HEADER LYASE 17-NOV-16 5TXY TITLE IDENTIFICATION OF A NEW ZINC BINDING CHEMOTYPE OF BY FRAGMENT TITLE 2 SCREENING ON HUMAN CARBONIC ANHYDRASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE II,CARBONIC ANHYDRASE C,CAC,CARBONIC COMPND 5 ANHYDRASE II,CA-II; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN CARBONIC ANHYDRASE, ZINC BINDING CHEMOTYPE, CRYSTAL, KEYWDS 2 CRYSTALLIZATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.REN,T.S.PEAT,S.-A.POULSEN REVDAT 3 06-MAR-24 5TXY 1 REMARK REVDAT 2 27-SEP-17 5TXY 1 JRNL REVDAT 1 30-AUG-17 5TXY 0 JRNL AUTH P.K.CHRYSANTHOPOULOS,P.MUJUMDAR,L.A.WOODS,O.DOLEZAL,B.REN, JRNL AUTH 2 T.S.PEAT,S.A.POULSEN JRNL TITL IDENTIFICATION OF A NEW ZINC BINDING CHEMOTYPE BY FRAGMENT JRNL TITL 2 SCREENING. JRNL REF J. MED. CHEM. V. 60 7333 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28817930 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00606 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 71970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8943 - 2.9073 1.00 5302 145 0.1481 0.1426 REMARK 3 2 2.9073 - 2.3077 1.00 5181 148 0.1568 0.1726 REMARK 3 3 2.3077 - 2.0160 0.99 5110 139 0.1484 0.1810 REMARK 3 4 2.0160 - 1.8317 0.98 5096 151 0.1480 0.1531 REMARK 3 5 1.8317 - 1.7004 0.98 5046 148 0.1466 0.1617 REMARK 3 6 1.7004 - 1.6001 0.98 5033 144 0.1515 0.2036 REMARK 3 7 1.6001 - 1.5200 0.97 5032 143 0.1535 0.1897 REMARK 3 8 1.5200 - 1.4538 0.97 4975 144 0.1671 0.1919 REMARK 3 9 1.4538 - 1.3978 0.97 4979 138 0.1711 0.2047 REMARK 3 10 1.3978 - 1.3496 0.96 4950 148 0.1801 0.1993 REMARK 3 11 1.3496 - 1.3074 0.96 4920 135 0.1868 0.2073 REMARK 3 12 1.3074 - 1.2700 0.96 4919 143 0.1953 0.2148 REMARK 3 13 1.2700 - 1.2366 0.95 4864 146 0.2214 0.2573 REMARK 3 14 1.2366 - 1.2064 0.90 4571 120 0.2473 0.2683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2244 REMARK 3 ANGLE : 1.586 3065 REMARK 3 CHIRALITY : 0.082 317 REMARK 3 PLANARITY : 0.009 406 REMARK 3 DIHEDRAL : 13.081 853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8385 -4.3019 15.0739 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.1403 REMARK 3 T33: 0.1867 T12: 0.0078 REMARK 3 T13: 0.0478 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.4443 L22: 0.6579 REMARK 3 L33: 1.5876 L12: 0.3903 REMARK 3 L13: 0.8446 L23: -0.4246 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 0.0503 S13: -0.2469 REMARK 3 S21: -0.1693 S22: -0.0168 S23: -0.4296 REMARK 3 S31: 0.1236 S32: 0.1312 S33: 0.0637 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4055 -2.8727 28.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.1134 REMARK 3 T33: 0.0748 T12: 0.0197 REMARK 3 T13: -0.0085 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5319 L22: 1.3845 REMARK 3 L33: 0.9654 L12: 0.1705 REMARK 3 L13: -0.2895 L23: -0.1002 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: -0.1660 S13: 0.0499 REMARK 3 S21: 0.1273 S22: 0.0964 S23: -0.1061 REMARK 3 S31: 0.0273 S32: 0.1135 S33: 0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5744 4.1021 14.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.1355 REMARK 3 T33: 0.1105 T12: -0.0050 REMARK 3 T13: -0.0162 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.7736 L22: 1.0608 REMARK 3 L33: 0.9221 L12: -0.4522 REMARK 3 L13: 0.3509 L23: -0.2029 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.0810 S13: 0.1326 REMARK 3 S21: -0.1149 S22: 0.0422 S23: 0.0922 REMARK 3 S31: -0.1811 S32: -0.2072 S33: -0.0843 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1914 -0.2938 17.