HEADER TRANSCRIPTION 30-NOV-16 5U2D
TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN
TITLE 2 COMPLEX WITH OXABICYCLIC HEPTENE SULFONATE (OBHS)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ESTROGEN RECEPTOR;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, UNP RESIDUES 125-381;
COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3
COMPND 6 GROUP A MEMBER 1;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES;
COMPND 9 MOL_ID: 2;
COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2;
COMPND 11 CHAIN: C, D;
COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE;
COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75,
COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2;
COMPND 15 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ESR1, ESR, NR3A1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 MOL_ID: 2;
SOURCE 11 SYNTHETIC: YES;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS
KEYWDS PROTEIN LIGAND COMPLEX, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR J.C.NWACHUKWU,R.ERUMBI,J.NOWAK,K.E.CARLSON,J.A.KATZENELLENBOGEN,
AUTHOR 2 T.IZARD,K.W.NETTLES
REVDAT 3 06-MAR-24 5U2D 1 REMARK
REVDAT 2 22-NOV-17 5U2D 1 REMARK
REVDAT 1 05-APR-17 5U2D 0
JRNL AUTH J.D.STENDER,J.C.NWACHUKWU,I.KASTRATI,Y.KIM,T.STRID,M.YAKIR,
JRNL AUTH 2 S.SRINIVASAN,J.NOWAK,T.IZARD,E.S.RANGARAJAN,K.E.CARLSON,
JRNL AUTH 3 J.A.KATZENELLENBOGEN,X.Q.YAO,B.J.GRANT,H.S.LEONG,C.Y.LIN,
JRNL AUTH 4 J.FRASOR,K.W.NETTLES,C.K.GLASS
JRNL TITL STRUCTURAL AND MOLECULAR MECHANISMS OF CYTOKINE-MEDIATED
JRNL TITL 2 ENDOCRINE RESISTANCE IN HUMAN BREAST CANCER CELLS.
JRNL REF MOL. CELL V. 65 1122 2017
JRNL REFN ISSN 1097-4164
JRNL PMID 28306507
JRNL DOI 10.1016/J.MOLCEL.2017.02.008
REMARK 2
REMARK 2 RESOLUTION. 1.86 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK,
REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.61
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4
REMARK 3 NUMBER OF REFLECTIONS : 38270
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.171
REMARK 3 R VALUE (WORKING SET) : 0.169
REMARK 3 FREE R VALUE : 0.215
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080
REMARK 3 FREE R VALUE TEST SET COUNT : 1946
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 19
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.01
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2595
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2454
REMARK 3 BIN R VALUE (WORKING SET) : 0.2370
REMARK 3 BIN FREE R VALUE : 0.2890
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.43
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4020
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 62
REMARK 3 SOLVENT ATOMS : 347
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 27.86
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.09
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.13300
REMARK 3 B22 (A**2) : -2.90840
REMARK 3 B33 (A**2) : 3.04140
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -2.41420
