HEADER TRANSFERASE 21-NOV-16 5TZJ TITLE CRYSTAL STRUCTURE OF S. AUREUS TARS 1-349 IN COMPLEX WITH UDP-GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL TRANSFERASE; COMPND 3 CHAIN: C, A; COMPND 4 FRAGMENT: RESIDUES 2-350; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SAMEA2236484_00765, SAMEA2384030_00583, SAMEA2384487_01253, SOURCE 5 SAMEA2445549_00791, SAMEA2445572_00749, SAMEA2445608_00472, SOURCE 6 SAMEA2445616_00196, SAMEA2445622_01196, SAMEA2445624_00746, SOURCE 7 SAMEA2445630_01744, SAMEA2445663_00417, SAMEA2445672_00193; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, GT-A, WALL TEICHOIC ACID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WORRALL,S.SOBHANIFAR,D.T.KING,N.C.STRYNADKA REVDAT 3 06-MAR-24 5TZJ 1 REMARK REVDAT 2 01-NOV-17 5TZJ 1 REMARK REVDAT 1 04-JAN-17 5TZJ 0 JRNL AUTH S.SOBHANIFAR,L.J.WORRALL,D.T.KING,G.A.WASNEY,L.BAUMANN, JRNL AUTH 2 R.T.GALE,M.NOSELLA,E.D.BROWN,S.G.WITHERS,N.C.STRYNADKA JRNL TITL STRUCTURE AND MECHANISM OF STAPHYLOCOCCUS AUREUS TARS, THE JRNL TITL 2 WALL TEICHOIC ACID BETA-GLYCOSYLTRANSFERASE INVOLVED IN JRNL TITL 3 METHICILLIN RESISTANCE. JRNL REF PLOS PATHOG. V. 12 06067 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27973583 JRNL DOI 10.1371/JOURNAL.PPAT.1006067 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 71872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5734 - 5.6260 0.95 2645 140 0.1754 0.1859 REMARK 3 2 5.6260 - 4.4665 0.95 2635 139 0.1623 0.1955 REMARK 3 3 4.4665 - 3.9022 0.94 2613 137 0.1484 0.1772 REMARK 3 4 3.9022 - 3.5455 0.93 2560 135 0.1623 0.2095 REMARK 3 5 3.5455 - 3.2915 0.93 2590 136 0.1735 0.1911 REMARK 3 6 3.2915 - 3.0975 0.94 2610 137 0.1866 0.2116 REMARK 3 7 3.0975 - 2.9423 0.95 2630 139 0.1902 0.2444 REMARK 3 8 2.9423 - 2.8143 0.95 2626 139 0.1925 0.2341 REMARK 3 9 2.8143 - 2.7060 0.95 2645 139 0.1900 0.2460 REMARK 3 10 2.7060 - 2.6126 0.94 2597 137 0.1893 0.2018 REMARK 3 11 2.6126 - 2.5309 0.95 2667 140 0.1918 0.2463 REMARK 3 12 2.5309 - 2.4586 0.95 2630 139 0.1913 0.2398 REMARK 3 13 2.4586 - 2.3938 0.95 2654 140 0.1870 0.2114 REMARK 3 14 2.3938 - 2.3354 0.96 2686 141 0.1865 0.2794 REMARK 3 15 2.3354 - 2.2823 0.95 2596 137 0.2011 0.2374 REMARK 3 16 2.2823 - 2.2338 0.93 2660 140 0.2082 0.2552 REMARK 3 17 2.2338 - 2.1891 0.95 2606 137 0.2068 0.2472 REMARK 3 18 2.1891 - 2.1478 0.96 2693 141 0.2017 0.2588 REMARK 3 19 2.1478 - 2.1094 0.96 2581 136 0.2121 0.2687 REMARK 3 20 2.1094 - 2.0737 0.95 2696 142 0.2326 0.2743 REMARK 3 21 2.0737 - 2.0402 0.92 2496 132 0.2472 0.3214 REMARK 3 22 2.0402 - 2.0088 0.96 2735 143 0.2578 0.3276 REMARK 3 23 2.0088 - 1.9793 0.95 2615 138 0.2757 0.2878 REMARK 3 24 1.9793 - 1.9514 0.95 2673 141 0.3007 0.3162 REMARK 3 25 1.9514 - 1.9250 0.94 2587 136 0.3363 0.4265 REMARK 3 26 1.9250 - 1.9000 0.93 2551 134 0.3759 0.4457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5871 REMARK 3 ANGLE : 1.222 7951 REMARK 3 CHIRALITY : 0.071 879 REMARK 3 PLANARITY : 0.008 1024 REMARK 3 DIHEDRAL : 18.088 3535 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.5756 -89.4865 -85.