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0730 REMARK 3 T33: 0.0872 T12: -0.0032 REMARK 3 T13: -0.0038 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.7038 L22: 0.8262 REMARK 3 L33: 0.8636 L12: 0.1335 REMARK 3 L13: -0.1201 L23: 0.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.0102 S13: 0.0544 REMARK 3 S21: -0.0640 S22: 0.0288 S23: 0.1189 REMARK 3 S31: -0.0497 S32: -0.0275 S33: -0.0058 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1411 3.5243 17.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.0696 REMARK 3 T33: 0.0711 T12: 0.0029 REMARK 3 T13: -0.0026 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5722 L22: 1.1063 REMARK 3 L33: 0.7817 L12: 0.1372 REMARK 3 L13: -0.0644 L23: 0.2927 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.0298 S13: 0.0414 REMARK 3 S21: -0.0768 S22: -0.0122 S23: 0.0784 REMARK 3 S31: -0.0555 S32: -0.0117 S33: -0.0075 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4635 -6.1338 0.0162 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.1512 REMARK 3 T33: 0.1026 T12: -0.0090 REMARK 3 T13: -0.0349 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 3.7230 L22: 2.6086 REMARK 3 L33: 2.6266 L12: 1.8374 REMARK 3 L13: -1.3591 L23: -1.2561 REMARK 3 S TENSOR REMARK 3 S11: -0.1572 S12: 0.4982 S13: -0.0748 REMARK 3 S21: -0.5428 S22: 0.1104 S23: 0.1346 REMARK 3 S31: 0.0759 S32: -0.2875 S33: 0.0644 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1232 -0.3038 5.9687 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1159 REMARK 3 T33: 0.0942 T12: 0.0068 REMARK 3 T13: -0.0219 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.0239 L22: 0.6536 REMARK 3 L33: 0.7006 L12: 0.0118 REMARK 3 L13: -0.1631 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.1906 S13: 0.0069 REMARK 3 S21: -0.2237 S22: -0.0031 S23: 0.0852 REMARK 3 S31: -0.0676 S32: -0.1486 S33: -0.0183 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9114 -1.4634 22.2911 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0728 REMARK 3 T33: 0.0767 T12: 0.0033 REMARK 3 T13: 0.0015 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.3516 L22: 0.6742 REMARK 3 L33: 0.6486 L12: -0.1328 REMARK 3 L13: 0.0221 L23: 0.1434 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.0419 S13: -0.0065 REMARK 3 S21: -0.0145 S22: 0.0116 S23: 0.0205 REMARK 3 S31: 0.0120 S32: 0.0039 S33: -0.0036 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0095 -10.5004 1.1043 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.1179 REMARK 3 T33: 0.0892 T12: -0.0091 REMARK 3 T13: 0.0260 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.6157 L22: 1.0632 REMARK 3 L33: 1.2803 L12: 0.2323 REMARK 3 L13: -0.6186 L23: -0.5613 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: 0.2311 S13: -0.2088 REMARK 3 S21: -0.2952 S22: -0.0258 S23: -0.1325 REMARK 3 S31: 0.0087 S32: 0.0662 S33: 0.0172 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8435 -5.9656 23.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.0658 T22: 0.0760 REMARK 3 T33: 0.0758 T12: 0.0017 REMARK 3 T13: 0.0066 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.8566 L22: 1.1554 REMARK 3 L33: 0.9555 L12: -0.1059 REMARK 3 L13: 0.4434 L23: 0.5435 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.1583 S13: -0.0029 REMARK 3 S21: 0.0286 S22: 0.0872 S23: -0.0574 REMARK 3 S31: 0.0321 S32: 0.1065 S33: -0.0700 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000225006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.206 REMARK 200 RESOLUTION RANGE LOW (A) : 40.871 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.58 M AMMONIUM SULFATE, 0.1 M TRIS REMARK 280 -CHLORIDE (PH 8.9), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 280.