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.000
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.155
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.140
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.150
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.139
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4253 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 5775 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1512 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 91 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 658 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4253 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 543 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 5411 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.98
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.58
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.43
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 15
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|305 - A|338 }
REMARK 3 ORIGIN FOR THE GROUP (A): -20.6936 21.0475 8.0787
REMARK 3 T TENSOR
REMARK 3 T11: -0.0491 T22: -0.1008
REMARK 3 T33: -0.1481 T12: 0.0658
REMARK 3 T13: 0.1035 T23: 0.0554
REMARK 3 L TENSOR
REMARK 3 L11: 1.1044 L22: 2.2791
REMARK 3 L33: 7.2007 L12: -0.6292
REMARK 3 L13: 1.1653 L23: 1.0887
REMARK 3 S TENSOR
REMARK 3 S11: -0.0632 S12: 0.0753 S13: -0.0328
REMARK 3 S21: 0.1371 S22: 0.0177 S23: 0.0941
REMARK 3 S31: 0.1056 S32: -0.0185 S33: 0.0456
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|339 - A|420 }
REMARK 3 ORIGIN FOR THE GROUP (A): -11.7293 19.0780 5.3413
REMARK 3 T TENSOR
REMARK 3 T11: -0.0470 T22: -0.0747
REMARK 3 T33: -0.1468 T12: 0.0327
REMARK 3 T13: 0.0674 T23: 0.0143
REMARK 3 L TENSOR
REMARK 3 L11: 2.5169 L22: 1.7529
REMARK 3 L33: 4.3394 L12: -0.7795
REMARK 3 L13: -0.6953 L23: 0.8989
REMARK 3 S TENSOR
REMARK 3 S11: -0.1659 S12: -0.3250 S13: -0.0494
REMARK 3 S21: 0.0895 S22: 0.1172 S23: -0.0360
REMARK 3 S31: -0.0454 S32: 0.3105 S33: 0.0488
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { A|421 - A|465 }
REMARK 3 ORIGIN FOR THE GROUP (A): -15.0337 23.7929 -4.0088
REMARK 3 T TENSOR
REMARK 3 T11: 0.0014 T22: -0.1082
REMARK 3 T33: -0.1036 T12: 0.0231
REMARK 3 T13: 0.0753 T23: -0.0015
REMARK 3 L TENSOR
REMARK 3 L11: 3.1474 L22: 1.1587
REMARK 3 L33: 4.3972 L12: -0.8703
REMARK 3 L13: -0.2435 L23: 0.1309
REMARK 3 S TENSOR
REMARK 3 S11: 0.0011 S12: -0.0376 S13: 0.2112
REMARK 3 S21: -0.2328 S22: 0.0240 S23: -0.0272
REMARK 3 S31: -0.3744 S32: -0.0874 S33: -0.0250
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { A|466 - A|525 }
REMARK 3 ORIGIN FOR THE GROUP (A): -20.6761 20.5000 -10.6196
REMARK 3 T TENSOR
REMARK 3 T11: -0.0461 T22: -0.0499
REMARK 3 T33: -0.0980 T12: 0.0216
REMARK 3 T13: 0.0789 T23: -0.0109
REMARK 3 L TENSOR
REMARK 3 L11: 2.0924 L22: 0.7892
REMARK 3 L33: 3.2076 L12: -0.1675
REMARK 3 L13: -0.1959 L23: -0.3319
REMARK 3 S TENSOR
REMARK 3 S11: -0.0771 S12: 0.1416 S13: -0.0766
REMARK 3 S21: -0.0068 S22: 0.0792 S23: 0.1332
