HEADER IMMUNE SYSTEM/VIRAL PROTEIN 02-DEC-16 5U3L TITLE CRYSTAL STRUCTURE OF DH511.2 FAB IN COMPLEX WITH HIV-1 GP41 MPER 670- TITLE 2 683 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH511.2 FAB HEAVY CHAIN; COMPND 3 CHAIN: H, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH511.2 FAB LIGHT CHAIN; COMPND 7 CHAIN: L, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GP41 MPER PEPTIDE; COMPND 11 CHAIN: P, C; COMPND 12 FRAGMENT: GP41 656-683; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: IGG HEAVY CHAIN; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: IGG LIGHT CHAIN; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 OTHER_DETAILS: GP41 MPER 670-683 PEPTIDE KEYWDS HIV-1, NEUTRALIZING, ANTIBODY, GP41, MPER, IMMUNE SYSTEM-VIRAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.OFEK,L.WU,C.S.LOUGHEED,L.D.WILLIAMS,N.I.NICELY,B.F.HAYNES REVDAT 5 04-OCT-23 5U3L 1 REMARK REVDAT 4 11-DEC-19 5U3L 1 REMARK REVDAT 3 23-AUG-17 5U3L 1 JRNL REMARK REVDAT 2 05-JUL-17 5U3L 1 JRNL REVDAT 1 15-FEB-17 5U3L 0 JRNL AUTH L.D.WILLIAMS,G.OFEK,S.SCHATZLE,J.R.MCDANIEL,X.LU,N.I.NICELY, JRNL AUTH 2 L.WU,C.S.LOUGHEED,T.BRADLEY,M.K.LOUDER,K.MCKEE,R.T.BAILER, JRNL AUTH 3 S.O'DELL,I.S.GEORGIEV,M.S.SEAMAN,R.J.PARKS,D.J.MARSHALL, JRNL AUTH 4 K.ANASTI,G.YANG,X.NIE,N.L.TUMBA,K.WIEHE,K.WAGH,B.KORBER, JRNL AUTH 5 T.B.KEPLER,S.MUNIR ALAM,L.MORRIS,G.KAMANGA,M.S.COHEN, JRNL AUTH 6 M.BONSIGNORI,S.M.XIA,D.C.MONTEFIORI,G.KELSOE,F.GAO, JRNL AUTH 7 J.R.MASCOLA,M.A.MOODY,K.O.SAUNDERS,H.X.LIAO,G.D.TOMARAS, JRNL AUTH 8 G.GEORGIOU,B.F.HAYNES JRNL TITL POTENT AND BROAD HIV-NEUTRALIZING ANTIBODIES IN MEMORY B JRNL TITL 2 CELLS AND PLASMA. JRNL REF SCI IMMUNOL V. 2 2017 JRNL REFN ESSN 2470-9468 JRNL PMID 28783671 JRNL DOI 10.1126/SCIIMMUNOL.AAL2200 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 50955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5183 - 5.7726 1.00 2776 154 0.2080 0.2303 REMARK 3 2 5.7726 - 4.5836 1.00 2712 166 0.1630 0.1978 REMARK 3 3 4.5836 - 4.0047 1.00 2725 139 0.1584 0.1897 REMARK 3 4 4.0047 - 3.6388 1.00 2718 141 0.1888 0.2015 REMARK 3 5 3.6388 - 3.3781 1.00 2723 128 0.1988 0.2208 REMARK 3 6 3.3781 - 3.1790 1.00 2669 142 0.2106 0.2377 REMARK 3 7 3.1790 - 3.0198 1.00 2687 157 0.2252 0.2329 REMARK 3 8 3.0198 - 2.8884 1.00 2706 128 0.2260 0.2535 REMARK 3 9 2.8884 - 2.7772 1.00 2696 146 0.2351 0.2893 REMARK 3 10 2.7772 - 2.6814 0.99 2638 141 0.2382 0.2304 REMARK 3 11 2.6814 - 2.5976 0.98 2626 170 0.2370 0.2623 REMARK 3 12 2.5976 - 2.5233 0.97 2598 136 0.2403 0.3013 REMARK 3 13 2.5233 - 2.4569 0.95 2572 130 0.2363 0.2658 REMARK 3 14 2.4569 - 2.3970 0.95 2563 135 0.2415 0.2727 REMARK 3 15 2.3970 - 2.3425 0.95 2559 143 0.2559 0.2750 REMARK 3 16 2.3425 - 2.2926 0.94 2464 149 0.2467 0.2782 REMARK 3 17 2.2926 - 2.2468 0.88 2378 138 0.2622 0.3215 REMARK 3 18 2.2468 - 2.2044 0.76 2037 103 0.2728 0.2771 REMARK 3 19 2.2044 - 2.1650 0.56 1497 65 0.2720 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7178 REMARK 3 ANGLE : 0.554 9769 REMARK 3 CHIRALITY : 0.044 1080 REMARK 3 PLANARITY : 0.003 1239 REMARK 3 DIHEDRAL : 10.497 4213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2434 16.6801 42.