HEADER OXIDOREDUCTASE 29-NOV-16 5U26 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDROFOLATE TITLE 2 REDUCTASE BOUND TO NADP AND P218 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: FOLA, FOLA_1, BN1213_03327, BN1303_00864, ERS007661_02580, SOURCE 5 ERS007663_03946, ERS007665_02766, ERS007741_00337, ERS013471_00736, SOURCE 6 ERS023446_01268, ERS024213_02711, ERS027644_04978, ERS027646_03318, SOURCE 7 ERS027653_04780, ERS027654_00299, ERS027656_00246, ERS027659_04151, SOURCE 8 ERS027661_03595, ERS027666_04095, ERS031537_04020, ERS124361_01473, SOURCE 9 RN05_2938; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DHFR, FOLATE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 2 FOR INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5U26 1 REMARK REVDAT 2 22-NOV-17 5U26 1 REMARK REVDAT 1 21-DEC-16 5U26 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 DIHYDROFOLATE REDUCTASE BOUND TO NADP AND P218 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1702 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 12959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4689 - 3.1628 1.00 2670 153 0.1367 0.1669 REMARK 3 2 3.1628 - 2.5106 0.99 2531 138 0.1574 0.1997 REMARK 3 3 2.5106 - 2.1934 0.97 2473 120 0.1523 0.2275 REMARK 3 4 2.1934 - 1.9928 0.96 2409 125 0.1490 0.2098 REMARK 3 5 1.9928 - 1.8500 0.89 2231 109 0.1625 0.2016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1431 REMARK 3 ANGLE : 1.724 1968 REMARK 3 CHIRALITY : 0.089 209 REMARK 3 PLANARITY : 0.015 246 REMARK 3 DIHEDRAL : 18.187 523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5579 -12.0994 5.8915 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.1044 REMARK 3 T33: 0.0993 T12: 0.0147 REMARK 3 T13: 0.0177 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.7484 L22: 2.9991 REMARK 3 L33: 5.3358 L12: -0.2544 REMARK 3 L13: -0.4671 L23: 3.4796 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: 0.1623 S13: -0.0709 REMARK 3 S21: 0.0037 S22: -0.1384 S23: 0.1538 REMARK 3 S31: 0.1827 S32: 0.0074 S33: 0.1734 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3327 3.0514 21.3626 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.0761 REMARK 3 T33: 0.0843 T12: -0.0204 REMARK 3 T13: 0.0113 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.3884 L22: 2.1975 REMARK 3 L33: 1.0786 L12: -1.1747 REMARK 3 L13: 0.1175 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.0026 S13: 0.0668 REMARK 3 S21: 0.1876 S22: 0.1173 S23: -0.1672 REMARK 3 S31: -0.2914 S32: 0.1573 S33: -0.1028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4850 -1.4312 8.9364 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.1092 REMARK 3 T33: 0.0769 T12: -0.0137 REMARK 3 T13: 0.0230 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.0989 L22: 1.8842 REMARK 3 L33: 2.1215 L12: -0.6605 REMARK 3 L13: 1.3612 L23: -0.9110 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: 0.0481 S13: 0.0533 REMARK 3 S21: -0.1235 S22: -0.0794 S23: -0.1169 REMARK 3 S31: -0.1818 S32: 0.2652 S33: 0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6899 4.1964 5.8827 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.1725 REMARK 3 T33: 0.1510 T12: -0.0201 REMARK 3 T13: -0.0050 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 3.4866 L22: 3.0157 REMARK 3 L33: 4.8794 L12: -2.0713 REMARK 3 L13: -1.4578 L23: 0.9085 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.0163 S13: 0.6041 REMARK 3 S21: 0.1359 S22: -0.1006 S23: -0.5854 REMARK 3 S31: -0.2930 S32: 0.3389 S33: -0.0433 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8681 7.4647 -1.2702 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.1051 REMARK 3 T33: 0.1014 T12: -0.0009 REMARK 3 T13: 0.0108 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.9562 L22: 4.6393 REMARK 3 L33: 3.9644 L12: -1.5582 REMARK 3 L13: 