HEADER SIGNALING PROTEIN/PEPTIDE 20-NOV-16 5TYI TITLE GRB7 SH2 WITH BICYCLIC PEPTIDE CONTAINING PY MIMETIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: B47,EPIDERMAL GROWTH FACTOR RECEPTOR GRB-7,GRB7 ADAPTER COMPND 5 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE INHIBITOR; COMPND 9 CHAIN: L, M, N, P; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS SH2, INHIBITOR, BICYCLIC, SIGNALING PROTEIN-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.M.WATSON,M.C.J.WILCE,J.A.WILCE REVDAT 4 15-NOV-23 5TYI 1 LINK ATOM REVDAT 3 08-JAN-20 5TYI 1 REMARK REVDAT 2 09-JAN-19 5TYI 1 JRNL REVDAT 1 15-NOV-17 5TYI 0 JRNL AUTH G.M.WATSON,K.KULKARNI,J.SANG,X.MA,M.J.GUNZBURG,P.PERLMUTTER, JRNL AUTH 2 M.C.J.WILCE,J.A.WILCE JRNL TITL DISCOVERY, DEVELOPMENT, AND CELLULAR DELIVERY OF POTENT AND JRNL TITL 2 SELECTIVE BICYCLIC PEPTIDE INHIBITORS OF GRB7 CANCER TARGET. JRNL REF J. MED. CHEM. V. 60 9349 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 29083893 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01320 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 24038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1932 - 4.4709 0.99 2585 149 0.1905 0.2299 REMARK 3 2 4.4709 - 3.5491 0.99 2556 151 0.1668 0.2031 REMARK 3 3 3.5491 - 3.1006 0.99 2558 122 0.1845 0.2156 REMARK 3 4 3.1006 - 2.8172 0.99 2508 137 0.2155 0.2435 REMARK 3 5 2.8172 - 2.6153 0.98 2565 132 0.2367 0.2664 REMARK 3 6 2.6153 - 2.4611 0.98 2532 120 0.2467 0.3489 REMARK 3 7 2.4611 - 2.3379 0.98 2522 133 0.2493 0.2865 REMARK 3 8 2.3379 - 2.2361 0.97 2516 120 0.2552 0.2975 REMARK 3 9 2.2361 - 2.1500 0.98 2501 131 0.2533 0.3231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3607 REMARK 3 ANGLE : 1.256 4839 REMARK 3 CHIRALITY : 0.060 530 REMARK 3 PLANARITY : 0.006 632 REMARK 3 DIHEDRAL : 15.033 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.184 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NASCN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.80500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, L, M, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 PRO A 415 REMARK 465 ALA A 416 REMARK 465 SER A 417 REMARK 465 GLY A 418 REMARK 465 THR A 419 REMARK 465 SER A 420 REMARK 465 LEU A 421 REMARK 465 SER A 422 REMARK 465 ALA A 423 REMARK 465 ALA A 424 REMARK 465 GLU A 487 REMARK 465 VAL A 530 REMARK 465 ALA A 531 REMARK 465 LEU A 532 REMARK 465 GLY B 413 REMARK 465 SER B 414 REMARK 465 PRO B 415 REMARK 465 ALA B 416 REMARK 465 SER B 417 REMARK 465 GLY B 418 REMARK 465 THR B 419 REMARK 465 SER B 420 REMARK 465 LEU B 421 REMARK 465 SER B 422 REMARK 465 GLU B 488 REMARK 465 GLY B 489 REMARK 465 VAL B 530 REMARK 465 ALA B 531 REMARK 465 LEU B 532 REMARK 465 GLY C 413 REMARK 465 SER C 414 REMARK 465 PRO C 415 REMARK 465 ALA C 416 REMARK 465 SER C 417 REMARK 465 GLY C 418 REMARK 465 THR C 419 REMARK 465 SER C 420 REMARK 465 LEU C 421 REMARK 465 SER C 422 REMARK 465 ALA C 423 REMARK 465 ALA C 424 REMARK 465 ILE C 425 REMARK 465 GLU C 488 REMARK 465 ALA C 531 REMARK 465 LEU C 532 REMARK 465 GLY D 413 REMARK 465 SER D 414 REMARK 465 PRO D 415 REMARK 465 ALA D 416 REMARK 465 SER D 417 REMARK 