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.5617 REMARK 3 T33: 0.2826 T12: -0.0609 REMARK 3 T13: -0.0340 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.1702 L22: 1.7036 REMARK 3 L33: 1.8838 L12: 0.6498 REMARK 3 L13: 0.2820 L23: -0.3850 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: 0.4751 S13: 0.2121 REMARK 3 S21: -0.0764 S22: 0.0176 S23: -0.0592 REMARK 3 S31: -0.2794 S32: 0.0340 S33: 0.1357 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8479 10.5755 36.2284 REMARK 3 T TENSOR REMARK 3 T11: 0.3797 T22: 0.9880 REMARK 3 T33: 0.5837 T12: 0.0280 REMARK 3 T13: -0.0088 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 4.4266 L22: 5.0398 REMARK 3 L33: 1.3480 L12: -2.0748 REMARK 3 L13: -0.1212 L23: -0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 1.1282 S13: -0.0567 REMARK 3 S21: -0.3018 S22: 0.0183 S23: 0.0045 REMARK 3 S31: 0.1809 S32: 0.6268 S33: -0.0990 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0624 -1.8783 56.9784 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.5191 REMARK 3 T33: 0.4551 T12: -0.0952 REMARK 3 T13: -0.0520 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 5.8942 L22: 4.6257 REMARK 3 L33: 8.5517 L12: -2.1573 REMARK 3 L13: -1.9787 L23: 6.1036 REMARK 3 S TENSOR REMARK 3 S11: 0.3420 S12: -0.3362 S13: -0.3113 REMARK 3 S21: 0.0248 S22: -0.1470 S23: -0.5317 REMARK 3 S31: 0.2484 S32: -0.2077 S33: -0.2087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5640 0.1198 51.7011 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.5167 REMARK 3 T33: 0.3793 T12: -0.0607 REMARK 3 T13: -0.0157 T23: 0.0739 REMARK 3 L TENSOR REMARK 3 L11: 4.8469 L22: 2.7072 REMARK 3 L33: 2.6978 L12: -0.6117 REMARK 3 L13: 0.6220 L23: -0.7668 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: -0.2192 S13: -0.5230 REMARK 3 S21: 0.0423 S22: -0.0210 S23: 0.0011 REMARK 3 S31: 0.3886 S32: -0.2294 S33: -0.0570 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9419 0.7553 53.7466 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.5614 REMARK 3 T33: 0.3590 T12: -0.1017 REMARK 3 T13: 0.0065 T23: 0.1073 REMARK 3 L TENSOR REMARK 3 L11: 4.3859 L22: 3.9468 REMARK 3 L33: 2.0513 L12: -1.2011 REMARK 3 L13: 0.4848 L23: 0.2089 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: -0.1577 S13: -0.5237 REMARK 3 S21: 0.1861 S22: 0.0906 S23: 0.0390 REMARK 3 S31: 0.0755 S32: -0.2872 S33: -0.0500 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 103 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6787 -8.0928 51.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.4494 T22: 0.5059 REMARK 3 T33: 0.7589 T12: 0.0256 REMARK 3 T13: -0.2002 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 4.6817 L22: 5.1497 REMARK 3 L33: 2.6522 L12: -4.8309 REMARK 3 L13: 1.1075 L23: -0.6756 REMARK 3 S TENSOR REMARK 3 S11: -0.2829 S12: 0.1454 S13: -0.9691 REMARK 3 S21: 0.1336 S22: -0.0434 S23: 0.5963 REMARK 3 S31: -0.2597 S32: 0.0468 S33: 0.3148 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8879 12.7404 43.3539 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 1.0228 REMARK 3 T33: 0.6956 T12: 0.0157 REMARK 3 T13: 0.0046 T23: 0.2045 REMARK 3 L TENSOR REMARK 3 L11: 6.8279 L22: 1.7969 REMARK 3 L33: 3.0178 L12: 3.4922 REMARK 3 L13: 0.7207 L23: 0.3527 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 1.5989 S13: 0.3588 REMARK 3 S21: -0.4545 S22: 0.0439 S23: -0.0293 REMARK 3 S31: -0.0112 S32: 0.5936 S33: 0.0112 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 129 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6351 4.6560 52.5876 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.6828 REMARK 3 T33: 0.5044 T12: 0.0956 REMARK 3 T13: -0.0221 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 6.9949 L22: 8.1076 REMARK 3 L33: 1.3866 L12: 4.8957 REMARK 3 L13: 1.2957 L23: 1.0085 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: 0.4047 