0.8836 L23: -0.2322 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: 0.1230 S13: 0.4112 REMARK 3 S21: -0.0934 S22: 0.0152 S23: -0.0898 REMARK 3 S31: -0.3738 S32: 0.1297 S33: -0.0263 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4096 -2.4946 -3.6241 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1627 REMARK 3 T33: 0.1151 T12: 0.0059 REMARK 3 T13: -0.0207 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.1495 L22: 7.6592 REMARK 3 L33: 1.0688 L12: -1.7894 REMARK 3 L13: 0.1172 L23: -1.4583 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.3407 S13: -0.1081 REMARK 3 S21: -0.6968 S22: 0.0353 S23: 0.3336 REMARK 3 S31: 0.2498 S32: 0.0433 S33: -0.0172 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7264 -5.0097 7.1392 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0839 REMARK 3 T33: 0.0626 T12: 0.0304 REMARK 3 T13: 0.0004 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.2969 L22: 3.1350 REMARK 3 L33: 2.0195 L12: 1.2761 REMARK 3 L13: -0.3523 L23: 0.6973 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: 0.2210 S13: 0.0744 REMARK 3 S21: -0.1587 S22: -0.0662 S23: 0.2088 REMARK 3 S31: -0.0093 S32: -0.0336 S33: 0.0027 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6229 -10.3260 15.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0737 REMARK 3 T33: 0.0849 T12: 0.0127 REMARK 3 T13: -0.0174 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.3242 L22: 2.6283 REMARK 3 L33: 3.1141 L12: 2.0645 REMARK 3 L13: 2.6386 L23: 2.5924 REMARK 3 S TENSOR REMARK 3 S11: 0.1753 S12: -0.0186 S13: -0.1432 REMARK 3 S21: 0.1428 S22: -0.0109 S23: -0.0469 REMARK 3 S31: 0.1577 S32: -0.0548 S33: -0.0692 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7958 3.4224 26.5486 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.1571 REMARK 3 T33: 0.1823 T12: 0.0548 REMARK 3 T13: 0.0346 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 6.4176 L22: 5.6542 REMARK 3 L33: 2.6013 L12: -6.0217 REMARK 3 L13: 4.0624 L23: -3.7971 REMARK 3 S TENSOR REMARK 3 S11: -0.3315 S12: -0.5510 S13: -0.0986 REMARK 3 S21: 0.4712 S22: 0.4866 S23: 0.4503 REMARK 3 S31: -0.3374 S32: -0.2330 S33: -0.0522 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2958 -12.6316 16.9923 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1201 REMARK 3 T33: 0.1822 T12: -0.0097 REMARK 3 T13: 0.0089 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.6877 L22: 1.0740 REMARK 3 L33: 1.5326 L12: 0.7536 REMARK 3 L13: 0.2306 L23: 0.1488 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: -0.1666 S13: -0.0876 REMARK 3 S21: 0.4164 S22: 0.0383 S23: 0.5999 REMARK 3 S31: 0.2119 S32: -0.1461 S33: -0.0891 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5757 -8.0026 28.2581 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.1141 REMARK 3 T33: 0.0724 T12: -0.0075 REMARK 3 T13: -0.0137 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 5.8502 L22: 4.2165 REMARK 3 L33: 5.4866 L12: 0.1075 REMARK 3 L13: 0.8792 L23: 2.0367 REMARK 3 S TENSOR REMARK 3 S11: 0.1905 S12: -0.1984 S13: 0.0800 REMARK 3 S21: 0.1217 S22: -0.1292 S23: -0.1920 REMARK 3 S31: 0.2098 S32: 0.0483 S33: 0.0012 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4621 -14.7872 17.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.0832 REMARK 3 T33: 0.1029 T12: -0.0206 REMARK 3 T13: -0.0055 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 4.3700 L22: 0.5366 REMARK 3 L33: 5.3414 L12: 0.1989 REMARK 3 L13: 4.0798 L23: 0.7900 REMARK 3 S TENSOR REMARK 3 S11: 0.3703 S12: -0.1245 S13: -0.2396 REMARK 3 S21: 0.1778 S22: -0.1893 S23: 0.1736 REMARK 3 S31: 0.4838 S32: -0.2039 S33: -0.2074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7DFR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYCOBACTERIUM TUBERCULOSIS DHFR, R9978 REMARK 280 AT 10 MG/ML, BATCH NUMBER BOS051006 AGAINST