HEADER VIRAL PROTEIN 22-NOV-16 5U04 TITLE CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 RNA-DEPENDENT RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZIKA VIRUS NS5 RDRP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NS5, ZIKA, VIRUS, RNA, POLYMERASE, DRUG, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.GODOY,G.M.A.LIMA,K.I.Z.OLIVEIRA,N.U.TORRES,F.V.MALUF,R.V.C.GUIDO, AUTHOR 2 G.OLIVA REVDAT 8 04-OCT-23 5U04 1 REMARK REVDAT 7 01-JAN-20 5U04 1 REMARK REVDAT 6 17-APR-19 5U04 1 REMARK REVDAT 5 26-APR-17 5U04 1 REMARK REVDAT 4 12-APR-17 5U04 1 JRNL REVDAT 3 05-APR-17 5U04 1 JRNL REVDAT 2 29-MAR-17 5U04 1 AUTHOR SPRSDE REVDAT 1 22-FEB-17 5U04 0 SPRSDE 29-MAR-17 5U04 5TIT JRNL AUTH A.S.GODOY,G.M.LIMA,K.I.OLIVEIRA,N.U.TORRES,F.V.MALUF, JRNL AUTH 2 R.V.GUIDO,G.OLIVA JRNL TITL CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 RNA-DEPENDENT RNA JRNL TITL 2 POLYMERASE. JRNL REF NAT COMMUN V. 8 14764 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28345596 JRNL DOI 10.1038/NCOMMS14764 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11RC2_2531: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6602 - 4.5741 1.00 3965 155 0.1972 0.2203 REMARK 3 2 4.5741 - 3.6327 1.00 3755 147 0.1505 0.1776 REMARK 3 3 3.6327 - 3.1741 1.00 3690 144 0.1574 0.1734 REMARK 3 4 3.1741 - 2.8841 1.00 3688 144 0.1764 0.2005 REMARK 3 5 2.8841 - 2.6776 1.00 3655 143 0.1780 0.2259 REMARK 3 6 2.6776 - 2.5198 1.00 3631 142 0.1750 0.1840 REMARK 3 7 2.5198 - 2.3936 1.00 3618 141 0.1733 0.1906 REMARK 3 8 2.3936 - 2.2895 1.00 3635 143 0.1773 0.2246 REMARK 3 9 2.2895 - 2.2014 1.00 3603 141 0.1758 0.1974 REMARK 3 10 2.2014 - 2.1254 1.00 3607 141 0.1776 0.2472 REMARK 3 11 2.1254 - 2.0590 1.00 3611 140 0.1922 0.2243 REMARK 3 12 2.0590 - 2.0002 0.99 3566 140 0.2176 0.2693 REMARK 3 13 2.0002 - 1.9475 1.00 3577 140 0.2342 0.2584 REMARK 3 14 1.9475 - 1.9000 0.99 3549 138 0.2646 0.2923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3989 REMARK 3 ANGLE : 0.575 5403 REMARK 3 CHIRALITY : 0.042 574 REMARK 3 PLANARITY : 0.003 686 REMARK 3 DIHEDRAL : 5.890 3241 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.5167 71.7656 104.8168 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.1525 REMARK 3 T33: 0.1575 T12: 0.0027 REMARK 3 T13: -0.0309 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.4815 L22: 0.7314 REMARK 3 L33: 0.7560 L12: -0.1049 REMARK 3 L13: 0.2406 L23: -0.2958 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0825 S13: -0.0560 REMARK 3 S21: 0.0392 S22: -0.0503 S23: -0.1426 REMARK 3 S31: 0.0206 S32: 0.1650 S33: 0.0241 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000225093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.47 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 24.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HCN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M SODIUM NITRATE, 0.3 SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.3M AMMONIUM SULFATE 1 M SODIUM HEPES; 1 M REMARK 280 MOPS (ACID) 40% V/V ETHYLENE GLYCOL; 20 % W/V PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.01100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.47700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.47700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 157.51650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.47700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.47700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.50550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.47700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.47700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 