465 GLY D 418 REMARK 465 THR D 419 REMARK 465 SER D 420 REMARK 465 LEU D 421 REMARK 465 SER D 422 REMARK 465 ALA D 423 REMARK 465 ALA D 424 REMARK 465 GLU D 488 REMARK 465 THR D 528 REMARK 465 ARG D 529 REMARK 465 VAL D 530 REMARK 465 ALA D 531 REMARK 465 LEU D 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 425 CG1 CG2 CD1 REMARK 470 HIS A 426 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 435 CD NE CZ NH1 NH2 REMARK 470 LEU A 454 CG CD1 CD2 REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 GLN A 475 CG CD OE1 NE2 REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 525 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 528 OG1 CG2 REMARK 470 ARG A 529 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 425 CG1 CG2 CD1 REMARK 470 ARG B 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 443 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 447 CG CD OE1 NE2 REMARK 470 ARG B 462 NE CZ NH1 NH2 REMARK 470 GLU B 486 CG CD OE1 OE2 REMARK 470 GLU B 487 CG CD OE1 OE2 REMARK 470 ARG B 490 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 491 CG CD1 CD2 REMARK 470 GLN B 499 CG CD OE1 NE2 REMARK 470 ARG B 524 CG CD NE CZ NH1 NH2 REMARK 470 THR B 528 OG1 CG2 REMARK 470 HIS C 426 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 427 CG CD NE CZ NH1 NH2 REMARK 470 THR C 428 OG1 CG2 REMARK 470 GLN C 429 CG CD OE1 NE2 REMARK 470 LEU C 430 CG CD1 CD2 REMARK 470 ARG C 435 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 465 CG CD OE1 NE2 REMARK 470 GLU C 486 CG CD OE1 OE2 REMARK 470 ARG C 490 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 491 CG CD1 CD2 REMARK 470 ARG C 524 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 425 CG1 CG2 CD1 REMARK 470 ARG D 427 CG CD NE CZ NH1 NH2 REMARK 470 THR D 428 OG1 CG2 REMARK 470 LEU D 430 CG CD1 CD2 REMARK 470 ARG D 435 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 444 CG CD1 CD2 REMARK 470 ASP D 452 CG OD1 OD2 REMARK 470 GLN D 461 CG CD OE1 NE2 REMARK 470 LYS D 476 CG CD CE NZ REMARK 470 GLU D 486 CG CD OE1 OE2 REMARK 470 ARG D 490 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 516 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 524 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 3 CG CD OE1 OE2 REMARK 470 GLU M 3 CG CD OE1 OE2 REMARK 470 GLU N 3 CG CD OE1 OE2 REMARK 470 GLU P 3 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS L 1 C08 48V L 9 2.12 REMARK 500 CE LYS P 1 CD GLU P 8 2.12 REMARK 500 N LYS M 1 O10 48V M 9 2.15 REMARK 500 NH2 ARG C 438 O GLY N 4 2.17 REMARK 500 OG1 THR B 500 O HOH B 601 2.17 REMARK 500 N LYS N 1 O10 48V N 9 2.19 REMARK 500 NZ LYS N 1 OE2 GLU N 8 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 99Y L 5 C - N - CA ANGL. DEV. = 36.1 DEGREES REMARK 500 99Y M 5 C - N - CA ANGL. DEV. = 38.5 DEGREES REMARK 500 99Y N 5 C - N - CA ANGL. DEV. = 42.6 DEGREES REMARK 500 99Y P 5 C - N - CA ANGL. DEV. = 30.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 426 27.61 -76.94 REMARK 500 ARG A 524 -68.67 -102.90 REMARK 500 ARG B 524 -72.13 -102.18 REMARK 500 ARG C 524 -60.76 -100.92 REMARK 500 ASP D 496 44.48 -140.26 REMARK 500 ARG D 524 -72.35 -101.73 REMARK 500 99Y L 5 106.27 161.48 REMARK 500 99Y M 5 119.42 -65.85 REMARK 500 99Y N 5 122.36 -133.34 REMARK 500 99Y P 5 118.45 -141.