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.4764 T22: 0.4975 REMARK 3 T33: 0.2226 T12: -0.2071 REMARK 3 T13: 0.0054 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 1.6457 L22: 2.0200 REMARK 3 L33: 3.9944 L12: 0.3101 REMARK 3 L13: -0.6922 L23: 0.0157 REMARK 3 S TENSOR REMARK 3 S11: 0.4031 S12: -0.5013 S13: 0.2730 REMARK 3 S21: 0.5487 S22: -0.5110 S23: -0.0470 REMARK 3 S31: -0.3065 S32: 0.0774 S33: 0.0517 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 100 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8801-102.1869 -89.4943 REMARK 3 T TENSOR REMARK 3 T11: 0.3463 T22: 0.3425 REMARK 3 T33: 0.1933 T12: -0.1089 REMARK 3 T13: 0.0286 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 3.8060 L22: 3.1691 REMARK 3 L33: 3.1808 L12: 0.9209 REMARK 3 L13: -0.4211 L23: 1.6061 REMARK 3 S TENSOR REMARK 3 S11: 0.2892 S12: -0.4107 S13: 0.1650 REMARK 3 S21: 0.4764 S22: -0.3913 S23: 0.2192 REMARK 3 S31: 0.0757 S32: -0.3186 S33: 0.0618 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 218 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5974-110.6225-112.3953 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.1054 REMARK 3 T33: 0.2201 T12: 0.0327 REMARK 3 T13: 0.0253 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.0607 L22: 1.8756 REMARK 3 L33: 1.1325 L12: 0.7542 REMARK 3 L13: 0.0827 L23: -0.5501 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.0077 S13: 0.1451 REMARK 3 S21: 0.0320 S22: -0.0052 S23: 0.1799 REMARK 3 S31: 0.0278 S32: -0.0324 S33: -0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.6830 -91.6374-142.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.3830 T22: 0.7031 REMARK 3 T33: 0.3326 T12: -0.2021 REMARK 3 T13: -0.0996 T23: 0.1235 REMARK 3 L TENSOR REMARK 3 L11: 1.1045 L22: 2.7004 REMARK 3 L33: 3.4712 L12: 0.3640 REMARK 3 L13: -0.0241 L23: -0.7218 REMARK 3 S TENSOR REMARK 3 S11: -0.3965 S12: 0.9013 S13: 0.1298 REMARK 3 S21: -0.4243 S22: 0.5246 S23: 0.6145 REMARK 3 S31: 0.1245 S32: -0.6900 S33: -0.1417 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9096 -88.1266-139.4365 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.3982 REMARK 3 T33: 0.2010 T12: -0.0813 REMARK 3 T13: -0.0018 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 3.3547 L22: 3.6215 REMARK 3 L33: 4.0337 L12: 0.7425 REMARK 3 L13: 0.9664 L23: -1.3907 REMARK 3 S TENSOR REMARK 3 S11: -0.3613 S12: 0.6263 S13: 0.3140 REMARK 3 S21: -0.1819 S22: 0.3131 S23: 0.0196 REMARK 3 S31: -0.2056 S32: 0.0983 S33: 0.0466 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.7498 -83.9152-116.5934 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.0984 REMARK 3 T33: 0.2211 T12: 0.0321 REMARK 3 T13: -0.0096 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.7116 L22: 1.4031 REMARK 3 L33: 1.2837 L12: 0.3458 REMARK 3 L13: -0.4292 L23: 0.1702 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0203 S13: 0.1751 REMARK 3 S21: 0.0046 S22: 0.0279 S23: -0.0903 REMARK 3 S31: 0.0210 S32: 0.0371 S33: -0.0169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000225070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71901 