HEADER TRANSCRIPTION 05-DEC-16 5U4K TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN THE KIX DOMAIN OF CBP AND THE TITLE 2 TRANSACTIVATION DOMAIN 1 OF P65 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KIX DOMAIN (UNP RESIDUES 25-111); COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: KIX DOMAIN: RESIDUES 586-672.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSCRIPTION FACTOR P65; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: TRANSACTIVATION DOMAIN 1 (UNP RESIDUES 521-551); COMPND 11 SYNONYM: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT,NUCLEAR FACTOR OF COMPND 12 KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 3; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: P65 TRANSACTIVATION DOMAIN 1, RESIDUES 532-551. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CREBBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RELA, NFKB3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, P300-CBP COACTIVATOR FAMILY, NF-KB, TRANSACTIVATION KEYWDS 2 DOMAIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.LECOQ,L.RAIOLA,P.R.CHABOT,N.CYR,G.ARSENEAULT,J.G.OMICHINSKI REVDAT 6 14-JUN-23 5U4K 1 REMARK REVDAT 5 08-FEB-23 5U4K 1 REMARK REVDAT 4 01-FEB-23 5U4K 1 SPRSDE REVDAT 3 31-MAY-17 5U4K 1 JRNL REVDAT 2 05-APR-17 5U4K 1 JRNL REVDAT 1 08-MAR-17 5U4K 0 JRNL AUTH L.LECOQ,L.RAIOLA,P.R.CHABOT,N.CYR,G.ARSENEAULT,P.LEGAULT, JRNL AUTH 2 J.G.OMICHINSKI JRNL TITL STRUCTURAL CHARACTERIZATION OF INTERACTIONS BETWEEN JRNL TITL 2 TRANSACTIVATION DOMAIN 1 OF THE P65 SUBUNIT OF NF-KAPPA B JRNL TITL 3 AND TRANSCRIPTION REGULATORY FACTORS. JRNL REF NUCLEIC ACIDS RES. V. 45 5564 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28334776 JRNL DOI 10.1093/NAR/GKX146 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225319. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 P65 TA1, 2.4 MM KIX DOMAIN, 90% REMARK 210 H2O/10% D2O; 0.8 MM [U-99% 13C; REMARK 210 U-99% 15N] P65 TA1, 2.4 MM CBP- REMARK 210 KIX, 100% D2O; 0.8 MM [U-99% 13C; REMARK 210 U-99% 15N] CBP-KIX, 2.4 MM P65 REMARK 210 TA1, 90% H2O/10% D2O; 0.8 MM [U- REMARK 210 99% 13C; U-99% 15N] CBP-KIX, 2.4 REMARK 210 MM P65 TA1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D H(CCO) REMARK 210 NH; 2D 1H-13C HSQC; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D-INTERMOLECULAR- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITYINOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, ANALYSIS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 260 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 592 OE2 GLU A 593 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER B 520 119.27 62.05 REMARK 500 1 TYR B 523 87.08 59.42 REMARK 500 1 LEU B 528 -12.76 61.46 REMARK 500 2 SER B 529 88.36 -151.24 REMARK 500 3 ASN B 525 123.89 59.07 REMARK 500 