S13: 0.2401 REMARK 3 S21: 0.2927 S22: -0.0976 S23: 0.5229 REMARK 3 S31: 0.0449 S32: 0.1090 S33: -0.2093 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6814 5.3295 50.7371 REMARK 3 T TENSOR REMARK 3 T11: 0.4664 T22: 0.6880 REMARK 3 T33: 0.4627 T12: 0.1505 REMARK 3 T13: 0.0726 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 9.8177 L22: 5.4991 REMARK 3 L33: 2.6013 L12: 3.0639 REMARK 3 L13: 4.0560 L23: 1.5668 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 1.0114 S13: -0.0879 REMARK 3 S21: 0.0351 S22: 0.2874 S23: 0.5904 REMARK 3 S31: 0.0331 S32: 0.4689 S33: -0.0786 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 173 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8715 14.8537 50.2426 REMARK 3 T TENSOR REMARK 3 T11: 0.3789 T22: 0.7237 REMARK 3 T33: 0.7227 T12: 0.0211 REMARK 3 T13: -0.0476 T23: 0.1193 REMARK 3 L TENSOR REMARK 3 L11: 5.7721 L22: 5.6298 REMARK 3 L33: 2.3942 L12: 5.4217 REMARK 3 L13: 0.8301 L23: 0.8771 REMARK 3 S TENSOR REMARK 3 S11: -0.4116 S12: 0.5828 S13: 0.9257 REMARK 3 S21: -0.0897 S22: 0.5293 S23: 0.8636 REMARK 3 S31: -0.2395 S32: 0.5458 S33: -0.0875 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 189 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2698 4.6080 56.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.5202 T22: 0.5878 REMARK 3 T33: 0.4257 T12: 0.0771 REMARK 3 T13: -0.0518 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 7.9497 L22: 3.8272 REMARK 3 L33: 3.2379 L12: 4.8411 REMARK 3 L13: 0.8652 L23: -1.1351 REMARK 3 S TENSOR REMARK 3 S11: 0.4504 S12: 0.1620 S13: -0.7661 REMARK 3 S21: 0.6162 S22: -0.4269 S23: -0.6719 REMARK 3 S31: 0.1365 S32: 0.6934 S33: -0.1219 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9824 38.8903 16.5143 REMARK 3 T TENSOR REMARK 3 T11: 0.2542 T22: 0.6615 REMARK 3 T33: 0.3213 T12: -0.0533 REMARK 3 T13: 0.0275 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.5643 L22: 1.9369 REMARK 3 L33: 5.8767 L12: 2.4884 REMARK 3 L13: 3.3272 L23: 2.3983 REMARK 3 S TENSOR REMARK 3 S11: -0.1303 S12: 0.1899 S13: -0.1142 REMARK 3 S21: 0.1140 S22: 0.4198 S23: -0.1801 REMARK 3 S31: -0.1376 S32: 1.2520 S33: -0.2532 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7859 35.8297 23.1448 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.3720 REMARK 3 T33: 0.3114 T12: -0.0304 REMARK 3 T13: -0.0152 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 2.1068 L22: 1.9542 REMARK 3 L33: 6.2323 L12: -0.2713 REMARK 3 L13: 0.8871 L23: 2.1830 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.0501 S13: -0.1779 REMARK 3 S21: 0.1078 S22: 0.0421 S23: 0.0105 REMARK 3 S31: 0.1901 S32: 0.3790 S33: -0.0166 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3762 45.9704 -9.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.5872 T22: 0.4928 REMARK 3 T33: 0.2635 T12: 0.1350 REMARK 3 T13: 0.0450 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 3.2710 L22: 4.4355 REMARK 3 L33: 2.1291 L12: -1.4141 REMARK 3 L13: -0.1588 L23: -0.1483 REMARK 3 S TENSOR REMARK 3 S11: 0.4429 S12: 0.7168 S13: 0.1391 REMARK 3 S21: -0.8581 S22: -0.4069 S23: 0.0581 REMARK 3 S31: -0.5026 S32: -0.4495 S33: -0.0270 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7196 49.5236 -15.8292 REMARK 3 T TENSOR REMARK 3 T11: 0.9467 T22: 0.7618 REMARK 3 T33: 0.4086 T12: 0.2450 REMARK 3 T13: 0.2153 T23: 0.0956 REMARK 3 L TENSOR REMARK 3 L11: 3.1264 L22: 7.6675 REMARK 3 L33: 4.9471 L12: -2.0294 REMARK 3 L13: 3.3908 L23: -5.1037 REMARK 3 S TENSOR REMARK 3 S11: 0.5127 S12: 0.6695 S13: 0.6032 REMARK 