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MM LITHIUM SULFATE, 27% W/V PEG REMARK 280 3350, AND 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY SEC-MALS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 350 REMARK 465 LEU C 351 REMARK 465 VAL C 352 REMARK 465 PRO C 353 REMARK 465 ARG C 354 REMARK 465 GLY C 355 REMARK 465 SER C 356 REMARK 465 ALA C 357 REMARK 465 ALA C 358 REMARK 465 ALA C 359 REMARK 465 ALA C 360 REMARK 465 LEU C 361 REMARK 465 GLU C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 465 HIS C 365 REMARK 465 HIS C 366 REMARK 465 HIS C 367 REMARK 465 HIS C 368 REMARK 465 LYS A 350 REMARK 465 LEU A 351 REMARK 465 VAL A 352 REMARK 465 PRO A 353 REMARK 465 ARG A 354 REMARK 465 GLY A 355 REMARK 465 SER A 356 REMARK 465 ALA A 357 REMARK 465 ALA A 358 REMARK 465 ALA A 359 REMARK 465 ALA A 360 REMARK 465 LEU A 361 REMARK 465 GLU A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 506 O HOH A 507 2.12 REMARK 500 O HOH C 512 O HOH C 671 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 671 O HOH A 578 1545 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR C 312 CD1 TYR C 312 CE1 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 124 68.87 21.85 REMARK 500 ALA C 176 -1.77 68.12 REMARK 500 SER C 212 2.10 -67.19 REMARK 500 ASP A 40 57.95 -91.64 REMARK 500 ASP A 44 -166.82 -103.16 REMARK 500 ASN A 124 71.52 20.34 REMARK 500 ALA A 176 -2.28 71.79 REMARK 500 ARG A 206 -166.75 -109.23 REMARK 500 SER A 212 4.60 -67.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 207 GLY C 208 -145.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TZK RELATED DB: PDB REMARK 900 RELATED ID: 5TZ8 RELATED DB: PDB REMARK 900 RELATED ID: 5TZE RELATED DB: PDB REMARK 900 RELATED ID: 5TZI RELATED DB: PDB REMARK 900 RELATED ID: 5U02 RELATED DB: PDB DBREF1 5TZJ C 1 349 UNP A0A181F8T0_STAAU DBREF2 5TZJ C A0A181F8T0 2 350 DBREF1 5TZJ A 1 349 UNP A0A181F8T0_STAAU DBREF2 5TZJ A A0A181F8T0 2 350 SEQADV 5TZJ LYS C 350 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ LEU C 351 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ VAL C 352 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ PRO C 353 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ARG C 354 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ GLY C 355 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ SER C 356 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA C 357 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA C 358 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA C 359 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA C 360 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ LEU C 361 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ GLU C 362 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS C 363 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS C 364 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS C 365 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS C 366 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS C 367 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS C 368 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ LYS A 350 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ LEU A 351 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ VAL A 352 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ PRO A 353 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ARG A 354 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ GLY A 355 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ SER A 356 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA A 357 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA A 358 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA A 359 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ ALA A 360 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ LEU A 361 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ GLU A 362 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS A 363 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS A 364 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS A 365 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS A 366 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS A 367 UNP A0A181F8T EXPRESSION TAG SEQADV 5TZJ HIS A 368 UNP A0A181F8T EXPRESSION TAG SEQRES 1 C 368 MET LYS PHE SER VAL ILE VAL PRO THR TYR ASN SER GLU SEQRES 2 C 368 LYS TYR ILE THR GLU LEU LEU ASN SER LEU ALA LYS GLN SEQRES 3 C 368 ASP PHE PRO LYS THR GLU PHE GLU VAL VAL VAL VAL ASP SEQRES 4 C 368 ASP CYS SER THR ASP GLN THR LEU GLN ILE VAL GLU LYS SEQRES 5 C 368 TYR ARG ASN LYS LEU ASN LEU LYS VAL SER GLN LEU GLU SEQRES 6 C 368 THR ASN SER GLY GLY PRO GLY LYS PRO ARG ASN VAL ALA SEQRES 7 C 368 LEU LYS GLN ALA GLU GLY GLU PHE VAL LEU PHE VAL ASP SEQRES 8 C 368 SER ASP ASP TYR ILE ASN LYS GLU THR LEU LYS ASP ALA SEQRES 9 C 368 ALA ALA PHE ILE ASP GLU HIS HIS SER ASP VAL LEU LEU SEQRES 10 C 368 ILE LYS MET LYS GLY VAL ASN GLY ARG GLY VAL PRO GLN SEQRES 11 C 368 SER MET PHE LYS GLU THR ALA PRO GLU VAL THR LEU LEU SEQRES 12 C 368 ASN SER ARG ILE ILE TYR THR LEU SER PRO THR LYS ILE SEQRES 13 C 368 TYR ARG THR ALA LEU LEU LYS ASP ASN ASP ILE TYR PHE SEQRES 14 C 368 PRO GLU GLU LEU LYS SER ALA GLU ASP GLN LEU PHE THR SEQRES 15 C 368 MET LYS ALA TYR LEU ASN ALA ASN ARG ILE SER VAL LEU SEQRES 16 C 368 SER ASP LYS ALA TYR TYR TYR ALA THR LYS ARG GLU GLY SEQRES 17 C 368 GLU HIS MET SER SER ALA TYR VAL SER PRO GLU ASP PHE SEQRES 18 C 368 TYR GLU VAL MET ARG LEU ILE ALA VAL GLU ILE LEU ASN SEQRES 19 C 368 ALA ASP LEU GLU GLU ALA HIS LYS ASP GLN ILE LEU ALA SEQRES 20 C 368 GLU PHE LEU ASN ARG HIS PHE SER PHE SER ARG THR ASN SEQRES 21 C 368 GLY PHE SER LEU LYS VAL LYS LEU GLU GLU GLN PRO GLN SEQRES 22 C 368 TRP ILE ASN ALA LEU GLY ASP PHE ILE GLN ALA VAL PRO SEQRES 23 C 368 GLU ARG VAL ASP ALA LEU VAL MET SER LYS LEU ARG PRO SEQRES 24 C 368 LEU LEU HIS TYR ALA ARG ALA LYS ASP ILE ASP ASN TYR SEQRES 25 C 368 ARG THR VAL GLU GLU SER TYR ARG GLN GLY GLN TYR TYR SEQRES 26 C 368 ARG PHE ASP ILE VAL ASP GLY LYS LEU ASN ILE GLN PHE