HEADER LYASE 05-DEC-16 5U4N TITLE CRYSTAL STRUCTURE OF A FRUCTOSE-BISPHOSPHATE ALDOLASE FROM NEISSERIA TITLE 2 GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: FDA, WHOF_00031C, WHOF_00393, WHOG_00032C, WHOG_01091, SOURCE 5 WHOK_00031C, WHOK_01288, WHOL_00032C, WHOL_00481, WHOM_00032C, SOURCE 6 WHOM_00338, WHON_00032C, WHON_00415, WHOO_00031C, WHOO_00479, SOURCE 7 WHOP_00030C, WHOP_00448, WHOU_00032C, WHOU_01170, WHOV_00032C, SOURCE 8 WHOV_01444, WHOW_00031C, WHOW_01140, WHOX_00032C, WHOX_00360, SOURCE 9 WHOY_00032C, WHOY_00387, WHOZ_00031C, WHOZ_00311; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, FRUCTOSE, PHOSPHATE, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5U4N 1 REMARK REVDAT 1 21-DEC-16 5U4N 0 JRNL AUTH T.E.EDWARDS,P.S.HORANYI,D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A FRUCTOSE-BISPHOSPHATE ALDOLASE FROM JRNL TITL 2 NEISSERIA GONORRHOEAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7712 - 3.8539 1.00 3110 132 0.1387 0.1501 REMARK 3 2 3.8539 - 3.0598 1.00 2996 134 0.1332 0.1552 REMARK 3 3 3.0598 - 2.6733 1.00 2978 144 0.1482 0.1682 REMARK 3 4 2.6733 - 2.4290 1.00 2941 146 0.1434 0.1698 REMARK 3 5 2.4290 - 2.2549 1.00 2940 148 0.1423 0.1825 REMARK 3 6 2.2549 - 2.1220 1.00 2905 146 0.1430 0.1997 REMARK 3 7 2.1220 - 2.0158 1.00 2940 147 0.1404 0.1891 REMARK 3 8 2.0158 - 1.9280 1.00 2941 116 0.1462 0.1541 REMARK 3 9 1.9280 - 1.8538 1.00 2926 141 0.1495 0.1886 REMARK 3 10 1.8538 - 1.7899 1.00 2908 139 0.1539 0.1897 REMARK 3 11 1.7899 - 1.7339 1.00 2935 126 0.1622 0.1912 REMARK 3 12 1.7339 - 1.6843 1.00 2943 115 0.1706 0.2450 REMARK 3 13 1.6843 - 1.6400 1.00 2869 164 0.1747 0.2116 REMARK 3 14 1.6400 - 1.6000 0.99 2891 144 0.1972 0.2323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2747 REMARK 3 ANGLE : 0.788 3746 REMARK 3 CHIRALITY : 0.055 424 REMARK 3 PLANARITY : 0.005 498 REMARK 3 DIHEDRAL : 14.427 1667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5616 -25.9153 -6.5636 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0801 REMARK 3 T33: 0.0740 T12: 0.0154 REMARK 3 T13: -0.0082 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.1652 L22: 1.8062 REMARK 3 L33: 1.2896 L12: 1.6743 REMARK 3 L13: -1.0971 L23: -0.9037 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.1097 S13: -0.0779 REMARK 3 S21: 0.0276 S22: -0.0061 S23: -0.0994 REMARK 3 S31: 0.0250 S32: 0.0302 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1134 -27.0807 -17.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.1053 REMARK 3 T33: 0.1312 T12: -0.0228 REMARK 3 T13: 0.0074 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.4868 L22: 1.3288 REMARK 3 L33: 5.8326 L12: 0.3554 REMARK 3 L13: -1.6273 L23: -1.1478 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: 0.0471 S13: -0.0510 REMARK 3 S21: -0.1256 S22: 0.0371 S23: -0.1389 REMARK 3 S31: 0.2680 S32: -0.0709 S33: 0.0633 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3888 -30.3299 -18.5932 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1134 REMARK 3 T33: 0.0806 T12: -0.0101 REMARK 3 T13: 0.0025 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 3.0235 L22: 0.9868 REMARK 3 L33: 0.9624 L12: -0.5269 REMARK 3 L13: 0.7018 L23: -0.4040 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.1791 S13: -0.0235 REMARK 3 S21: -0.1341 S22: 0.0128 S23: -0.0239 REMARK 3 S31: 0.0705 S32: 0.0472 S33: 0.0290 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8192 -19.5448 -12.9471 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.1311 REMARK 3 T33: 0.1551 T12: -0.0003 REMARK 3 T13: -0.0105 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.5036 L22: 3.2982 REMARK 3 L33: 2.0025 L12: -1.4235 REMARK 3 L13: -0.2474 L23: 0.4006 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: 0.1960 S13: 0.4199 REMARK 3 S21: -0.1786 S22: -0.0345 S23: -0.1000 REMARK 3 S31: -0.2582 S32: -0.1428 S33: -0.0552 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0319 -14.2043 -5.