REMARK 3 S31: -0.0675 S32: -0.4857 S33: -0.0021
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: { A|526 - A|553 }
REMARK 3 ORIGIN FOR THE GROUP (A): 0.2818 9.7705 4.1102
REMARK 3 T TENSOR
REMARK 3 T11: 0.0193 T22: 0.0261
REMARK 3 T33: -0.0535 T12: 0.1229
REMARK 3 T13: 0.0568 T23: 0.0828
REMARK 3 L TENSOR
REMARK 3 L11: 4.7162 L22: 1.8766
REMARK 3 L33: -1.2046 L12: -0.5918
REMARK 3 L13: -0.6549 L23: -3.3313
REMARK 3 S TENSOR
REMARK 3 S11: -0.1757 S12: -0.2784 S13: -0.1159
REMARK 3 S21: 0.1712 S22: 0.0985 S23: -0.1387
REMARK 3 S31: 0.2550 S32: 0.1828 S33: 0.0773
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: { B|303 - B|322 }
REMARK 3 ORIGIN FOR THE GROUP (A): -14.4986 34.9155 -31.4898
REMARK 3 T TENSOR
REMARK 3 T11: -0.0575 T22: 0.1747
REMARK 3 T33: -0.0600 T12: 0.1153
REMARK 3 T13: 0.0701 T23: 0.1235
REMARK 3 L TENSOR
REMARK 3 L11: -0.7392 L22: 2.6642
REMARK 3 L33: 2.5511 L12: -2.3381
REMARK 3 L13: 1.7230 L23: 0.0409
REMARK 3 S TENSOR
REMARK 3 S11: -0.0973 S12: 0.1370 S13: 0.4148
REMARK 3 S21: -0.0492 S22: 0.0486 S23: -0.0083
REMARK 3 S31: -0.0110 S32: 0.0137 S33: 0.0487
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: { B|323 - B|338 }
REMARK 3 ORIGIN FOR THE GROUP (A): 4.7859 8.4247 -33.2622
REMARK 3 T TENSOR
REMARK 3 T11: 0.0329 T22: -0.0017
REMARK 3 T33: -0.0496 T12: 0.0112
REMARK 3 T13: 0.0900 T23: -0.0263
REMARK 3 L TENSOR
REMARK 3 L11: 0.3110 L22: 3.0505
REMARK 3 L33: 0.6763 L12: -1.2226
REMARK 3 L13: -0.2764 L23: 1.0425
REMARK 3 S TENSOR
REMARK 3 S11: -0.0500 S12: 0.3702 S13: -0.2841
REMARK 3 S21: 0.1466 S22: 0.0550 S23: -0.1024
REMARK 3 S31: 0.4764 S32: -0.2709 S33: -0.0050
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: { B|339 - B|394 }
REMARK 3 ORIGIN FOR THE GROUP (A): 0.4361 23.0402 -24.7521
REMARK 3 T TENSOR
REMARK 3 T11: -0.0479 T22: -0.0497
REMARK 3 T33: -0.0652 T12: 0.0011
REMARK 3 T13: 0.0306 T23: 0.0094
REMARK 3 L TENSOR
REMARK 3 L11: 3.4216 L22: 1.6945
REMARK 3 L33: 2.5141 L12: -0.6288
REMARK 3 L13: -0.8899 L23: 0.7304
REMARK 3 S TENSOR
REMARK 3 S11: -0.0321 S12: 0.1521 S13: 0.2724
REMARK 3 S21: -0.0927 S22: 0.0265 S23: -0.1677
REMARK 3 S31: -0.1685 S32: 0.0534 S33: 0.0055
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: { B|395 - B|407 }
REMARK 3 ORIGIN FOR THE GROUP (A): -6.0266 6.2794 -30.4181
REMARK 3 T TENSOR
REMARK 3 T11: 0.0510 T22: -0.0072
REMARK 3 T33: -0.0058 T12: -0.1148
REMARK 3 T13: 0.1467 T23: -0.1228
REMARK 3 L TENSOR
REMARK 3 L11: 0.1578 L22: 0.2033
REMARK 3 L33: 3.4191 L12: -2.6727
REMARK 3 L13: 2.4426 L23: 2.0892
REMARK 3 S TENSOR
REMARK 3 S11: -0.0187 S12: 0.1273 S13: -0.1653
REMARK 3 S21: -0.1278 S22: -0.0326 S23: 0.0883
REMARK 3 S31: 0.1774 S32: -0.0570 S33: 0.0513
REMARK 3
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: { B|408 - B|437 }
REMARK 3 ORIGIN FOR THE GROUP (A): -4.7986 4.5559 -20.7908
REMARK 3 T TENSOR
REMARK 3 T11: 0.1143 T22: -0.1624
REMARK 3 T33: 0.0445 T12: -0.0247
REMARK 3 T13: 0.1738 T23: -0.0226
REMARK 3 L TENSOR
REMARK 3 L11: 3.3115 L22: 2.4377