3 SER B 529 -46.94 -136.51 REMARK 500 4 ARG A 671 -5.22 69.46 REMARK 500 4 TYR B 523 118.78 60.43 REMARK 500 5 SER B 520 94.88 57.40 REMARK 500 5 ASN B 525 -79.55 63.95 REMARK 500 5 SER B 529 99.36 -161.20 REMARK 500 6 ARG A 671 -81.39 -117.63 REMARK 500 6 TYR B 523 93.13 56.76 REMARK 500 6 ASN B 525 -41.14 -146.63 REMARK 500 7 LEU B 527 -164.99 -129.74 REMARK 500 7 LEU B 528 -18.93 66.56 REMARK 500 8 ARG A 671 -75.79 -112.16 REMARK 500 8 ASN B 525 120.90 64.38 REMARK 500 8 SER B 529 94.46 63.31 REMARK 500 9 LYS A 589 -169.14 -123.41 REMARK 500 9 ARG A 671 94.07 53.20 REMARK 500 10 ASN B 525 -41.56 -131.13 REMARK 500 11 ARG A 671 -0.86 69.35 REMARK 500 11 LEU B 527 118.05 60.87 REMARK 500 11 SER B 529 -42.39 -163.94 REMARK 500 13 LEU B 527 -154.96 -108.67 REMARK 500 13 SER B 529 96.93 58.27 REMARK 500 14 SER B 529 -48.73 -155.36 REMARK 500 15 TYR B 523 100.37 61.08 REMARK 500 15 LEU B 527 -46.43 -133.21 REMARK 500 16 SER B 520 121.85 62.30 REMARK 500 16 LEU B 527 -164.58 -101.49 REMARK 500 16 LEU B 528 8.01 59.18 REMARK 500 17 ARG A 671 -1.14 67.49 REMARK 500 17 ASN B 525 128.72 61.67 REMARK 500 17 LEU B 527 -83.43 -101.76 REMARK 500 18 SER B 520 123.37 62.59 REMARK 500 18 SER B 529 -46.77 -134.14 REMARK 500 19 TYR B 523 100.01 58.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 631 0.07 SIDE CHAIN REMARK 500 4 TYR A 631 0.05 SIDE CHAIN REMARK 500 8 TYR A 631 0.07 SIDE CHAIN REMARK 500 9 TYR A 631 0.06 SIDE CHAIN REMARK 500 16 TYR A 631 0.05 SIDE CHAIN REMARK 500 17 TYR A 631 0.08 SIDE CHAIN REMARK 500 18 TYR A 631 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26867 RELATED DB: BMRB DBREF1 5U4K A 586 672 UNP A0A0U1RPQ3_MOUSE DBREF2 5U4K A A0A0U1RPQ3 25 111 DBREF 5U4K B 521 551 UNP Q04206 TF65_HUMAN 521 551 SEQADV 5U4K GLY B 519 UNP Q04206 EXPRESSION TAG SEQADV 5U4K SER B 520 UNP Q04206 EXPRESSION TAG SEQADV 5U4K TYR B 523 UNP Q04206 LEU 523 ENGINEERED MUTATION SEQRES 1 A 87 GLY VAL ARG LYS GLY TRP HIS GLU HIS VAL THR GLN ASP SEQRES 2 A 87 LEU ARG SER HIS LEU VAL HIS LYS LEU VAL GLN ALA ILE SEQRES 3 A 87 PHE PRO THR PRO ASP PRO ALA ALA LEU LYS ASP ARG ARG SEQRES 4 A 87 MET GLU ASN LEU VAL ALA TYR ALA LYS LYS VAL GLU GLY SEQRES 5 A 87 ASP MET TYR GLU SER ALA ASN SER ARG ASP GLU TYR TYR SEQRES 6 A 87 HIS LEU LEU ALA GLU LYS ILE TYR LYS ILE GLN LYS GLU SEQRES 7 A 87 LEU GLU GLU LYS ARG ARG SER ARG LEU SEQRES 1 B 33 GLY SER PRO GLY TYR PRO ASN GLY LEU LEU SER GLY ASP SEQRES 2 B 33 GLU ASP PHE SER SER ILE ALA ASP MET ASP PHE SER ALA SEQRES 3 B 33 LEU LEU SER GLN ILE SER SER HELIX 1 AA1 LYS A 589 VAL A 595 1 7 HELIX 2 AA2 ASP A 598 PHE A 612 1 15 HELIX 3 AA3 ALA A 618 LYS A 621 5 4 HELIX 4 AA4 ASP A 622 ALA A 643 1 22 HELIX 5 AA5 SER A 645 LYS A 667 1 23 HELIX 6 AA6 ASP B 541 SER B 551 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1