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.1387 REMARK 3 T33: 0.0988 T12: 0.0021 REMARK 3 T13: -0.0100 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.4804 L22: 4.3658 REMARK 3 L33: 0.8897 L12: 0.8496 REMARK 3 L13: -0.6076 L23: -0.9702 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: -0.1073 S13: 0.2277 REMARK 3 S21: 0.2030 S22: -0.0381 S23: 0.1583 REMARK 3 S31: -0.1657 S32: -0.0495 S33: -0.0960 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4654 -10.6190 -8.7305 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.0925 REMARK 3 T33: 0.1032 T12: -0.0079 REMARK 3 T13: -0.0038 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.4600 L22: 0.7261 REMARK 3 L33: 0.6825 L12: 0.4671 REMARK 3 L13: -0.6751 L23: -0.3630 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: -0.1794 S13: 0.2331 REMARK 3 S21: 0.0602 S22: -0.0043 S23: 0.0208 REMARK 3 S31: -0.0977 S32: 0.0660 S33: -0.0744 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7835 -38.8115 -3.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.1483 REMARK 3 T33: 0.1275 T12: -0.0135 REMARK 3 T13: 0.0030 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 3.5558 L22: 6.7586 REMARK 3 L33: 2.7708 L12: 3.3705 REMARK 3 L13: 2.9040 L23: 3.3274 REMARK 3 S TENSOR REMARK 3 S11: 0.4180 S12: -0.3184 S13: -0.2946 REMARK 3 S21: 0.4319 S22: -0.3426 S23: -0.0074 REMARK 3 S31: 0.4966 S32: -0.1100 S33: -0.1121 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.766 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.788 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.33 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NEGOA.01416.A.PS37962 AT 21.2 MG/ML REMARK 280 AGAINST MCSG 1 SCREEN CONDITION G11 0.1 M PHOSPHATE CITRATE PH REMARK 280 4.2, 40% PEG 300, CRYSTAL TRACKING ID 282713A1, UNIQUE PUCK ID REMARK 280 NCE6-10, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.47500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.87500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.47500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.87500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.47500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.87500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.47500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.87500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.62000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLN A 351 REMARK 465 ILE A 352 REMARK 465 VAL A 353 REMARK 465 LYS A 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 LYS A 339 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 157 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 113 -25.89 -140.29 REMARK 500 TYR A 201 58.05 -98.09 REMARK 500 VAL A 237 82.97 61.35 REMARK 500 ASP A 277 -58.26 -136.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-NEGOA.01416.A RELATED DB: TARGETTRACK DBREF1 5U4N A 1 354 UNP A0A1D3HPF5_NEIGO DBREF2 5U4N A A0A1D3HPF5 1 354 SEQADV 5U4N MET A -7 UNP A0A1D3HPF INITIATING METHIONINE SEQADV 5U4N ALA A -6 UNP A0A1D3HPF EXPRESSION TAG SEQADV 5U4N HIS A -5 UNP A0A1D3HPF EXPRESSION TAG SEQADV 5U4N HIS A -4 UNP A0A1D3HPF EXPRESSION TAG SEQADV 5U4N HIS A -3 UNP A0A1D3HPF EXPRESSION TAG SEQADV 5U4N HIS A -2 UNP A0A1D3HPF EXPRESSION TAG SEQADV 5U4N HIS A -1 UNP A0A1D3HPF EXPRESSION TAG SEQADV 5U4N HIS A 0 UNP A0A1D3HPF EXPRESSION TAG