REMARK 3 L33: 3.5940 L12: 0.9621
REMARK 3 L13: 1.1798 L23: 0.4612
REMARK 3 S TENSOR
REMARK 3 S11: -0.0427 S12: 0.0361 S13: -0.5168
REMARK 3 S21: -0.0601 S22: -0.0424 S23: -0.0528
REMARK 3 S31: 0.4991 S32: -0.1204 S33: 0.0851
REMARK 3
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: { B|438 - B|472 }
REMARK 3 ORIGIN FOR THE GROUP (A): -12.5827 23.6786 -22.7115
REMARK 3 T TENSOR
REMARK 3 T11: -0.0690 T22: -0.0105
REMARK 3 T33: -0.0907 T12: 0.0469
REMARK 3 T13: 0.0490 T23: 0.0138
REMARK 3 L TENSOR
REMARK 3 L11: 6.3188 L22: 3.7491
REMARK 3 L33: 4.0814 L12: 0.6196
REMARK 3 L13: -0.6525 L23: 0.6115
REMARK 3 S TENSOR
REMARK 3 S11: 0.0837 S12: 0.3876 S13: 0.0171
REMARK 3 S21: 0.0393 S22: -0.0023 S23: 0.0476
REMARK 3 S31: -0.1789 S32: -0.4060 S33: -0.0814
REMARK 3
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: { B|473 - B|496 }
REMARK 3 ORIGIN FOR THE GROUP (A): -20.3026 30.3392 -23.4653
REMARK 3 T TENSOR
REMARK 3 T11: -0.0683 T22: 0.0784
REMARK 3 T33: -0.1425 T12: 0.1241
REMARK 3 T13: 0.0398 T23: 0.0566
REMARK 3 L TENSOR
REMARK 3 L11: 3.5369 L22: 4.6994
REMARK 3 L33: 3.1608 L12: -2.4245
REMARK 3 L13: -1.5675 L23: 0.3859
REMARK 3 S TENSOR
REMARK 3 S11: 0.2530 S12: 0.6005 S13: 0.2639
REMARK 3 S21: -0.1669 S22: -0.1771 S23: -0.2119
REMARK 3 S31: -0.4591 S32: -0.3519 S33: -0.0759
REMARK 3
REMARK 3 TLS GROUP : 13
REMARK 3 SELECTION: { B|497 - B|553 }
REMARK 3 ORIGIN FOR THE GROUP (A): -2.3409 18.0147 -15.2332
REMARK 3 T TENSOR
REMARK 3 T11: -0.0158 T22: -0.0743
REMARK 3 T33: -0.0661 T12: 0.0226
REMARK 3 T13: 0.0496 T23: 0.0097
REMARK 3 L TENSOR
REMARK 3 L11: 4.9296 L22: 1.0645
REMARK 3 L33: 1.7551 L12: -0.7665
REMARK 3 L13: -1.2893 L23: 0.3111
REMARK 3 S TENSOR
REMARK 3 S11: -0.2851 S12: -0.0793 S13: 0.0218
REMARK 3 S21: 0.0987 S22: 0.1074 S23: -0.1341
REMARK 3 S31: 0.0916 S32: 0.1352 S33: 0.1777
REMARK 3
REMARK 3 TLS GROUP : 14
REMARK 3 SELECTION: { C|687 - C|697 }
REMARK 3 ORIGIN FOR THE GROUP (A): -15.8335 0.8174 7.9942
REMARK 3 T TENSOR
REMARK 3 T11: 0.1587 T22: -0.2228
REMARK 3 T33: -0.0836 T12: 0.0848
REMARK 3 T13: 0.2627 T23: 0.1955
REMARK 3 L TENSOR
REMARK 3 L11: -0.2847 L22: 1.5606
REMARK 3 L33: 0.2847 L12: 0.2277
REMARK 3 L13: 0.3146 L23: -3.0225
REMARK 3 S TENSOR
REMARK 3 S11: 0.0237 S12: -0.0579 S13: -0.1720
REMARK 3 S21: 0.0483 S22: -0.0045 S23: 0.0028
REMARK 3 S31: 0.1490 S32: -0.0625 S33: -0.0192
REMARK 3
REMARK 3 TLS GROUP : 15
REMARK 3 SELECTION: { D|687 - D|696 }
REMARK 3 ORIGIN FOR THE GROUP (A): 9.4463 33.5754 -24.8332
REMARK 3 T TENSOR
REMARK 3 T11: -0.0790 T22: -0.0295
REMARK 3 T33: 0.0616 T12: -0.0350
REMARK 3 T13: 0.1015 T23: 0.0819
REMARK 3 L TENSOR
REMARK 3 L11: 1.5277 L22: 2.4531
REMARK 3 L33: 0.1756 L12: 1.2336
REMARK 3 L13: -0.8810 L23: -0.7485
REMARK 3 S TENSOR
REMARK 3 S11: 0.0032 S12: 0.0230 S13: 0.1204
REMARK 3 S21: 0.0195 S22: 0.0018 S23: -0.0845
REMARK 3 S31: -0.1082 S32: 0.0346 S33: -0.0050
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5U2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-16.