3 S21: -0.5681 S22: -0.3328 S23: -0.5099 REMARK 3 S31: -1.3557 S32: -0.0285 S33: 0.1075 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1053 48.1733 26.3739 REMARK 3 T TENSOR REMARK 3 T11: 0.3892 T22: 0.4101 REMARK 3 T33: 0.3023 T12: 0.0435 REMARK 3 T13: -0.0408 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 4.1797 L22: 2.6099 REMARK 3 L33: 7.2434 L12: -1.8020 REMARK 3 L13: 0.9486 L23: -0.2775 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: -0.2411 S13: 0.1133 REMARK 3 S21: 0.1711 S22: -0.1818 S23: 0.3704 REMARK 3 S31: -0.8821 S32: -0.7543 S33: 0.1995 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8603 57.9566 8.2931 REMARK 3 T TENSOR REMARK 3 T11: 0.5715 T22: 0.5489 REMARK 3 T33: 0.5107 T12: 0.2507 REMARK 3 T13: -0.0533 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 8.4845 L22: 5.2550 REMARK 3 L33: 8.3225 L12: -3.8692 REMARK 3 L13: 6.8066 L23: -6.2810 REMARK 3 S TENSOR REMARK 3 S11: -0.5149 S12: -0.9869 S13: -0.0589 REMARK 3 S21: 0.8423 S22: 0.5661 S23: -0.1643 REMARK 3 S31: 0.2824 S32: -0.2598 S33: 0.0494 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.3242 46.2125 -9.9155 REMARK 3 T TENSOR REMARK 3 T11: 0.7142 T22: 0.6822 REMARK 3 T33: 0.6177 T12: 0.2558 REMARK 3 T13: -0.3049 T23: -0.1055 REMARK 3 L TENSOR REMARK 3 L11: 1.3125 L22: 5.2377 REMARK 3 L33: 2.5977 L12: -0.6019 REMARK 3 L13: -0.1843 L23: 2.2387 REMARK 3 S TENSOR REMARK 3 S11: 0.5072 S12: 0.7097 S13: -0.7428 REMARK 3 S21: -0.8392 S22: -0.1711 S23: 0.7860 REMARK 3 S31: 0.2325 S32: 0.1775 S33: 0.4021 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4753 45.7130 -8.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.6462 T22: 0.5268 REMARK 3 T33: 0.7253 T12: 0.1147 REMARK 3 T13: -0.3108 T23: -0.1001 REMARK 3 L TENSOR REMARK 3 L11: 2.5439 L22: 3.1158 REMARK 3 L33: 2.6988 L12: -0.9732 REMARK 3 L13: -0.2195 L23: 1.3661 REMARK 3 S TENSOR REMARK 3 S11: 0.4182 S12: 0.6768 S13: -0.6489 REMARK 3 S21: -0.5024 S22: -0.3818 S23: 1.0737 REMARK 3 S31: 0.3135 S32: -0.0146 S33: -0.0015 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 668 THROUGH 685 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.4365 12.1277 49.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.7549 REMARK 3 T33: 0.3700 T12: 0.0075 REMARK 3 T13: -0.0067 T23: 0.1153 REMARK 3 L TENSOR REMARK 3 L11: 5.8126 L22: 2.8462 REMARK 3 L33: 4.1320 L12: -0.0704 REMARK 3 L13: -3.5592 L23: -0.9625 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.4069 S13: 0.1170 REMARK 3 S21: 0.0861 S22: 0.1400 S23: 0.4004 REMARK 3 S31: -1.1399 S32: 0.1822 S33: -0.3586 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 667 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0601 41.8635 37.7854 REMARK 3 T TENSOR REMARK 3 T11: 0.5055 T22: 0.6436 REMARK 3 T33: 0.5300 T12: -0.0720 REMARK 3 T13: -0.1125 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 8.2930 L22: 4.2527 REMARK 3 L33: 1.2826 L12: 0.8591 REMARK 3 L13: 3.1804 L23: 0.8344 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.6729 S13: -0.8807 REMARK 3 S21: 1.2623 S22: -0.1545 S23: -1.9729 REMARK 3 S31: -0.0780 S32: 0.5945 S33: 0.1284 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 672 THROUGH 685 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8606 37.6915 45.2082 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.5616 REMARK 3 T33: 0.3654 T12: -0.0563 REMARK 3 T13: -0.0822 T23: 0.1629 REMARK 3 L TENSOR REMARK 3 L11: 4.8017 L22: 3.8417 REMARK 3 L33: 9.7709 L12: 1.3725 REMARK 3 L13: -2.9197 L23: -0.