HEADER APOPTOSIS 22-NOV-16 5TZP TITLE CRYSTAL STRUCTURE OF FPV039:BIK BH3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN FPV039; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BIK; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 43-67; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOWLPOX VIRUS (STRAIN NVSL); SOURCE 3 ORGANISM_COMMON: FPV; SOURCE 4 ORGANISM_TAXID: 928301; SOURCE 5 STRAIN: NVSL; SOURCE 6 GENE: FPV039; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 8 PPPARG4; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 14 ORGANISM_COMMON: CHICKEN; SOURCE 15 ORGANISM_TAXID: 9031 KEYWDS BCL-2, APOPTOSIS, FOWLPOX, POXVIRUS, BH3-ONLY EXPDTA X-RAY DIFFRACTION AUTHOR M.I.ANASIR,M.KVANSAKUL REVDAT 4 03-APR-24 5TZP 1 LINK REVDAT 3 01-JAN-20 5TZP 1 REMARK REVDAT 2 14-JUN-17 5TZP 1 JRNL REVDAT 1 03-MAY-17 5TZP 0 JRNL AUTH M.I.ANASIR,S.CARIA,M.A.SKINNER,M.KVANSAKUL JRNL TITL STRUCTURAL BASIS OF APOPTOSIS INHIBITION BY THE FOWLPOX JRNL TITL 2 VIRUS PROTEIN FPV039. JRNL REF J. BIOL. CHEM. V. 292 9010 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28411240 JRNL DOI 10.1074/JBC.M116.768879 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2464 - 3.1739 1.00 2744 125 0.1519 0.1572 REMARK 3 2 3.1739 - 2.5193 1.00 2706 126 0.1427 0.1719 REMARK 3 3 2.5193 - 2.2009 1.00 2700 142 0.1212 0.1415 REMARK 3 4 2.2009 - 1.9996 1.00 2662 155 0.1211 0.1755 REMARK 3 5 1.9996 - 1.8563 1.00 2730 102 0.1277 0.1297 REMARK 3 6 1.8563 - 1.7469 1.00 2707 137 0.1344 0.1384 REMARK 3 7 1.7469 - 1.6594 1.00 2613 167 0.1382 0.1818 REMARK 3 8 1.6594 - 1.5872 1.00 2677 149 0.1500 0.1954 REMARK 3 9 1.5872 - 1.5261 1.00 2640 151 0.1630 0.1889 REMARK 3 10 1.5261 - 1.4734 1.00 2669 142 0.1786 0.1952 REMARK 3 11 1.4734 - 1.4273 1.00 2707 131 0.1975 0.2677 REMARK 3 12 1.4273 - 1.3865 1.00 2654 161 0.2266 0.2704 REMARK 3 13 1.3865 - 1.3500 1.00 2661 149 0.2715 0.2997 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 1447 REMARK 3 ANGLE : 1.831 1958 REMARK 3 CHIRALITY : 0.103 212 REMARK 3 PLANARITY : 0.013 239 REMARK 3 DIHEDRAL : 20.092 529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7773 15.4284 -6.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.0702 REMARK 3 T33: 0.1543 T12: 0.0085 REMARK 3 T13: 0.0224 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.1310 L22: 2.7559 REMARK 3 L33: 3.6942 L12: -0.1368 REMARK 3 L13: 0.1921 L23: -1.3668 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.0550 S13: -0.3501 REMARK 3 S21: 0.0138 S22: -0.0075 S23: 0.1043 REMARK 3 S31: 0.4289 S32: -0.0083 S33: 0.0192 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4087 27.9676 -9.3004 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0714 REMARK 3 T33: 0.1117 T12: 0.0029 REMARK 3 T13: 0.0018 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.3157 L22: 1.7774 REMARK 3 L33: 1.6109 L12: 0.9297 REMARK 3 L13: -0.8402 L23: -1.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.0598 S13: 0.0050 REMARK 3 S21: -0.0172 S22: -0.0029 S23: 0.0764 REMARK 3 S31: -0.0232 S32: -0.1199 S33: 0.0116 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9879 21.7173 -2.9901 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.2179 REMARK 3 T33: 0.2152 T12: 0.0145 REMARK 3 T13: -0.0104 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.1068 L22: 0.1287 REMARK 3 L33: 2.1714 L12: -0.2115 REMARK 3 L13: -1.3199 L23: 0.1136 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: -0.3151 S13: 0.1390 REMARK 3 S21: -0.0270 S22: 0.0609 S23: -0.2045 REMARK 3 S31: -0.0001 S32: 0.5041 S33: -0.0057 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1193 22.4678 -13.6667 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0762 REMARK 3 T33: 0.1119 T12: 0.0071 REMARK 3 T13: -0.0042 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.6639 L22: 0.5078 REMARK 3 L33: 2.8331 L12: -0.5022 REMARK 3 L13: -1.1945 L23: 1.