REMARK 100 THE DEPOSITION ID IS D_1000225190.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-APR-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X12C
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.075
REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) CRYSTAL
REMARK 200 MONOCHROMATOR
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO
REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55884
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650
REMARK 200 RESOLUTION RANGE LOW (A) : 26.610
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2
REMARK 200 DATA REDUNDANCY : 3.300
REMARK 200 R MERGE (I) : 0.08200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68
REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7
REMARK 200 DATA REDUNDANCY IN SHELL : 1.90
REMARK 200 R MERGE FOR SHELL (I) : 0.76000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 37.31
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M
REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 294K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.68000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 21180 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ILE A 298
REMARK 465 LYS A 299
REMARK 465 ARG A 300
REMARK 465 SER A 301
REMARK 465 LYS A 302
REMARK 465 LYS A 303
REMARK 465 ASN A 304
REMARK 465 LEU A 462
REMARK 465 SER A 463
REMARK 465 SER A 464
REMARK 465 SER A 554
REMARK 465 ILE B 298
REMARK 465 LYS B 299
REMARK 465 ARG B 300
REMARK 465 SER B 301
REMARK 465 LYS B 302
REMARK 465 THR B 460
REMARK 465 PHE B 461
REMARK 465 LEU B 462
REMARK 465 SER B 463
REMARK 465 SER B 464
REMARK 465 THR B 465
REMARK 465 LEU B 466
REMARK 465 LYS B 467
REMARK 465 SER B 468
REMARK 465 LEU B 469
REMARK 465 GLU B 470
REMARK 465 GLU B 471
REMARK 465 SER B 554
REMARK 465 SER C 698
REMARK 465 SER D 697
REMARK 465 SER D 698
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 397 CG CD OE1 OE2
REMARK 470 LYS A 467 CG CD CE NZ
REMARK 470 GLU A 470 CG CD OE1 OE2
REMARK 470 LYS A 472 CG CD CE NZ
REMARK 470 LYS A 529 CG CD CE NZ
REMARK 470 ASN A 532 CG OD1 ND2
REMARK 470 LYS B 303 CG CD CE NZ
REMARK 470 LYS B 472 CG CD CE NZ
REMARK 470 LYS B 529 CG CD CE NZ
REMARK 470 LYS C 686 CG CD CE NZ
REMARK 470 LYS D 686 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 CYS B 530 N - CA - CB ANGL. DEV. = 10.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP B 332 -71.56 -42.41
REMARK 500 ARG B 335 73.72 52.00
REMARK 500 PHE B 337 26.85 -145.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 866 DISTANCE = 6.38 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OBH A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OBH B 601
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5U2B RELATED DB: PDB
DBREF 5U2D A 298 554 UNP P03372 ESR1_HUMAN 125 381
DBREF 5U2D B 298 554 UNP P03372 ESR1_HUMAN 125 381
DBREF 5U2D C 686 698 UNP Q15596 NCOA2_HUMAN 686 698
DBREF 5U2D D 686 698 UNP Q15596 NCOA2_HUMAN 686 698
SEQADV 5U2D SER A 537 UNP P03372 TYR 364 ENGINEERED MUTATION
SEQADV 5U2D SER B 537 UNP P03372 TYR 364 ENGINEERED MUTATION
SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU
SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU
SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO
SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU
SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS
SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN
SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET
SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS
SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN
SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET
SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU
SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU
SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU
SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU
SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS
SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA
SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER
SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS
SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU
SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER
SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU
SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU
SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO
SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU
SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS
SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN
SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET
SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS
SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN
SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET
SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU
SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU
SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU
SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU
SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS
SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA
SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER
SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS
SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU
SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER
SEQRES 1 C 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER
SEQRES 1 D 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER
HET OBH A 601 31
HET OBH B 601 31
HETNAM OBH CYCLOHEXA-2,5-DIEN-1-YL (1S,2R,4S)-5,6-BIS(4-
HETNAM 2 OBH HYDROXYPHENYL)-7-OXABICYCLO[2.2.1]HEPT-5-ENE-2-
HETNAM 3 OBH SULFONATE
FORMUL 5 OBH 2(C24 H22 O6 S)
FORMUL 7 HOH *347(H2 O)
HELIX 1 AA1 SER A 305 LEU A 310 1 6
HELIX 2 AA2 THR A 311 ALA A 322 1 12
HELIX 3 AA3 SER A 338 LYS A 362 1 25
HELIX 4 AA4 GLY A 366 LEU A 370 5 5
HELIX 5 AA5 THR A 371 MET A 396 1 26
HELIX 6 AA6 ASN A 413 VAL A 418 5 6
HELIX 7 AA7 GLY A 420 MET A 438 1 19
HELIX 8 AA8 GLN A 441 SER A 456 1 16
HELIX 9 AA9 LEU A 466 ALA A 493 1 28
HELIX 10 AB1 THR A 496 TYR A 526 1 31
HELIX 11 AB2 SER A 527 VAL A 533 1 7
HELIX 12 AB3 SER A 537 LEU A 549 1 13
HELIX 13 AB4 SER B 305 LEU B 310 1 6
HELIX 14 AB5 THR B 311 GLU B 323 1 13
HELIX 15 AB6 SER B 338 ARG B 363 1 26
HELIX 16 AB7 GLY B 366 LEU B 370 5 5
HELIX 17 AB8 THR B 371 SER B 395 1 25
HELIX 18 AB9 ASP B 411 LYS B 416 1 6
HELIX 19 AC1 GLY B 420 MET B 438 1 19
HELIX 20 AC2 GLN B 441 SER B 456 1 16
HELIX 21 AC3 ASP B 473 ALA B 493 1 21
HELIX 22 AC4 THR B 496 TYR B 526 1 31
HELIX 23 AC5 SER B 527 ASN B 532 1 6
HELIX 24 AC6 SER B 537 LEU B 549 1 13
HELIX 25 AC7 LYS C 688 ASP C 696 1 9
HELIX 26 AC8 LYS D 688 GLN D 695 1 8
SHEET 1 AA1 2 LYS A 401 ALA A 405 0
SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402
SHEET 1 AA2 2 LEU B 402 ALA B 405 0
SHEET 2 AA2 2 LEU B 408 LEU B 410 -1 O LEU B 410 N LEU B 402
SITE 1 AC1 18 LEU A 346 THR A 347 ALA A 350 GLU A 353
SITE 2 AC1 18 LEU A 387 MET A 388 ARG A 394 PHE A 404
SITE 3 AC1 18 GLU A 419 GLY A 420 MET A 421 ILE A 424
SITE 4 AC1 18 GLY A 521 HIS A 524 LEU A 525 LEU A 540
SITE 5 AC1 18 HOH A 707 HOH A 776
SITE 1 AC2 17 THR B 347 ALA B 350 GLU B 353 LEU B 387
SITE 2 AC2 17 MET B 388 ARG B 394 PHE B 404 VAL B 418
SITE 3 AC2 17 GLU B 419 GLY B 420 MET B 421 ILE B 424
SITE 4 AC2 17 GLY B 521 HIS B 524 LEU B 525 LEU B 540
SITE 5 AC2 17 HOH B 712
CRYST1 54.700 81.360 58.360 90.00 111.07 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018282 0.000000 0.007043 0.00000
SCALE2 0.000000 0.012291 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018363 0.00000