157.51650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.47700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.47700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.50550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.01100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 306 REMARK 465 HIS A 307 REMARK 465 GLY A 308 REMARK 465 SER A 309 REMARK 465 TYR A 310 REMARK 465 GLU A 311 REMARK 465 ALA A 312 REMARK 465 PRO A 313 REMARK 465 THR A 314 REMARK 465 GLN A 315 REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 SER A 320 REMARK 465 GLY A 341 REMARK 465 ILE A 342 REMARK 465 ALA A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 ASP A 346 REMARK 465 THR A 347 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 TYR A 350 REMARK 465 GLY A 351 REMARK 465 GLN A 352 REMARK 465 GLN A 353 REMARK 465 ARG A 354 REMARK 465 VAL A 355 REMARK 465 PHE A 356 REMARK 465 LYS A 357 REMARK 465 GLU A 358 REMARK 465 LYS A 359 REMARK 465 VAL A 360 REMARK 465 ASP A 361 REMARK 465 THR A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 409 REMARK 465 LEU A 410 REMARK 465 GLY A 411 REMARK 465 ALA A 412 REMARK 465 ILE A 413 REMARK 465 PHE A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 416 REMARK 465 MET A 455 REMARK 465 MET A 456 REMARK 465 GLY A 457 REMARK 465 LYS A 458 REMARK 465 ARG A 459 REMARK 465 GLU A 460 REMARK 465 LYS A 461 REMARK 465 LYS A 462 REMARK 465 GLN A 463 REMARK 465 GLY A 464 REMARK 465 GLU A 465 REMARK 465 PHE A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 ALA A 469 REMARK 465 LYS A 470 REMARK 465 ASP A 534 REMARK 465 ASP A 535 REMARK 465 THR A 536 REMARK 465 ALA A 537 REMARK 465 GLY A 538 REMARK 465 TRP A 539 REMARK 465 ASP A 540 REMARK 465 THR A 541 REMARK 465 LYS A 577 REMARK 465 VAL A 578 REMARK 465 VAL A 579 REMARK 465 LYS A 580 REMARK 465 VAL A 581 REMARK 465 LEU A 582 REMARK 465 ARG A 583 REMARK 465 PRO A 584 REMARK 465 ALA A 585 REMARK 465 GLU A 586 REMARK 465 GLY A 587 REMARK 465 GLY A 588 REMARK 465 LYS A 589 REMARK 465 THR A 590 REMARK 465 VAL A 591 REMARK 465 MET A 592 REMARK 465 ASP A 593 REMARK 465 ILE A 594 REMARK 465 ILE A 595 REMARK 465 SER A 596 REMARK 465 ARG A 597 REMARK 465 GLN A 598 REMARK 465 ASP A 599 REMARK 465 GLN A 600 REMARK 465 ARG A 601 REMARK 465 GLY A 602 REMARK 465 SER A 603 REMARK 465 GLY A 604 REMARK 465 GLN A 605 REMARK 465 ARG A 690 REMARK 465 LYS A 691 REMARK 465 ASP A 692 REMARK 465 THR A 693 REMARK 465 GLN A 694 REMARK 465 THR A 888 REMARK 465 GLN A 889 REMARK 465 VAL A 890 REMARK 465 ARG A 891 REMARK 465 TYR A 892 REMARK 465 LEU A 893 REMARK 465 GLY A 894 REMARK 465 GLU A 895 REMARK 465 GLU A 896 REMARK 465 GLY A 897 REMARK 465 SER A 898 REMARK 465 THR A 899 REMARK 465 PRO A 900 REMARK 465 GLY A 901 REMARK 465 VAL A 902 REMARK 465 LEU A 903 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 321 CG CD1 CD2 REMARK 470 GLU A 369 CG CD OE1 OE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 542 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 545 CE NZ REMARK 470 ARG A 640 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 748 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 748 CZ3 CH2 REMARK 470 LYS A 843 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1299 O HOH A 1488 2.10 REMARK 500 OE2 GLU A 398 O HOH A 1101 2.12 REMARK 500 O HOH A 1453 O HOH A 1715 2.12 REMARK 500 O HOH A 1448 O HOH A 1528 2.12 REMARK 500 O HOH A 1664 O HOH A 1715 2.13 REMARK 500 O HOH A 1213 O HOH A 1654 2.13 REMARK 500 O HOH A 1149 O HOH A 1590 2.15 REMARK 500 O HOH A 1257 O HOH A 1398 2.16 REMARK 500 O HOH A 1314 O HOH A 1542 2.16 REMARK 500 O HOH A 1416 O HOH A 1480 2.16 REMARK 500 O HOH A 1169 O HOH A 1398 2.17 REMARK 500 O HOH A 1386 O HOH A 1687 2.18 REMARK 500 O HOH A 1122 O HOH A 1520 2.18 REMARK 500 O HOH A 1635 O HOH A 1706 2.18 REMARK 500 O HOH A 1316 O HOH A 1499 2.19 REMARK 500 O SER A 406 O HOH A 1102 2.19 REMARK 500 O HOH A 1116 O HOH A 1520 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 330 42.39 -141.47 REMARK 500 HIS A 449 -52.65 -127.78 REMARK 500 ASP A 673 -169.76 -162.