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY L 4 99Y L 5 -61.17 REMARK 500 GLY N 4 99Y N 5 -132.58 REMARK 500 GLY P 4 99Y P 5 -125.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 99Y M 5 -10.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 626 DISTANCE = 6.12 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U06 RELATED DB: PDB REMARK 900 RELATED ID: 5U1Q RELATED DB: PDB DBREF 5TYI A 415 532 UNP Q14451 GRB7_HUMAN 438 555 DBREF 5TYI B 415 532 UNP Q14451 GRB7_HUMAN 438 555 DBREF 5TYI C 415 532 UNP Q14451 GRB7_HUMAN 438 555 DBREF 5TYI D 415 532 UNP Q14451 GRB7_HUMAN 438 555 DBREF 5TYI L 1 9 PDB 5TYI 5TYI 1 9 DBREF 5TYI M 1 9 PDB 5TYI 5TYI 1 9 DBREF 5TYI N 1 9 PDB 5TYI 5TYI 1 9 DBREF 5TYI P 1 9 PDB 5TYI 5TYI 1 9 SEQADV 5TYI GLY A 413 UNP Q14451 EXPRESSION TAG SEQADV 5TYI SER A 414 UNP Q14451 EXPRESSION TAG SEQADV 5TYI GLY B 413 UNP Q14451 EXPRESSION TAG SEQADV 5TYI SER B 414 UNP Q14451 EXPRESSION TAG SEQADV 5TYI GLY C 413 UNP Q14451 EXPRESSION TAG SEQADV 5TYI SER C 414 UNP Q14451 EXPRESSION TAG SEQADV 5TYI GLY D 413 UNP Q14451 EXPRESSION TAG SEQADV 5TYI SER D 414 UNP Q14451 EXPRESSION TAG SEQRES 1 A 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 A 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 A 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 A 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 A 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 A 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 A 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 A 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 A 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 A 120 VAL ALA LEU SEQRES 1 B 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 B 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 B 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 B 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 B 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 B 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 B 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 B 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 B 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 B 120 VAL ALA LEU SEQRES 1 C 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 C 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 C 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 C 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 C 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 C 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 C 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 C 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 C 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 C 120 VAL ALA LEU SEQRES 1 D 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 D 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 D 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 D 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 D 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 