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.0818 S13: -0.9790 REMARK 3 S21: -0.0140 S22: 0.0760 S23: 0.1387 REMARK 3 S31: 0.9036 S32: -0.2770 S33: -0.3246 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 42.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5U3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 10% PEG 400, 0.5 M NACL, REMARK 280 0.1 M C2H3NAO2 PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.03600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.03600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.82200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 129 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 SER H 188 REMARK 465 LEU H 189 REMARK 465 GLY H 190 REMARK 465 THR H 191 REMARK 465 GLN H 192 REMARK 465 THR H 193 REMARK 465 PRO A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 LYS A 129 REMARK 465 SER A 130 REMARK 465 THR A 131 REMARK 465 SER A 132 REMARK 465 GLN A 192 REMARK 465 GLY B 212 REMARK 465 LYS P 686 REMARK 465 LYS C 686 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LEU H 11 CG CD1 CD2 REMARK 470 SER H 132 OG REMARK 470 THR H 135 OG1 CG2 REMARK 470 LEU H 159 CG CD1 CD2 REMARK 470 VAL H 184 CG1 CG2 REMARK 470 ILE H 195 CG1 CG2 CD1 REMARK 470 ASN H 199 CG OD1 ND2 REMARK 470 LYS H 206 CG CD CE NZ REMARK 470 ARG H 210 CG CD NE CZ NH1 NH2 REMARK 470 VAL H 211 CG1 CG2 REMARK 470 GLU H 212 CG CD OE1 OE2 REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 1 CG OD1 OD2 REMARK 470 VAL B 15 CG1 CG2 REMARK 470 ASP B 122 CG OD1 OD2 REMARK 470 SER B 127 OG REMARK 470 VAL B 150 CG1 CG2 REMARK 470 ASN B 152 CG OD1 ND2 REMARK 470 LEU B 154 CG CD1 CD2 REMARK 470 LEU B 181 CG CD1 CD2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 VAL B 191 CG1 CG2 REMARK 470 PHE B 209 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS P 667 CG CD CE NZ REMARK 470 LYS P 668 CG CD CE NZ REMARK 470 LYS P 685 CG CD CE NZ REMARK 470 LYS C 667 CG CD CE NZ REMARK 470 LYS C 668 CG CD CE NZ REMARK 470 LYS C 684 CG CD CE NZ REMARK 470 LYS C 685 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 194 O HOH A 303 1.35 REMARK 500 HZ1 LYS A 83 O HOH A 307 1.37 REMARK 500 H GLU H 212 O HOH H 306 1.51 REMARK 500 HZ1 LYS A 209 OE1 GLU B 123 1.54 REMARK 500 O HOH H 351 O HOH H 359 1.84 REMARK 500 OE1 GLN B 124 O HOH B 301 1.97 REMARK 500 O SER A 161 O HOH A 301 2.02 REMARK 500 OG SER A 23 O HOH A 302 2.03 REMARK 500 O HOH H 302 O HOH H 318 2.03 REMARK 500 N SER H 130 O HOH H 301 2.04 REMARK 500 OE2 GLU L 90 O HOH L 301 2.06 REMARK 500 OD1 ASN H 76 O HOH H 302 2.10 REMARK 500 O HOH A 353 O HOH C 704 2.11 REMARK 500 OD1 ASP H 144 O HOH H 303 2.11 REMARK 500 N TYR A 194 O HOH A 303 2.12 REMARK 500 OE1 GLU H 46 O HOH H 304 2.14 REMARK 500 O ASP A 73 O HOH A 304 2.15 REMARK 500 OE1 GLN L 124 O HOH L 302 2.16 REMARK 500 O HOH B 336 O HOH B 337 2.19 REMARK 500 O PHE H 67 O HOH H 305 2.19 REMARK 500 OG SER A 7 O HOH A 305 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ PHE H 100C HE2 PHE H 100C 2456 1.21 REMARK 500 CE2 PHE H 100C CZ PHE H 100C 2456 1.29 REMARK 500 CE1 PHE H 100C HD2 PHE H 100C 2456 1.40 REMARK 500 CD2 PHE H 100C CZ PHE H 100C 2456 1.42 REMARK 500 CZ PHE H 100C HD2 PHE H 100C 2456 1.42 REMARK 500 HG SER L 9 OE2 GLU L 195 2556 1.57 REMARK 500 CD2 PHE H 100C CE1 PHE H 100C 2456 1.92 REMARK 500 OG SER L 9 OE2 GLU L 195 2556 1.99 REMARK 500 CE1 PHE H 100C CE2 PHE H 100C 2456 2.12 REMARK 500 CG PHE H 100C CE2 PHE H 100C 2456 2.12 REMARK 500 CG PHE H 100C CD2 PHE H 100C 2456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 65 -0.37 71.17 REMARK 500 ASP H 144 65.95 64.47 REMARK 500 ARG L 30 -127.24 53.92 REMARK 500 ALA L 51 -35.84 75.52 REMARK 500 ALA L 84 -175.39 -171.55 REMARK 500 ASN L 138 63.96 61.42 REMARK 500 ARG L 211 107.94 -55.53 REMARK 500 ASP A 65 -7.69 77.40 REMARK 500 ASP A 144 60.11 63.79 REMARK 500 ARG B 30 -120.32 49.90 REMARK 500 ALA B 51 -37.18 75.05 REMARK 500 SER B 52 -0.99 -141.14 REMARK 500 ASN B 91 52.68 -143.77 REMARK 500 ASN B 152 -4.85 77.