SEQRES 27 C 368 ASN GLU GLY GLU PRO TYR PHE GLU GLY ILE ASP LYS LEU SEQRES 28 C 368 VAL PRO ARG GLY SER ALA ALA ALA ALA LEU GLU HIS HIS SEQRES 29 C 368 HIS HIS HIS HIS SEQRES 1 A 368 MET LYS PHE SER VAL ILE VAL PRO THR TYR ASN SER GLU SEQRES 2 A 368 LYS TYR ILE THR GLU LEU LEU ASN SER LEU ALA LYS GLN SEQRES 3 A 368 ASP PHE PRO LYS THR GLU PHE GLU VAL VAL VAL VAL ASP SEQRES 4 A 368 ASP CYS SER THR ASP GLN THR LEU GLN ILE VAL GLU LYS SEQRES 5 A 368 TYR ARG ASN LYS LEU ASN LEU LYS VAL SER GLN LEU GLU SEQRES 6 A 368 THR ASN SER GLY GLY PRO GLY LYS PRO ARG ASN VAL ALA SEQRES 7 A 368 LEU LYS GLN ALA GLU GLY GLU PHE VAL LEU PHE VAL ASP SEQRES 8 A 368 SER ASP ASP TYR ILE ASN LYS GLU THR LEU LYS ASP ALA SEQRES 9 A 368 ALA ALA PHE ILE ASP GLU HIS HIS SER ASP VAL LEU LEU SEQRES 10 A 368 ILE LYS MET LYS GLY VAL ASN GLY ARG GLY VAL PRO GLN SEQRES 11 A 368 SER MET PHE LYS GLU THR ALA PRO GLU VAL THR LEU LEU SEQRES 12 A 368 ASN SER ARG ILE ILE TYR THR LEU SER PRO THR LYS ILE SEQRES 13 A 368 TYR ARG THR ALA LEU LEU LYS ASP ASN ASP ILE TYR PHE SEQRES 14 A 368 PRO GLU GLU LEU LYS SER ALA GLU ASP GLN LEU PHE THR SEQRES 15 A 368 MET LYS ALA TYR LEU ASN ALA ASN ARG ILE SER VAL LEU SEQRES 16 A 368 SER ASP LYS ALA TYR TYR TYR ALA THR LYS ARG GLU GLY SEQRES 17 A 368 GLU HIS MET SER SER ALA TYR VAL SER PRO GLU ASP PHE SEQRES 18 A 368 TYR GLU VAL MET ARG LEU ILE ALA VAL GLU ILE LEU ASN SEQRES 19 A 368 ALA ASP LEU GLU GLU ALA HIS LYS ASP GLN ILE LEU ALA SEQRES 20 A 368 GLU PHE LEU ASN ARG HIS PHE SER PHE SER ARG THR ASN SEQRES 21 A 368 GLY PHE SER LEU LYS VAL LYS LEU GLU GLU GLN PRO GLN SEQRES 22 A 368 TRP ILE ASN ALA LEU GLY ASP PHE ILE GLN ALA VAL PRO SEQRES 23 A 368 GLU ARG VAL ASP ALA LEU VAL MET SER LYS LEU ARG PRO SEQRES 24 A 368 LEU LEU HIS TYR ALA ARG ALA LYS ASP ILE ASP ASN TYR SEQRES 25 A 368 ARG THR VAL GLU GLU SER TYR ARG GLN GLY GLN TYR TYR SEQRES 26 A 368 ARG PHE ASP ILE VAL ASP GLY LYS LEU ASN ILE GLN PHE SEQRES 27 A 368 ASN GLU GLY GLU PRO TYR PHE GLU GLY ILE ASP LYS LEU SEQRES 28 A 368 VAL PRO ARG GLY SER ALA ALA ALA ALA LEU GLU HIS HIS SEQRES 29 A 368 HIS HIS HIS HIS HET UD1 C 401 39 HET UD1 A 401 39 HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 3 UD1 2(C17 H27 N3 O17 P2) FORMUL 5 HOH *364(H2 O) HELIX 1 AA1 TYR C 15 LYS C 25 1 11 HELIX 2 AA2 PRO C 29 THR C 31 5 3 HELIX 3 AA3 GLN C 45 LYS C 52 1 8 HELIX 4 AA4 PRO C 71 ALA C 82 1 12 HELIX 5 AA5 GLU C 99 HIS C 112 1 14 HELIX 6 AA6 ARG C 146 THR C 150 5 5 HELIX 7 AA7 THR C 159 ASN C 165 1 7 HELIX 8 AA8 ALA C 176 ALA C 189 1 14 HELIX 9 AA9 HIS C 210 ALA C 214 5 5 HELIX 10 AB1 SER C 217 ASN C 234 1 18 HELIX 11 AB2 GLU C 238 SER C 257 1 20 HELIX 12 AB3 GLY C 261 VAL C 266 1 6 HELIX 13 AB4 LYS C 267 GLU C 269 5 3 HELIX 14 AB5 GLU C 270 GLN C 283 1 14 HELIX 15 AB6 ALA C 284 VAL C 285 5 2 HELIX 16 AB7 PRO C 286 VAL C 293 5 8 HELIX 17 AB8 MET C 294 LYS C 296 5 3 HELIX 18 AB9 LEU C 297 ALA C 306 1 10 HELIX 19 AC1 ASP C 308 GLY C 322 1 15 HELIX 20 AC2 TYR A 15 LYS A 25 1 11 HELIX 21 AC3 GLN A 45 LYS A 52 1 8 HELIX 22 AC4 PRO A 71 ALA A 82 1 12 HELIX 23 