RIGAKUREAGENTS REMARK 280 AMMONIUM SULFATE SCREEN, CONDITION B10: 2.2M AMMONIUM SULFATE + REMARK 280 0.2M POTASSIUM ACETATE; 20% EG CRYO; CRYSTAL TRACKING ID REMARK 280 255057B10 (PUCK GEL2-3), PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.63000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.63000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 45 O HOH A 301 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 122 CD GLU A 122 OE2 -0.069 REMARK 500 HIS A 157 CA HIS A 157 C 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 45.79 -88.06 REMARK 500 LEU A 24 85.96 -151.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 79 10.35 REMARK 500 SER A 155 21.85 REMARK 500 SER A 155 21.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MMV A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYTUD.01062.A RELATED DB: TARGETTRACK DBREF1 5U26 A 1 159 UNP A0A0E8UVJ4_MYCTX DBREF2 5U26 A A0A0E8UVJ4 3 161 SEQADV 5U26 MET A -19 UNP A0A0E8UVJ INITIATING METHIONINE SEQADV 5U26 GLY A -18 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 SER A -17 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 SER A -16 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A -15 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A -14 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A -13 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A -12 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A -11 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A -10 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 SER A -9 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 SER A -8 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 GLY A -7 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 LEU A -6 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 VAL A -5 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 PRO A -4 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 ARG A -3 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 GLY A -2 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 SER A -1 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U26 HIS A 0 UNP A0A0E8UVJ EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET MMV A 201 26 HET NAP A 202 48 HET EDO A 203 4 HET SO4 A 204 5 HET SO4 A 205 5 HETNAM MMV 3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 MMV OXY]PROPOXY}PHENYL)PROPANOIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MMV C18 H24 N4 O4 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 EDO C2 H6 O2 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *124(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 1 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N VAL A 41 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N VAL A 41 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 CISPEP 1 ARG A 55 PRO A 56 0 5.55 CISPEP 2 GLY A 95 GLY A 96 0 0.24 SITE 1 AC1 13 ILE A 5 TRP A 6 ASP A 27 PHE A 31 SITE 2 AC1 13 ARG A 32 LEU A 50 LEU A 57 ARG A 60 SITE 3 AC1 13 ILE A 94 TYR A 100 NAP A 202 HOH A 305 SITE 4 AC1 13 HOH A 374 SITE 1 AC2 35 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC2 35 ARG A 16 GLY A 18 ASP A 19 ILE A 20 SITE 3 AC2 35 GLY A 43 ARG A 44 ARG A 45 THR A 46 SITE 4 AC2 35 SER A 49 LEU A 65 SER A 66 ARG A 67 SITE 5 AC2 35 GLN A 68 GLY A 80 ILE A 94 GLY A 96 SITE 6 AC2 35 GLY A 97 GLN A 98 VAL A 99 TYR A 100 SITE 7 AC2 35 LEU A 102 MMV A 201 EDO A 203 SO4 A 204 SITE 8 AC2 35 HOH A 301 HOH A 320 HOH A 321 HOH A 322 SITE 9 AC2 35 HOH A 331 HOH A 344 HOH A 384 SITE 1 AC3 6 ARG A 16 GLY A 17 GLY A 18 GLY A 124 SITE 2 AC3 6 NAP A 202 HOH A 306 SITE 1 AC4 6 PRO A 58 GLY A 59 SER A 81 LEU A 82 SITE 2 AC4 6 NAP A 202 HOH A 321 SITE 1 AC5 2 ARG A 44 ARG A 45 CRYST1 29.050 66.980 77.260 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012943 0.00000