER A 109 ALA A 116 1 8 HELIX 16 AB7 PRO A 128 THR A 148 1 21 HELIX 17 AB8 HIS A 150 GLU A 155 5 6 HELIX 18 AB9 PRO B 13 ARG B 26 1 14 HELIX 19 AC1 ASP B 48 GLY B 65 1 18 HELIX 20 AC2 ASP B 80 GLY B 95 1 16 HELIX 21 AC3 SER B 109 ALA B 116 1 8 HELIX 22 AC4 PRO B 128 ILE B 146 1 19 HELIX 23 AC5 HIS B 150 GLU B 155 1 6 SHEET 1 AA1 5 PHE C 33 PRO C 39 0 SHEET 2 AA1 5 LEU C 3 GLY C 9 1 N GLY C 9 O ILE C 38 SHEET 3 AA1 5 VAL C 98 ILE C 102 1 O LEU C 100 N GLN C 4 SHEET 4 AA1 5 ARG C 68 LEU C 72 1 N ARG C 68 O SER C 99 SHEET 5 AA1 5 GLN C 118 TRP C 120 1 O TRP C 120 N THR C 71 SHEET 1 AA2 5 PHE D 33 ILE D 38 0 SHEET 2 AA2 5 LEU D 3 VAL D 8 1 N LEU D 5 O ILE D 36 SHEET 3 AA2 5 VAL D 98 ILE D 102 1 O VAL D 98 N GLN D 4 SHEET 4 AA2 5 ARG D 68 LEU D 72 1 N ARG D 68 O SER D 99 SHEET 5 AA2 5 GLN D 118 TRP D 120 1 O TRP D 120 N THR D 71 SHEET 1 AA3 5 PHE A 33 ILE A 38 0 SHEET 2 AA3 5 LEU A 3 VAL A 8 1 N LEU A 5 O ILE A 36 SHEET 3 AA3 5 VAL A 98 ILE A 102 1 O VAL A 98 N GLN A 4 SHEET 4 AA3 5 ARG A 68 LEU A 72 1 N ARG A 68 O SER A 99 SHEET 5 AA3 5 GLN A 118 TRP A 120 1 O TRP A 120 N THR A 71 SHEET 1 AA4 5 PHE B 33 ILE B 38 0 SHEET 2 AA4 5 LEU B 3 VAL B 8 1 N LEU B 5 O ILE B 36 SHEET 3 AA4 5 VAL B 98 ILE B 102 1 O VAL B 98 N GLN B 4 SHEET 4 AA4 5 ARG B 68 LEU B 72 1 N LEU B 72 O LEU B 101 SHEET 5 AA4 5 GLN B 118 TRP B 120 1 O TRP B 120 N THR B 71 SITE 1 AC1 16 LEU C 72 ASP C 73 ILE C 74 GLY C 103 SITE 2 AC1 16 GLY C 104 GLY C 107 LEU C 108 TRP C 120 SITE 3 AC1 16 LEU C 122 SER C 123 LEU C 125 THR C 126 SITE 4 AC1 16 LEU C 127 VAL C 132 HOH C 307 GLU D 155 SITE 1 AC2 16 ARG C 142 GLU C 155 LEU D 72 ASP D 73 SITE 2 AC2 16 ILE D 74 GLY D 103 GLY D 104 PRO D 105 SITE 3 AC2 16 GLY D 107 LEU D 122 SER D 123 LEU D 125 SITE 4 AC2 16 THR D 126 LEU D 127 HIS D 129 HOH D 337 SITE 1 AC3 18 LEU A 72 ASP A 73 ILE A 74 GLY A 103 SITE 2 AC3 18 GLY A 104 PRO A 105 GLU A 106 GLY A 107 SITE 3 AC3 18 LEU A 108 TRP A 120 LEU A 122 SER A 123 SITE 4 AC3 18 LEU A 125 THR A 126 LEU A 127 HOH A 313 SITE 5 AC3 18 GLU B 155 HOH B 317 SITE 1 AC4 17 HOH A 301 LEU B 72 ASP B 73 ILE B 74 SITE 2 AC4 17 ILE B 102 GLY B 103 GLY B 104 PRO B 105 SITE 3 AC4 17 GLY B 107 LEU B 108 TRP B 120 LEU B 122 SITE 4 AC4 17 SER B 123 LEU B 125 LEU B 127 VAL B 132 SITE 5 AC4 17 HOH B 306 CRYST1 66.370 37.950 121.820 90.00 105.74 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015067 0.000000 0.004247 0.00000 SCALE2 0.000000 0.026350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008529 0.00000