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.70500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 434 O HOH A 515 1.54 REMARK 500 O HOH A 810 O HOH A 816 1.60 REMARK 500 O HOH A 662 O HOH A 684 1.62 REMARK 500 O HOH A 669 O HOH A 743 1.68 REMARK 500 OE1 GLU A 186 O HOH A 401 1.75 REMARK 500 O HOH A 630 O HOH A 695 1.76 REMARK 500 O HOH A 645 O HOH A 725 1.81 REMARK 500 O HOH A 609 O HOH A 675 1.83 REMARK 500 O HOH A 477 O HOH A 653 1.88 REMARK 500 O HOH A 668 O HOH A 715 1.90 REMARK 500 O HOH A 711 O HOH A 775 1.91 REMARK 500 OE1 GLU A 26 O HOH A 402 1.92 REMARK 500 O HOH A 784 O HOH A 819 1.93 REMARK 500 OD1 ASP A 174 O HOH A 403 1.93 REMARK 500 O HOH A 464 O HOH A 466 1.94 REMARK 500 N TRP A 5 O HOH A 404 1.94 REMARK 500 O HOH A 810 O HOH A 821 1.95 REMARK 500 OG SER A 43 O HOH A 405 1.96 REMARK 500 NZ LYS A 171 O HOH A 406 1.96 REMARK 500 NE2 GLN A 136 O HOH A 407 1.98 REMARK 500 NE2 HIS A 64 O HOH A 408 2.00 REMARK 500 O HOH A 492 O HOH A 658 2.00 REMARK 500 O HOH A 412 O HOH A 605 2.02 REMARK 500 O HOH A 559 O HOH A 717 2.02 REMARK 500 O HOH A 408 O HOH A 712 2.02 REMARK 500 OD1 ASP A 34 O HOH A 409 2.03 REMARK 500 O HOH A 476 O HOH A 706 2.04 REMARK 500 O HOH A 428 O HOH A 679 2.04 REMARK 500 N ARG A 253 O HOH A 410 2.07 REMARK 500 O HOH A 692 O HOH A 711 2.09 REMARK 500 O HOH A 682 O HOH A 765 2.09 REMARK 500 O HOH A 561 O HOH A 699 2.10 REMARK 500 OE1 GLU A 237 O HOH A 411 2.11 REMARK 500 O HOH A 674 O HOH A 746 2.13 REMARK 500 OE1 GLU A 233 O HOH A 412 2.13 REMARK 500 O HOH A 723 O HOH A 813 2.13 REMARK 500 O HOH A 507 O HOH A 589 2.14 REMARK 500 O HOH A 592 O HOH A 725 2.16 REMARK 500 O HOH A 409 O HOH A 521 2.16 REMARK 500 O HOH A 628 O HOH A 689 2.17 REMARK 500 O HOH A 412 O HOH A 673 2.17 REMARK 500 O HOH A 595 O HOH A 742 2.18 REMARK 500 O HOH A 451 O HOH A 535 2.18 REMARK 500 OD2 ASP A 161 O HOH A 413 2.19 REMARK 500 OD1 ASP A 52 O HOH A 414 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 736 O HOH A 768 2646 1.91 REMARK 500 O HOH A 508 O HOH A 615 2646 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 57.94 -144.15 REMARK 500 ASP A 75 95.15 -68.65 REMARK 500 ASP A 75 92.02 -68.65 REMARK 500 LYS A 76 -78.33 -107.09 REMARK 500 GLU A 106 -60.70 -93.88 REMARK 500 LYS A 111 -1.91 72.01 REMARK 500 PHE A 175 62.94 -150.07 REMARK 500 ASN A 243 47.54 -91.77 REMARK 500 LYS A 251 -136.89 54.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 822 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 824 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 825 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 829 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 830 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 831 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 832 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 833 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 834 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 835 DISTANCE = 9.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 103.0 REMARK 620 3 HIS A 119 ND1 115.2 99.9 REMARK 620 4 7Q1 A 303 N10 101.2 120.7 116.