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1737 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1738 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1739 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1740 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1741 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1742 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1743 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1744 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1745 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1746 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1747 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1748 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1749 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1750 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1751 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1752 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1753 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1754 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1755 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A1756 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1757 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A1758 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1759 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1760 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A1761 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH A1762 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A1763 DISTANCE = 9.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 439 OE1 REMARK 620 2 HIS A 443 NE2 112.2 REMARK 620 3 CYS A 448 SG 100.5 115.0 REMARK 620 4 CYS A 451 SG 117.2 110.5 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 714 NE2 REMARK 620 2 CYS A 730 SG 116.0 REMARK 620 3 CYS A 849 SG 98.3 132.5 REMARK 620 4 HOH A1113 O 97.1 103.7 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1003 DBREF 5U04 A 306 903 UNP H8XX10 H8XX10_ZIKV 2826 3423 SEQRES 1 A 598 TYR HIS GLY SER TYR GLU ALA PRO THR GLN GLY SER ALA SEQRES 2 A 598 SER SER LEU VAL ASN GLY VAL VAL ARG LEU LEU SER LYS SEQRES 3 A 598 PRO TRP ASP VAL VAL THR GLY VAL THR GLY ILE ALA MET SEQRES 4 A 598 THR ASP THR THR PRO TYR GLY GLN GLN ARG VAL PHE LYS SEQRES 5 A 598 GLU LYS VAL ASP THR ARG VAL PRO ASP PRO GLN GLU GLY SEQRES 6 A 598 THR ARG GLN VAL MET ASN ILE VAL SER SER TRP LEU TRP SEQRES 7 A 598 LYS GLU LEU GLY LYS ARG LYS ARG PRO ARG VAL CYS THR SEQRES 8 A 598 LYS GLU GLU PHE ILE ASN LYS VAL ARG SER ASN ALA ALA SEQRES 9 A 598 LEU GLY ALA ILE PHE GLU GLU GLU LYS GLU TRP LYS THR SEQRES 10 A 598 ALA VAL GLU ALA VAL ASN ASP PRO ARG PHE TRP ALA LEU SEQRES 11 A 598 VAL ASP ARG GLU ARG GLU HIS HIS LEU ARG GLY GLU CYS SEQRES 12 A 598 HIS SER CYS VAL TYR ASN MET MET GLY LYS ARG GLU LYS SEQRES 13 A 598 LYS GLN GLY GLU PHE GLY LYS ALA LYS GLY SER ARG ALA SEQRES 14 A 598 ILE TRP TYR MET TRP LEU GLY ALA ARG PHE LEU GLU PHE SEQRES 15 A 598 GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP MET GLY SEQRES 16 A 598 ARG GLU ASN SER GLY GLY GLY VAL GLU GLY LEU GLY LEU SEQRES 17 A 598 GLN ARG LEU GLY TYR ILE LEU GLU GLU MET ASN ARG ALA SEQRES 18 A 598 PRO GLY GLY LYS MET TYR ALA ASP ASP THR ALA GLY TRP SEQRES 19 A 598 ASP THR ARG ILE SER LYS PHE ASP LEU GLU ASN GLU ALA SEQRES 20 A 598 LEU ILE THR ASN GLN MET GLU GLU GLY HIS ARG THR LEU SEQRES 21 A 598 