SEQRES 1 A 362 MET ALA HIS HIS HIS HIS HIS HIS MET ALA LEU VAL SER SEQRES 2 A 362 MET ARG GLN LEU LEU ASP HIS ALA ALA GLU ASN SER TYR SEQRES 3 A 362 GLY LEU PRO ALA PHE ASN VAL ASN ASN LEU GLU GLN MET SEQRES 4 A 362 ARG ALA ILE MET GLU ALA ALA ASP GLN VAL ASN ALA PRO SEQRES 5 A 362 VAL ILE VAL GLN ALA SER ALA GLY ALA ARG LYS TYR ALA SEQRES 6 A 362 GLY ALA PRO PHE LEU ARG HIS LEU ILE LEU ALA ALA VAL SEQRES 7 A 362 GLU GLU PHE PRO HIS ILE PRO VAL VAL MET HIS GLN ASP SEQRES 8 A 362 HIS GLY ALA SER PRO ASP VAL CYS GLN ARG SER ILE GLN SEQRES 9 A 362 LEU GLY PHE SER SER VAL MET MET ASP GLY SER LEU LEU SEQRES 10 A 362 GLU ASP GLY LYS THR PRO SER SER TYR GLU TYR ASN VAL SEQRES 11 A 362 ASN ALA THR ARG THR VAL VAL ASN PHE SER HIS ALA CYS SEQRES 12 A 362 GLY VAL SER VAL GLU GLY GLU ILE GLY VAL LEU GLY ASN SEQRES 13 A 362 LEU GLU THR GLY GLU ALA GLY GLU GLU ASP GLY VAL GLY SEQRES 14 A 362 ALA ALA GLY LYS LEU SER HIS ASP GLN MET LEU THR SER SEQRES 15 A 362 VAL GLU ASP ALA VAL ARG PHE VAL LYS ASP THR GLY VAL SEQRES 16 A 362 ASP ALA LEU ALA ILE ALA VAL GLY THR SER HIS GLY ALA SEQRES 17 A 362 TYR LYS PHE THR ARG PRO PRO THR GLY ASP VAL LEU ARG SEQRES 18 A 362 ILE ASP ARG ILE LYS GLU ILE HIS GLN ALA LEU PRO ASN SEQRES 19 A 362 THR HIS ILE VAL MET HIS GLY SER SER SER VAL PRO GLN SEQRES 20 A 362 GLU TRP LEU LYS VAL ILE ASN GLU TYR GLY GLY ASN ILE SEQRES 21 A 362 GLY GLU THR TYR GLY VAL PRO VAL GLU GLU ILE VAL GLU SEQRES 22 A 362 GLY ILE LYS HIS GLY VAL ARG LYS VAL ASN ILE ASP THR SEQRES 23 A 362 ASP LEU ARG LEU ALA SER THR GLY ALA VAL ARG ARG TYR SEQRES 24 A 362 LEU ALA GLU ASN PRO SER ASP PHE ASP PRO ARG LYS TYR SEQRES 25 A 362 LEU GLY LYS THR ILE GLU ALA MET LYS GLN ILE CYS LEU SEQRES 26 A 362 ASP ARG TYR LEU ALA PHE GLY CYS GLU GLY GLN ALA GLY SEQRES 27 A 362 LYS ILE LYS PRO VAL SER LEU GLU LYS MET ALA SER ARG SEQRES 28 A 362 TYR ALA LYS GLY GLU LEU ASN GLN ILE VAL LYS HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET EDO A 404 4 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *341(H2 O) HELIX 1 AA1 SER A 5 ASN A 16 1 12 HELIX 2 AA2 ASN A 27 ASN A 42 1 16 HELIX 3 AA3 SER A 50 GLY A 58 1 9 HELIX 4 AA4 GLY A 58 PHE A 73 1 16 HELIX 5 AA5 SER A 87 LEU A 97 1 11 HELIX 6 AA6 SER A 117 ALA A 134 1 18 HELIX 7 AA7 SER A 167 LEU A 172 1 6 HELIX 8 AA8 SER A 174 GLY A 186 1 13 HELIX 9 AA9 ARG A 213 LEU A 224 1 12 HELIX 10 AB1 PRO A 238 TYR A 248 1 11 HELIX 11 AB2 PRO A 259 HIS A 269 1 11 HELIX 12 AB3 ASP A 277 ASN A 295 1 19 HELIX 13 AB4 ASP A 300 PHE A 323 1 24 HELIX 14 AB5 GLY A 327 ILE A 332 5 6 HELIX 15 AB6 SER A 336 LYS A 346 1 11 SHEET 1 AA1 9 LEU A 20 ASN A 24 0 SHEET 2 AA1 9 VAL A 45 ALA A 49 1 O GLN A 48 N PHE A 23 SHEET 3 AA1 9 VAL A 78 GLY A 85 1 O HIS A 81 N VAL A 47 SHEET 4 AA1 9 SER A 101 MET A 104 1 O MET A 103 N GLN A 82 SHEET 5 AA1 9 SER A 138 ILE A 143 1 O GLU A 140 N VAL A 102 SHEET 6 AA1 9 ALA A 189 ILE A 192 1 O ALA A 191 N GLY A 141 SHEET 7 AA1 9 ILE A 229 MET A 231 1 O VAL A 230 N LEU A 190 SHEET 8 AA1 9 VAL A 271 ILE A 276 1 O ASN A 275 N MET A 231 SHEET 9 AA1 9 LEU A 20 ASN A 24 1 N ALA A 22 O VAL A 274 SITE 1 AC1 11 GLY A 199 LYS A 202 GLY A 233 SER A 234 SITE 2 AC1 11 SER A 235 ASN A 275 ASP A 277 THR A 278 SITE 3 AC1 11 PO4 A 402 HOH A 501 HOH A 555 SITE 1 AC2 9 ASP A 83 HIS A 84 GLU A 157 HIS A 198 SITE 2 AC2 9 HIS A 232 GLY A 233 ASN A 275 PO4 A 401 SITE 3 AC2 9 HOH A 555 SITE 1 AC3 10 ALA A 14 HIS A 221 PRO A 225 ASN A 226 SITE 2 AC3 10 THR A 227 HIS A 228 GLY A 270 ARG A 272 SITE 3 AC3 10 HOH A 516 HOH A 547 SITE 1 AC4 4 GLU A 240 TRP A 241 ARG A 290 HOH A 610 CRYST1 82.950 91.750 85.240 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011732 0.00000