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7Q1 A 303 DBREF 5TXY A 1 260 UNP P00918 CAH2_HUMAN 1 260 SEQRES 1 A 260 MET SER HIS HIS TRP GLY TYR GLY LYS HIS ASN GLY PRO SEQRES 2 A 260 GLU HIS TRP HIS LYS ASP PHE PRO ILE ALA LYS GLY GLU SEQRES 3 A 260 ARG GLN SER PRO VAL ASP ILE ASP THR HIS THR ALA LYS SEQRES 4 A 260 TYR ASP PRO SER LEU LYS PRO LEU SER VAL SER TYR ASP SEQRES 5 A 260 GLN ALA THR SER LEU ARG ILE LEU ASN ASN GLY HIS ALA SEQRES 6 A 260 PHE ASN VAL GLU PHE ASP ASP SER GLN ASP LYS ALA VAL SEQRES 7 A 260 LEU LYS GLY GLY PRO LEU ASP GLY THR TYR ARG LEU ILE SEQRES 8 A 260 GLN PHE HIS PHE HIS TRP GLY SER LEU ASP GLY GLN GLY SEQRES 9 A 260 SER GLU HIS THR VAL ASP LYS LYS LYS TYR ALA ALA GLU SEQRES 10 A 260 LEU HIS LEU VAL HIS TRP ASN THR LYS TYR GLY ASP PHE SEQRES 11 A 260 GLY LYS ALA VAL GLN GLN PRO ASP GLY LEU ALA VAL LEU SEQRES 12 A 260 GLY ILE PHE LEU LYS VAL GLY SER ALA LYS PRO GLY LEU SEQRES 13 A 260 GLN LYS VAL VAL ASP VAL LEU ASP SER ILE LYS THR LYS SEQRES 14 A 260 GLY LYS SER ALA ASP PHE THR ASN PHE ASP PRO ARG GLY SEQRES 15 A 260 LEU LEU PRO GLU SER LEU ASP TYR TRP THR TYR PRO GLY SEQRES 16 A 260 SER LEU THR THR PRO PRO LEU LEU GLU CYS VAL THR TRP SEQRES 17 A 260 ILE VAL LEU LYS GLU PRO ILE SER VAL SER SER GLU GLN SEQRES 18 A 260 VAL LEU LYS PHE ARG LYS LEU ASN PHE ASN GLY GLU GLY SEQRES 19 A 260 GLU PRO GLU GLU LEU MET VAL ASP ASN TRP ARG PRO ALA SEQRES 20 A 260 GLN PRO LEU LYS ASN ARG GLN ILE LYS ALA SER PHE LYS HET ZN A 301 1 HET FMT A 302 3 HET 7Q1 A 303 13 HETNAM ZN ZINC ION HETNAM FMT FORMIC ACID HETNAM 7Q1 (5R)-5-PHENYL-1,3-OXAZOLIDINE-2,4-DIONE FORMUL 2 ZN ZN 2+ FORMUL 3 FMT C H2 O2 FORMUL 4 7Q1 C9 H7 N O3 FORMUL 5 HOH *435(H2 O) HELIX 1 AA1 HIS A 15 ASP A 19 5 5 HELIX 2 AA2 PHE A 20 GLY A 25 5 6 HELIX 3 AA3 LYS A 126 GLY A 128 5 3 HELIX 4 AA4 ASP A 129 VAL A 134 1 6 HELIX 5 AA5 LYS A 153 GLY A 155 5 3 HELIX 6 AA6 LEU A 156 LEU A 163 1 8 HELIX 7 AA7 ASP A 164 LYS A 167 5 4 HELIX 8 AA8 ASP A 179 LEU A 184 5 6 HELIX 9 AA9 SER A 218 ARG A 226 1 9 SHEET 1 AA1 2 ASP A 32 ILE A 33 0 SHEET 2 AA1 2 THR A 108 VAL A 109 1 O THR A 108 N ILE A 33 SHEET 1 AA210 LYS A 39 TYR A 40 0 SHEET 2 AA210 LYS A 256 ALA A 257 1 O ALA A 257 N LYS A 39 SHEET 3 AA210 TYR A 190 GLY A 195 -1 N THR A 192 O LYS A 256 SHEET 4 AA210 VAL A 206 LEU A 211 -1 O VAL A 206 N GLY A 195 SHEET 5 AA210 LEU A 140 VAL A 149 1 N GLY A 144 O ILE A 209 SHEET 6 AA210 ALA A 116 ASN A 124 -1 N LEU A 118 O ILE A 145 SHEET 7 AA210 TYR A 88 TRP A 97 -1 N HIS A 94 O HIS A 119 SHEET 8 AA210 PHE A 66 PHE A 70 -1 N VAL A 68 O PHE A 93 SHEET 9 AA210 SER A 56 ASN A 61 -1 N LEU A 57 O GLU A 69 SHEET 10 AA210 SER A 172 ASP A 174 -1 O ALA A 173 N ILE A 59 SHEET 1 AA3 6 LYS A 45 SER A 50 0 SHEET 2 AA3 6 VAL A 78 GLY A 82 -1 O VAL A 78 N SER A 50 SHEET 3 AA3 6 TYR A 88 TRP A 97 -1 O TYR A 88 N LEU A 79 SHEET 4 AA3 6 ALA A 116 ASN A 124 -1 O HIS A 119 N HIS A 94 SHEET 5 AA3 6 LEU A 140 VAL A 149 -1 O ILE A 145 N LEU A 118 SHEET 6 AA3 6 ILE A 215 VAL A 217 1 O ILE A 215 N PHE A 146 LINK NE2 HIS A 94 ZN ZN A 301 1555 1555 2.01 LINK NE2 HIS A 96 ZN ZN A 301 1555 1555 2.02 LINK ND1 HIS A 119 ZN ZN A 301 1555 1555 2.01 LINK ZN ZN A 301 N10 7Q1 A 303 1555 1555 1.90 CISPEP 1 SER A 29 PRO A 30 0 -2.12 CISPEP 2 SER A 29 PRO A 30 0 -0.30 CISPEP 3 PRO A 200 PRO A 201 0 6.59 SITE 1 AC1 4 HIS A 94 HIS A 96 HIS A 119 7Q1 A 303 SITE 1 AC2 5 TYR A 114 LYS A 148 HOH A 434 HOH A 515 SITE 2 AC2 5 HOH A 542 SITE 1 AC3 10 GLN A 92 HIS A 94 HIS A 96 HIS A 119 SITE 2 AC3 10 LEU A 197 THR A 198 THR A 199 TRP A 208 SITE 3 AC3 10 ZN A 301 HOH A 558 CRYST1 42.154 41.410 72.072 90.00 104.17 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023723 0.000000 0.005991 0.00000 SCALE2 0.000000 0.024149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014311 0.00000