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U3J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.1 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 662-683 PEPTIDE REMARK 900 RELATED ID: 5U3M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.11P FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.12P FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2_K3 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.4 FAB DBREF 5U3L H 1 213 PDB 5U3L 5U3L 1 213 DBREF 5U3L L 1 212 PDB 5U3L 5U3L 1 212 DBREF 5U3L A 1 213 PDB 5U3L 5U3L 1 213 DBREF 5U3L B 1 212 PDB 5U3L 5U3L 1 212 DBREF 5U3L P 667 686 PDB 5U3L 5U3L 667 686 DBREF 5U3L C 667 686 PDB 5U3L 5U3L 667 686 SEQRES 1 H 232 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 232 PRO GLY GLY SER LEU THR LEU SER CYS SER ALA SER GLY SEQRES 3 H 232 PHE PHE PHE ASP ASN SER TRP MET GLY TRP VAL ARG GLN SEQRES 4 H 232 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE ARG SEQRES 5 H 232 ARG LEU LYS ASP GLY ALA THR GLY GLU TYR GLY ALA ALA SEQRES 6 H 232 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER ARG SEQRES 7 H 232 ASN MET LEU TYR LEU HIS MET ARG THR LEU LYS THR GLU SEQRES 8 H 232 ASP SER GLY THR TYR TYR CYS THR MET ASP GLU GLY THR SEQRES 9 H 232 PRO VAL THR ARG PHE LEU GLU TRP GLY TYR PHE TYR TYR SEQRES 10 H 232 TYR MET ALA VAL TRP GLY ARG GLY THR THR VAL ILE VAL SEQRES 11 H 232 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 232 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 232 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 232 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 232 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 232 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 232 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 232 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASN ILE ARG ASP TYR LEU ASN TRP TYR GLN HIS LYS SEQRES 4 L 214 PRO GLY GLY SER PRO ARG LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 214 THR LEU GLN THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY ASN LEU PHE THR LEU THR ILE THR ASN LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLU ASN SEQRES 8 L 214 TYR ASN THR ILE PRO SER LEU SER PHE GLY GLN GLY THR SEQRES 9 L 214 LYS VAL ASP ILE ARG ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 214 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 214 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 214 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 214 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 214 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 214 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 214 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 214 LYS SER PHE ASN ARG GLY SEQRES 1 A 232 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL LYS SEQRES 2 A 232 PRO GLY GLY SER LEU THR LEU SER CYS SER ALA SER GLY SEQRES 3 A 232 PHE PHE PHE ASP ASN SER TRP MET GLY TRP VAL ARG GLN SEQRES 4 A 232 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE ARG SEQRES 5 A 232 ARG LEU LYS ASP GLY ALA THR GLY GLU TYR GLY ALA ALA SEQRES 6 A 232 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER ARG SEQRES 7 A 232 ASN MET LEU TYR LEU HIS MET ARG THR LEU LYS THR GLU SEQRES 8 A 232 ASP SER GLY THR TYR TYR CYS THR MET ASP GLU GLY THR SEQRES 9 A 232 PRO VAL THR ARG PHE LEU GLU TRP GLY TYR PHE TYR TYR SEQRES 10 A 232 TYR MET ALA VAL TRP GLY ARG GLY THR THR VAL ILE VAL SEQRES 11 A 232 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 A 232 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 A 232 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 A 232 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 A 232 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 A 232 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 A 232 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 A 232 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 1 B 214 ASP ILE VAL MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 B 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 214 GLN ASN ILE ARG ASP TYR LEU ASN TRP TYR GLN HIS LYS SEQRES 4 B 214 PRO GLY GLY SER PRO ARG LEU LEU ILE TYR ALA ALA SER SEQRES 5 B 214 THR LEU GLN THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY ASN LEU PHE THR LEU THR ILE THR ASN LEU SEQRES 7 B 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLU ASN SEQRES 8 B 214 TYR ASN THR ILE PRO SER LEU SER PHE GLY GLN GLY THR SEQRES 9 B 214 LYS VAL ASP ILE ARG ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 B 214 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 B 214 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 B 214 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 B 214 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 B 214 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 B 214 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 B 214 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 B 214 LYS SER PHE ASN ARG GLY SEQRES 1 P 20 LYS LYS LYS TRP ASN TRP PHE ASP ILE THR ASN TRP LEU SEQRES 2 P 20 TRP TYR ILE ARG LYS LYS LYS SEQRES 1 C 20 LYS LYS LYS TRP ASN TRP PHE ASP ILE THR ASN TRP LEU SEQRES 2 C 20 TRP TYR ILE ARG LYS LYS LYS FORMUL 7 HOH *213(H2 O) HELIX 1 AA1 PHE H 28 SER H 32 5 5 HELIX 2 AA2 ARG H 52A GLY H 54 5 5 HELIX 3 AA3 LYS H 83 SER H 87 5 5 HELIX 4 AA4 ARG H 100B TRP H 100F 5 5 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 HIS L 189 1 7 HELIX 9 AA9 PHE A 28 SER A 32 5 5 HELIX 10 AB1 ARG A 52A GLY A 54 5 5 HELIX 11 AB2 ASP A 73 ARG A 75 5 3 HELIX 12 AB3 LYS A 83 SER A 87 5 5 HELIX 13 AB4 ARG A 100B TRP A 100F 5 5 HELIX 14 AB5 SER A 156 ALA A 158 5 3 HELIX 15 AB6 SER A 187 LEU A 189 5 3 HELIX 16 AB7 LYS A 201 ASN A 204 5 4 HELIX 17 AB8 GLN B 79 PHE B 83 5 5 HELIX 18 AB9 SER B 121 LYS B 126 1 6 HELIX 19 AC1 LYS B 183 HIS B 189 1 7 HELIX 20 AC2 ASN P 671 LYS P 684 1 14 HELIX 21 AC3 ASN C 671 LYS C 685 1 15 SHEET 1 AA1 4 GLN H 3 GLY H 8 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 MET H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O HIS H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 108 N GLY H 10 SHEET 3 AA2 6 GLY H 88 PRO H 99 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 GLY H 57 TYR H 59 -1 O GLU H 58 N ARG H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 108 N GLY H 10 SHEET 3 AA3 4 GLY H 88 PRO H 99 -1 N GLY H 88 O VAL H 109 SHEET 4 AA3 4 PHE H 100I TRP H 103 -1 O VAL H 102 N MET H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 VAL H 184 