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.0562 S13: -0.0188 REMARK 3 S21: -0.0360 S22: -0.0292 S23: 0.0563 REMARK 3 S31: -0.0204 S32: -0.0337 S33: 0.0593 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2264 19.1470 2.0192 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0923 REMARK 3 T33: 0.1134 T12: 0.0061 REMARK 3 T13: 0.0117 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.8515 L22: 1.2009 REMARK 3 L33: 2.1738 L12: -0.8825 REMARK 3 L13: -1.0447 L23: 0.4337 REMARK 3 S TENSOR REMARK 3 S11: -0.1520 S12: -0.1977 S13: -0.1215 REMARK 3 S21: 0.1479 S22: 0.1259 S23: 0.0750 REMARK 3 S31: 0.2228 S32: 0.0975 S33: 0.0148 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3925 31.0464 -4.5461 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.2707 REMARK 3 T33: 0.2712 T12: 0.0487 REMARK 3 T13: -0.0313 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.8057 L22: 2.3270 REMARK 3 L33: 1.1946 L12: -2.0478 REMARK 3 L13: 1.4403 L23: -1.6191 REMARK 3 S TENSOR REMARK 3 S11: 0.2736 S12: 0.2954 S13: 0.0065 REMARK 3 S21: 0.1700 S22: -0.4693 S23: -1.0160 REMARK 3 S31: 0.1360 S32: 0.8369 S33: 0.4056 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5168 32.9359 0.4923 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1828 REMARK 3 T33: 0.1965 T12: -0.0324 REMARK 3 T13: -0.0066 T23: -0.0830 REMARK 3 L TENSOR REMARK 3 L11: 2.8332 L22: 1.0265 REMARK 3 L33: 1.5293 L12: 0.3899 REMARK 3 L13: 1.1160 L23: -0.8744 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: -0.3506 S13: 0.4839 REMARK 3 S21: 0.0110 S22: -0.2200 S23: 0.2319 REMARK 3 S31: -0.0961 S32: -0.4501 S33: 0.0628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000225046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 1.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: FPV039 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM CHLORIDE, 20% W/V PEG REMARK 280 3350, PH 6.8, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.15150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.72725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.57575 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 SER B 65 REMARK 465 ARG B 66 REMARK 465 LYS B 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 101 O HOH A 308 1.55 REMARK 500 HG SER A 97 O TYR A 108 1.60 REMARK 500 NE2 HIS B 51 O HOH B 101 1.92 REMARK 500 O HOH A 303 O HOH A 409 1.99 REMARK 500 O HOH A 387 O HOH B 111 2.00 REMARK 500 O HOH A 401 O HOH A 432 2.05 REMARK 500 O1 EDO A 207 O HOH A 301 2.06 REMARK 500 OG SER A 38 O HOH A 302 2.17 REMARK 500 O SER A 64 O HOH A 303 2.17 REMARK 500 OD1 ASN B 61 O HOH B 102 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR A 96 HE1 HIS B 51 3654 0.94 REMARK 500 HH TYR A 56 HD22 ASN A 143 3664 1.09 REMARK 500 HH12 ARG B 62 O4 SO4 A 213 4565 1.10 REMARK 500 HH TYR A 96 HE2 HIS B 51 3654 1.11 REMARK 500 HE22 GLN B 48 HO1 EDO A 207 4565 1.22 REMARK 500 HH11 ARG B 62 O4 SO4 A 213 4565 1.33 REMARK 500 OD2 ASP A 103 HO2 EDO A 202 3654 1.57 REMARK 500 O HOH A 407 O HOH A 433 2564 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 109 CE1 TYR A 109 CZ -0.078 REMARK 500 TYR A 109 CZ TYR A 109 OH 0.111 REMARK 500 TYR A 141 CG TYR A 141 CD2 -0.089 REMARK 500 ASN A 143 CA ASN A 143 CB -0.202 REMARK 500 ASN A 143 CG ASN A 143 ND2 -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 58 OE1 - CD - OE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 68 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 109 CG - CD2 - CE2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASN A 143 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 -165.16 -102.04 REMARK 500 PRO A 106 43.80 -87.30 REMARK 500 TYR A 134 -126.94 60.