AC5 GLU A 99 HIS A 112 1 14 HELIX 24 AC6 ARG A 146 THR A 150 5 5 HELIX 25 AC7 THR A 159 ASN A 165 1 7 HELIX 26 AC8 ALA A 176 ALA A 189 1 14 HELIX 27 AC9 HIS A 210 ALA A 214 5 5 HELIX 28 AD1 SER A 217 ASN A 234 1 18 HELIX 29 AD2 GLU A 238 SER A 257 1 20 HELIX 30 AD3 GLY A 261 VAL A 266 1 6 HELIX 31 AD4 LYS A 267 GLU A 269 5 3 HELIX 32 AD5 GLU A 270 GLN A 283 1 14 HELIX 33 AD6 ALA A 284 VAL A 285 5 2 HELIX 34 AD7 PRO A 286 VAL A 293 5 8 HELIX 35 AD8 MET A 294 LYS A 296 5 3 HELIX 36 AD9 LEU A 297 ALA A 306 1 10 HELIX 37 AE1 ASP A 308 GLY A 322 1 15 SHEET 1 AA1 8 LEU C 59 GLN C 63 0 SHEET 2 AA1 8 PHE C 33 ASP C 39 1 N VAL C 37 O LYS C 60 SHEET 3 AA1 8 PHE C 3 THR C 9 1 N VAL C 5 O VAL C 36 SHEET 4 AA1 8 PHE C 86 PHE C 89 1 O LEU C 88 N ILE C 6 SHEET 5 AA1 8 ILE C 156 ARG C 158 -1 O TYR C 157 N VAL C 87 SHEET 6 AA1 8 VAL C 115 ILE C 118 -1 N LEU C 116 O ILE C 156 SHEET 7 AA1 8 ILE C 192 LEU C 195 1 O LEU C 195 N LEU C 117 SHEET 8 AA1 8 ALA C 137 VAL C 140 -1 N ALA C 137 O VAL C 194 SHEET 1 AA2 3 TYR C 95 ILE C 96 0 SHEET 2 AA2 3 TYR C 201 ALA C 203 -1 O TYR C 202 N TYR C 95 SHEET 3 AA2 3 MET C 120 GLY C 122 1 N LYS C 121 O TYR C 201 SHEET 1 AA3 3 ARG C 326 VAL C 330 0 SHEET 2 AA3 3 LYS C 333 GLN C 337 -1 O ASN C 335 N ASP C 328 SHEET 3 AA3 3 TYR C 344 ILE C 348 -1 O PHE C 345 N ILE C 336 SHEET 1 AA4 8 LEU A 59 GLN A 63 0 SHEET 2 AA4 8 PHE A 33 ASP A 39 1 N ASP A 39 O SER A 62 SHEET 3 AA4 8 PHE A 3 THR A 9 1 N VAL A 5 O GLU A 34 SHEET 4 AA4 8 PHE A 86 PHE A 89 1 O LEU A 88 N ILE A 6 SHEET 5 AA4 8 ILE A 156 ARG A 158 -1 O TYR A 157 N VAL A 87 SHEET 6 AA4 8 VAL A 115 ILE A 118 -1 N LEU A 116 O ILE A 156 SHEET 7 AA4 8 ILE A 192 LEU A 195 1 O LEU A 195 N LEU A 117 SHEET 8 AA4 8 ALA A 137 VAL A 140 -1 N VAL A 140 O ILE A 192 SHEET 1 AA5 3 TYR A 95 ILE A 96 0 SHEET 2 AA5 3 TYR A 201 ALA A 203 -1 O TYR A 202 N TYR A 95 SHEET 3 AA5 3 MET A 120 GLY A 122 1 N LYS A 121 O TYR A 201 SHEET 1 AA6 3 ARG A 326 VAL A 330 0 SHEET 2 AA6 3 LYS A 333 GLN A 337 -1 O GLN A 337 N ARG A 326 SHEET 3 AA6 3 TYR A 344 ILE A 348 -1 O PHE A 345 N ILE A 336 SITE 1 AC1 29 PRO C 8 THR C 9 TYR C 10 SER C 12 SITE 2 AC1 29 ASP C 40 ASN C 67 GLY C 70 PRO C 71 SITE 3 AC1 29 PRO C 74 ARG C 75 ASP C 91 SER C 92 SITE 4 AC1 29 ASP C 93 ARG C 126 SER C 152 PRO C 153 SITE 5 AC1 29 SER C 175 GLU C 177 ARG C 206 GLU C 209 SITE 6 AC1 29 HIS C 210 MET C 211 SER C 212 HOH C 503 SITE 7 AC1 29 HOH C 504 HOH C 513 HOH C 517 HOH C 551 SITE 8 AC1 29 HOH C 635 SITE 1 AC2 29 PRO A 8 THR A 9 TYR A 10 SER A 12 SITE 2 AC2 29 ASP A 40 ASN A 67 GLY A 70 PRO A 71 SITE 3 AC2 29 PRO A 74 ARG A 75 ASP A 91 SER A 92 SITE 4 AC2 29 ASP A 93 ARG A 126 SER A 152 PRO A 153 SITE 5 AC2 29 SER A 175 ALA A 176 GLU A 177 ASP A 178 SITE 6 AC2 29 ARG A 206 HIS A 210 MET A 211 SER A 212 SITE 7 AC2 29 HOH A 506 HOH A 507 HOH A 521 HOH A 537 SITE 8 AC2 29 HOH A 609 CRYST1 57.002 57.370 86.786 83.03 84.55 62.26 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017543 -0.009225 -0.000868 0.00000 SCALE2 0.000000 0.019694 -0.001733 0.00000 SCALE3 0.000000 0.000000 0.011620 0.00000