ALA LEU ALA VAL ILE LYS TYR THR TYR GLN ASN LYS VAL SEQRES 22 A 598 VAL LYS VAL LEU ARG PRO ALA GLU GLY GLY LYS THR VAL SEQRES 23 A 598 MET ASP ILE ILE SER ARG GLN ASP GLN ARG GLY SER GLY SEQRES 24 A 598 GLN VAL VAL THR TYR ALA LEU ASN THR PHE THR ASN LEU SEQRES 25 A 598 VAL VAL GLN LEU ILE ARG ASN MET GLU ALA GLU GLU VAL SEQRES 26 A 598 LEU GLU MET GLN ASP LEU TRP LEU LEU ARG LYS PRO GLU SEQRES 27 A 598 LYS VAL THR ARG TRP LEU GLN SER ASN GLY TRP ASP ARG SEQRES 28 A 598 LEU LYS ARG MET ALA VAL SER GLY ASP ASP CYS VAL VAL SEQRES 29 A 598 LYS PRO ILE ASP ASP ARG PHE ALA HIS ALA LEU ARG PHE SEQRES 30 A 598 LEU ASN ASP MET GLY LYS VAL ARG LYS ASP THR GLN GLU SEQRES 31 A 598 TRP LYS PRO SER THR GLY TRP SER ASN TRP GLU GLU VAL SEQRES 32 A 598 PRO PHE CYS SER HIS HIS PHE ASN LYS LEU TYR LEU LYS SEQRES 33 A 598 ASP GLY ARG SER ILE VAL VAL PRO CYS ARG HIS GLN ASP SEQRES 34 A 598 GLU LEU ILE GLY ARG ALA ARG VAL SER PRO GLY ALA GLY SEQRES 35 A 598 TRP SER ILE ARG GLU THR ALA CYS LEU ALA LYS SER TYR SEQRES 36 A 598 ALA GLN MET TRP GLN LEU LEU TYR PHE HIS ARG ARG ASP SEQRES 37 A 598 LEU ARG LEU MET ALA ASN ALA ILE CYS SER ALA VAL PRO SEQRES 38 A 598 VAL ASP TRP VAL PRO THR GLY ARG THR THR TRP SER ILE SEQRES 39 A 598 HIS GLY LYS GLY GLU TRP MET THR THR GLU ASP MET LEU SEQRES 40 A 598 MET VAL TRP ASN ARG VAL TRP ILE GLU GLU ASN ASP HIS SEQRES 41 A 598 MET GLU ASP LYS THR PRO VAL THR LYS TRP THR ASP ILE SEQRES 42 A 598 PRO TYR LEU GLY LYS ARG GLU ASP LEU TRP CYS GLY SER SEQRES 43 A 598 LEU ILE GLY HIS ARG PRO ARG THR THR TRP ALA GLU ASN SEQRES 44 A 598 ILE LYS ASP THR VAL ASN MET VAL ARG ARG ILE ILE GLY SEQRES 45 A 598 ASP GLU GLU LYS TYR MET ASP TYR LEU SER THR GLN VAL SEQRES 46 A 598 ARG TYR LEU GLY GLU GLU GLY SER THR PRO GLY VAL LEU HET ZN A1001 1 HET ZN A1002 1 HET PO4 A1003 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *663(H2 O) HELIX 1 AA1 ASN A 323 LEU A 329 1 7 HELIX 2 AA2 SER A 330 VAL A 336 5 7 HELIX 3 AA3 GLN A 368 GLY A 387 1 20 HELIX 4 AA4 THR A 396 ARG A 405 1 10 HELIX 5 AA5 LYS A 418 ASP A 429 1 12 HELIX 6 AA6 ASP A 429 LEU A 444 1 16 HELIX 7 AA7 SER A 472 GLY A 491 1 20 HELIX 8 AA8 GLY A 491 ASP A 496 1 6 HELIX 9 AA9 GLY A 500 GLY A 505 1 6 HELIX 10 AB1 GLY A 512 ALA A 526 1 15 HELIX 11 AB2 SER A 544 ALA A 552 1 9 HELIX 12 AB3 LEU A 553 MET A 558 5 6 HELIX 13 AB4 GLU A 559 ASN A 576 1 18 HELIX 14 AB5 VAL A 607 GLU A 628 1 22 HELIX 15 AB6 GLU A 632 TRP A 637 5 6 HELIX 16 AB7 PRO A 642 LYS A 658 1 17 HELIX 17 AB8 ASP A 673 ALA A 679 5 7 HELIX 18 AB9 LEU A 680 MET A 686 1 7 HELIX 19 AC1 ASN A 704 VAL A 708 5 5 HELIX 20 AC2 HIS A 732 ARG A 741 1 10 HELIX 21 AC3 SER A 749 TYR A 768 1 20 HELIX 22 AC4 ARG A 771 VAL A 785 1 15 HELIX 23 AC5 ASP A 810 ILE A 820 1 11 HELIX 24 AC6 LYS A 834 ILE A 838 5 5 HELIX 25 AC7 GLY A 842 CYS A 849 1 8 HELIX 26 AC8 HIS A 855 ASN A 864 1 10 HELIX 27 AC9 ASN A 864 GLY A 877 1 14 SHEET 1 AA1 2 MET A 660 SER A 663 0 SHEET 2 AA1 2 ASP A 666 VAL A 669 -1 O ASP A 666 N SER A 663 SHEET 1 AA2 2 HIS A 714 TYR A 719 0 SHEET 2 AA2 2 SER A 725 CYS A 730 -1 O ILE A 726 N LEU A 718 LINK OE1 GLU A 439 ZN ZN A1002 1555 1555 1.99 LINK NE2 HIS A 443 ZN ZN A1002 1555 1555 2.02 LINK SG CYS A 448 ZN ZN A1002 1555 1555 2.12 LINK SG CYS A 451 ZN ZN A1002 1555 1555 2.33 LINK NE2 HIS A 714 ZN ZN A1001 1555 1555 2.03 LINK SG CYS A 730 ZN ZN A1001 1555 1555 2.36 LINK SG CYS A 849 ZN ZN A1001 1555 1555 2.38 LINK ZN ZN A1001 O HOH A1113 1555 1555 2.38 SITE 1 AC1 4 HIS A 714 CYS A 730 CYS A 849 HOH A1113 SITE 1 AC2 4 GLU A 439 HIS A 443 CYS A 448 CYS A 451 SITE 1 AC3 5 ARG A 731 ARG A 739 THR A 796 TRP A 797 SITE 2 AC3 5 HOH A1356 CRYST1 78.954 78.954 210.022 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004761 0.00000