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 142 ASN A 143 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TZQ RELATED DB: PDB DBREF 5TZP A 1 143 UNP Q9J5G4 V039_FOWPN 1 143 DBREF 5TZP B 43 67 UNP E1C005 E1C005_CHICK 43 67 SEQADV 5TZP GLY A -4 UNP Q9J5G4 EXPRESSION TAG SEQADV 5TZP PRO A -3 UNP Q9J5G4 EXPRESSION TAG SEQADV 5TZP LEU A -2 UNP Q9J5G4 EXPRESSION TAG SEQADV 5TZP GLY A -1 UNP Q9J5G4 EXPRESSION TAG SEQADV 5TZP SER A 0 UNP Q9J5G4 EXPRESSION TAG SEQRES 1 A 148 GLY PRO LEU GLY SER MET ALA SER SER ASN MET LYS ASP SEQRES 2 A 148 GLU THR TYR TYR ILE ALA LEU ASN MET ILE GLN ASN TYR SEQRES 3 A 148 ILE ILE GLU TYR ASN THR ASN LYS PRO ARG LYS SER PHE SEQRES 4 A 148 VAL ILE ASP SER ILE SER TYR ASP VAL LEU LYS ALA ALA SEQRES 5 A 148 CYS LYS SER VAL ILE LYS THR ASN TYR ASN GLU PHE ASP SEQRES 6 A 148 ILE ILE ILE SER ARG ASN ILE ASP PHE ASN VAL ILE VAL SEQRES 7 A 148 THR GLN VAL LEU GLU ASP LYS ILE ASN TRP GLY ARG ILE SEQRES 8 A 148 ILE THR ILE ILE ALA PHE CYS ALA TYR TYR SER LYS LYS SEQRES 9 A 148 VAL LYS GLN ASP THR SER PRO GLN TYR TYR ASP GLY ILE SEQRES 10 A 148 ILE SER GLU ALA ILE THR ASP ALA ILE LEU SER LYS TYR SEQRES 11 A 148 ARG SER TRP PHE ILE ASP GLN ASP TYR TRP ASN GLY ILE SEQRES 12 A 148 ARG ILE TYR LYS ASN SEQRES 1 B 25 ILE SER SER ALA ILE GLN VAL GLY HIS GLN LEU ALA LEU SEQRES 2 B 25 ILE GLY ASP GLU PHE ASN ARG ALA TYR SER ARG LYS HET EDO A 201 10 HET EDO A 202 10 HET EDO A 203 10 HET EDO A 204 10 HET EDO A 205 10 HET EDO A 206 10 HET EDO A 207 10 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET SO4 A 211 5 HET SO4 A 212 5 HET SO4 A 213 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 SO4 6(O4 S 2-) FORMUL 16 HOH *195(H2 O) HELIX 1 AA1 ASP A 8 ASN A 28 1 21 HELIX 2 AA2 ARG A 31 VAL A 35 5 5 HELIX 3 AA3 ASP A 37 SER A 64 1 28 HELIX 4 AA4 ASP A 68 LEU A 77 1 10 HELIX 5 AA5 ASN A 82 LYS A 101 1 20 HELIX 6 AA6 TYR A 109 GLN A 132 1 24 HELIX 7 AA7 ASP A 133 LYS A 142 5 10 HELIX 8 AA8 GLN B 48 TYR B 64 1 17 LINK O4 SO4 A 213 NH1 ARG B 62 4565 1555 1.31 SITE 1 AC1 7 ILE A 67 ASP A 68 PHE A 69 ARG A 85 SITE 2 AC1 7 TYR A 96 EDO A 205 HIS B 51 SITE 1 AC2 8 GLU A 58 ILE A 61 ILE A 62 ARG A 65 SITE 2 AC2 8 ASP A 103 HOH A 387 ILE B 43 GLN B 52 SITE 1 AC3 6 ILE A 13 ASN A 16 VAL A 35 ILE A 36 SITE 2 AC3 6 ASP A 37 HOH A 332 SITE 1 AC4 4 SER A 64 LYS A 142 HOH A 309 HOH A 316 SITE 1 AC5 10 ASN A 66 GLN A 75 VAL A 76 GLU A 78 SITE 2 AC5 10 ASP A 79 LYS A 80 ARG A 85 EDO A 201 SITE 3 AC5 10 HOH A 304 HOH B 103 SITE 1 AC6 4 LYS A 142 ASN A 143 HOH A 370 HOH A 378 SITE 1 AC7 5 ARG A 65 ASN A 66 HOH A 301 HOH A 307 SITE 2 AC7 5 GLN B 48 SITE 1 AC8 3 ARG A 65 ARG A 139 HOH B 113 SITE 1 AC9 4 GLN A 19 ASN A 20 ARG A 31 HOH A 320 SITE 1 AD1 3 LYS A 29 LYS A 80 ASN A 82 SITE 1 AD2 4 ILE A 52 TYR A 56 TYR A 95 HOH A 331 SITE 1 AD3 6 GLN A 75 HOH A 305 HOH A 310 HOH A 311 SITE 2 AD3 6 GLN B 48 VAL B 49 SITE 1 AD4 4 GLN A 19 GLY A 111 HOH A 340 ARG B 62 CRYST1 47.848 47.848 74.303 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020900 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013458 0.00000