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 VAL H 184 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 LEU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O ASP L 105 N VAL L 11 SHEET 3 AA8 6 THR L 85 GLU L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 HIS L 38 -1 N HIS L 38 O THR L 85 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 AA8 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB2 4 GLN A 3 SER A 7 0 SHEET 2 AB2 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 AB2 4 MET A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AB2 4 PHE A 67 ASP A 72 -1 N THR A 68 O HIS A 81 SHEET 1 AB3 6 GLY A 10 VAL A 12 0 SHEET 2 AB3 6 THR A 107 VAL A 111 1 O ILE A 110 N GLY A 10 SHEET 3 AB3 6 GLY A 88 PRO A 99 -1 N GLY A 88 O VAL A 109 SHEET 4 AB3 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 AB3 6 LEU A 45 ILE A 51 -1 O ILE A 51 N MET A 34 SHEET 6 AB3 6 GLY A 57 TYR A 59 -1 O GLU A 58 N ARG A 50 SHEET 1 AB4 4 GLY A 10 VAL A 12 0 SHEET 2 AB4 4 THR A 107 VAL A 111 1 O ILE A 110 N GLY A 10 SHEET 3 AB4 4 GLY A 88 PRO A 99 -1 N GLY A 88 O VAL A 109 SHEET 4 AB4 4 PHE A 100I TRP A 103 -1 O VAL A 102 N MET A 94 SHEET 1 AB5 4 SER A 120 LEU A 124 0 SHEET 2 AB5 4 THR A 135 TYR A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 AB5 4 TYR A 176 PRO A 185 -1 O LEU A 178 N VAL A 142 SHEET 4 AB5 4 VAL A 163 THR A 165 -1 N HIS A 164 O VAL A 181 SHEET 1 AB6 4 SER A 120 LEU A 124 0 SHEET 2 AB6 4 THR A 135 TYR A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 AB6 4 TYR A 176 PRO A 185 -1 O LEU A 178 N VAL A 142 SHEET 4 AB6 4 VAL A 169 LEU A 170 -1 N VAL A 169 O SER A 177 SHEET 1 AB7 3 THR A 151 TRP A 154 0 SHEET 2 AB7 3 TYR A 194 HIS A 200 -1 O ASN A 197 N SER A 153 SHEET 3 AB7 3 THR A 205 VAL A 211 -1 O THR A 205 N HIS A 200 SHEET 1 AB8 4 MET B 4 SER B 7 0 SHEET 2 AB8 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AB8 4 LEU B 70 ILE B 75 -1 O PHE B 71 N CYS B 23 SHEET 4 AB8 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AB9 6 SER B 10 ALA B 13 0 SHEET 2 AB9 6 THR B 102 ILE B 106 1 O ASP B 105 N VAL B 11 SHEET 3 AB9 6 THR B 85 GLU B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AB9 6 LEU B 33 HIS B 38 -1 N ASN B 34 O GLN B 89 SHEET 5 AB9 6 ARG B 45 TYR B 49 -1 O ARG B 45 N GLN B 37 SHEET 6 AB9 6 THR B 53 LEU B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AC1 4 SER B 114 PHE B 118 0 SHEET 2 AC1 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AC1 4 TYR B 173 SER B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AC1 4 SER B 159 VAL B 163 -1 N SER B 162 O SER B 176 SHEET 1 AC2 4 ALA B 153 LEU B 154 0 SHEET 2 AC2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AC2 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AC2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 3 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 4 CYS A 22 CYS A 92 1555 1555 2.05 SSBOND 5 CYS A 140 CYS A 196 1555 1555 2.03 SSBOND 6 CYS B 23 CYS B 88 1555 1555 2.05 SSBOND 7 CYS B 134 CYS B 194 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -5.21 CISPEP 2 GLU H 148 PRO H 149 0 -1.63 CISPEP 3 SER L 7 PRO L 8 0 -3.82 CISPEP 4 TYR L 140 PRO L 141 0 1.95 CISPEP 5 PHE A 146 PRO A 147 0 -6.93 CISPEP 6 GLU A 148 PRO A 149 0 -0.60 CISPEP 7 SER B 7 PRO B 8 0 -5.89 CISPEP 8 TYR B 140 PRO B 141 0 0.36 CRYST1 110.072 75.644 123.427 90.00 94.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009085 0.000000 0.000652 0.00000 SCALE2 0.000000 0.013220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008123 0.00000