D 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 D 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 D 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 D 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 D 120 VAL ALA LEU SEQRES 1 L 9 LYS PHE GLU GLY 99Y ASP ASN GLU 48V SEQRES 1 M 9 LYS PHE GLU GLY 99Y ASP ASN GLU 48V SEQRES 1 N 9 LYS PHE GLU GLY 99Y ASP ASN GLU 48V SEQRES 1 P 9 LYS PHE GLU GLY 99Y ASP ASN GLU 48V HET 99Y L 5 14 HET 48V L 9 10 HET 99Y M 5 14 HET 48V M 9 10 HET 99Y N 5 14 HET 48V N 9 10 HET 99Y P 5 14 HET 48V P 9 10 HETNAM 99Y 4-CARBOXY-D-PHENYLALANINE HETNAM 48V {[(2R)-2,3-DIAMINO-3-OXOPROPYL]SULFANYL}ACETIC ACID FORMUL 5 99Y 4(C10 H11 N O4) FORMUL 5 48V 4(C5 H10 N2 O3 S) FORMUL 9 HOH *122(H2 O) HELIX 1 AA1 ILE A 425 GLN A 429 5 5 HELIX 2 AA2 SER A 437 GLN A 447 1 11 HELIX 3 AA3 ASP A 504 GLN A 513 1 10 HELIX 4 AA4 ILE B 425 GLN B 429 5 5 HELIX 5 AA5 SER B 437 GLN B 447 1 11 HELIX 6 AA6 ASP B 504 ASN B 515 1 12 HELIX 7 AA7 SER C 437 GLN C 447 1 11 HELIX 8 AA8 ASP C 504 ASN C 515 1 12 HELIX 9 AA9 ILE D 425 GLN D 429 5 5 HELIX 10 AB1 SER D 437 GLN D 447 1 11 HELIX 11 AB2 ASP D 504 ASN D 515 1 12 SHEET 1 AA1 4 PHE A 455 GLU A 459 0 SHEET 2 AA1 4 PHE A 467 HIS A 473 -1 O SER A 470 N LEU A 456 SHEET 3 AA1 4 LYS A 476 SER A 485 -1 O ILE A 482 N PHE A 467 SHEET 4 AA1 4 TYR A 492 SER A 494 -1 O SER A 494 N LEU A 483 SHEET 1 AA2 4 PHE B 455 GLU B 459 0 SHEET 2 AA2 4 PHE B 467 HIS B 473 -1 O VAL B 468 N ARG B 458 SHEET 3 AA2 4 LYS B 476 SER B 485 -1 O ILE B 482 N PHE B 467 SHEET 4 AA2 4 TYR B 492 SER B 494 -1 O TYR B 492 N SER B 485 SHEET 1 AA3 5 LEU C 491 SER C 494 0 SHEET 2 AA3 5 LYS C 476 GLU C 486 -1 N LEU C 483 O SER C 494 SHEET 3 AA3 5 PHE C 467 HIS C 473 -1 N LEU C 471 O LYS C 478 SHEET 4 AA3 5 LEU C 454 GLU C 459 -1 N ARG C 458 O VAL C 468 SHEET 5 AA3 5 HIS C 525 CYS C 526 1 O HIS C 525 N PHE C 455 SHEET 1 AA4 4 PHE D 455 GLU D 459 0 SHEET 2 AA4 4 PHE D 467 HIS D 473 -1 O VAL D 468 N ARG D 458 SHEET 3 AA4 4 LYS D 476 GLU D 486 -1 O LYS D 478 N LEU D 471 SHEET 4 AA4 4 LEU D 491 SER D 494 -1 O TYR D 492 N SER D 485 LINK NZ LYS L 1 CD GLU L 8 1555 1555 1.33 LINK N LYS L 1 C09 48V L 9 1555 1555 1.33 LINK C GLY L 4 N 99Y L 5 1555 1555 1.30 LINK C 99Y L 5 N ASP L 6 1555 1555 1.33 LINK C GLU L 8 N01 48V L 9 1555 1555 1.32 LINK NZ LYS M 1 CD GLU M 8 1555 1555 1.32 LINK N LYS M 1 C09 48V M 9 1555 1555 1.32 LINK C GLY M 4 N 99Y M 5 1555 1555 1.32 LINK C 99Y M 5 N ASP M 6 1555 1555 1.35 LINK C GLU M 8 N01 48V M 9 1555 1555 1.31 LINK NZ LYS N 1 CD GLU N 8 1555 1555 1.31 LINK N LYS N 1 C09 48V N 9 1555 1555 1.33 LINK C GLY N 4 N 99Y N 5 1555 1555 1.31 LINK C 99Y N 5 N ASP N 6 1555 1555 1.33 LINK C GLU N 8 N01 48V N 9 1555 1555 1.32 LINK NZ LYS P 1 CD GLU P 8 1555 1555 1.33 LINK N LYS P 1 C09 48V P 9 1555 1555 1.32 LINK C GLY P 4 N 99Y P 5 1555 1555 1.31 LINK C 99Y P 5 N ASP P 6 1555 1555 1.33 LINK C GLU P 8 N01 48V P 9 1555 1555 1.33 CRYST1 45.070 107.610 48.012 90.00 101.38 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022188 0.000000 0.004466 0.00000 SCALE2 0.000000 0.009293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021246 0.00000