HEADER LYASE 07-DEC-16 5U63 TITLE CRYSTAL STRUCTURE OF PUTATIVE THIOREDOXIN REDUCTASE FROM HAEMOPHILUS TITLE 2 INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRXR; COMPND 5 EC: 1.8.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRXB, HI_1158; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS COFACTOR, NUCLEOTIDE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,N.MALTSEVA,R.MULLIGAN,S.GRIMSHAW,A.JOACHIMIAK, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 04-OCT-23 5U63 1 REMARK REVDAT 3 23-MAR-22 5U63 1 REMARK REVDAT 2 20-SEP-17 5U63 1 REMARK REVDAT 1 21-DEC-16 5U63 0 JRNL AUTH K.MICHALSKA,N.MALTSEVA,R.MULLIGAN,S.GRIMSHAW,A.JOACHIMIAK, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE THIOREDOXIN REDUCTASE FROM JRNL TITL 2 HAEMOPHILUS INFLUENZAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 49207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7628 - 4.4204 1.00 4657 134 0.1370 0.1659 REMARK 3 2 4.4204 - 3.5104 1.00 4443 142 0.1195 0.1465 REMARK 3 3 3.5104 - 3.0671 1.00 4379 160 0.1410 0.1716 REMARK 3 4 3.0671 - 2.7869 1.00 4392 137 0.1578 0.1884 REMARK 3 5 2.7869 - 2.5873 1.00 4381 132 0.1597 0.1965 REMARK 3 6 2.5873 - 2.4348 1.00 4325 158 0.1644 0.2421 REMARK 3 7 2.4348 - 2.3129 1.00 4360 120 0.1668 0.2204 REMARK 3 8 2.3129 - 2.2123 1.00 4350 135 0.1679 0.2156 REMARK 3 9 2.2123 - 2.1272 1.00 4330 119 0.1740 0.1741 REMARK 3 10 2.1272 - 2.0538 1.00 4310 137 0.1873 0.2414 REMARK 3 11 2.0538 - 1.9896 0.88 3805 101 0.2161 0.2623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5151 REMARK 3 ANGLE : 1.037 6991 REMARK 3 CHIRALITY : 0.062 777 REMARK 3 PLANARITY : 0.006 888 REMARK 3 DIHEDRAL : 17.640 2981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6193 62.5783 41.2334 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.2747 REMARK 3 T33: 0.2394 T12: 0.0041 REMARK 3 T13: -0.0600 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.4386 L22: 3.9865 REMARK 3 L33: 2.3480 L12: 0.0203 REMARK 3 L13: 0.0095 L23: 1.6870 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.2250 S13: 0.1788 REMARK 3 S21: 0.4335 S22: 0.0783 S23: -0.2670 REMARK 3 S31: -0.0363 S32: 0.1557 S33: -0.0900 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5845 60.4247 47.8103 REMARK 3 T TENSOR REMARK 3 T11: 0.4824 T22: 0.3054 REMARK 3 T33: 0.2615 T12: 0.0095 REMARK 3 T13: -0.0323 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.4101 L22: 0.7234 REMARK 3 L33: 0.3061 L12: 0.0896 REMARK 3 L13: -0.4936 L23: -0.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.3301 S13: 0.1178 REMARK 3 S21: 0.4086 S22: 0.0224 S23: -0.0909 REMARK 3 S31: -0.0103 S32: 0.1028 S33: -0.1431 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7622 51.8234 40.1074 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.1712 REMARK 3 T33: 0.1942 T12: -0.0528 REMARK 3 T13: 0.0127 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.1307 L22: 4.9492 REMARK 3 L33: 3.8605 L12: -0.7768 REMARK 3 L13: -0.4132 L23: 1.8217 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.0836 S13: -0.0071 REMARK 3 S21: 0.2085 S22: -0.1154 S23: 0.3032 REMARK 3 S31: -0.0431 S32: -0.2271 S33: 0.0631 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0142 68.3092 38.7264 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.2491 REMARK 3 T33: 0.2753 T12: 0.0426 REMARK 3 T13: -0.0242 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.1976 L22: 2.0129 REMARK 3 L33: 0.1565 L12: 0.6343 REMARK 3 L13: -0.2845 L23: 0.2554 REMARK 3 S TENSOR REMARK 3 S11: 0.1933 S12: -0.1451 S13: 0.2099 REMARK 3 S21: 0.3240 S22: -0.0832 S23: 0.0708 REMARK 3 S31: -0.0767 S32: 0.0501 S33: -0.1536 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8579 69.5183 28.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.1970 REMARK 3 T33: 0.2554 T12: 0.0106 REMARK 3 T13: 0.0237 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.7770 L22: 4.5903 REMARK 3 L33: 3.5296 L12: 0.2314 REMARK 3 L13: 0.8256 L23: 1.2340 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: 0.0905 S13: 0.3269 REMARK 3 S21: -0.1034 S22: 0.0365 S23: -0.3098 REMARK 3 S31: -0.4104 S32: 0.1843 S33: -0.0843 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9784 48.1613 12.3553 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.2355 REMARK 3 T33: 0.1774 T12: 0.0431 REMARK 3 T13: 0.0188 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.0068 L22: 1.6006 REMARK 3 L33: 2.4600 L12: -0.3931 REMARK 3 L13: -0.0556 L23: -0.0852 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: 0.4346 S13: -0.0531 REMARK 3 S21: -0.2752 S22: -0.1218 S23: -0.0902 REMARK 3 S31: 0.1646 S32: -0.0732 S33: -0.0069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.9825 55.8366 14.7787 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.4685 REMARK 3 T33: 0.7583 T12: -0.0322 REMARK 3 T13: 0.1067 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 3.4989 L22: 2.9523 REMARK 3 L33: 5.1157 L12: 0.3631 REMARK 3 L13: -0.3293 L23: -0.2942 REMARK 3 S TENSOR REMARK 3 S11: 0.2528 S12: -0.0589 S13: 0.5425 REMARK 3 S21: -0.1695 S22: -0.1366 S23: -0.6617 REMARK 3 S31: -0.4149 S32: 0.6362 S33: -0.0977 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0052 60.5023 13.0506 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.2751 REMARK 3 T33: 0.2303 T12: 0.0303 REMARK 3 T13: 0.0414 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.4088 L22: 1.5823 REMARK 3 L33: 1.8785 L12: -0.3637 REMARK 3 L13: -0.1525 L23: 0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: 0.4449 S13: 0.2175 REMARK 3 S21: -0.2906 S22: -0.0710 S23: -0.1713 REMARK 3 S31: -0.2450 S32: -0.1013 S33: -0.0209 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49269 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 1.11700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TDE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MG ACETATE, 0.08 M NA REMARK 280 CACODYLATE, PH 6.5, 16% PEG 8K, 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.65650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.98700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.65650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.98700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 318 REMARK 465 GLU B 317 REMARK 465 ALA B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 39 77.96 -119.64 REMARK 500 ASP A 48 -105.88 -91.56 REMARK 500 GLU A 58 -101.02 -102.22 REMARK 500 ASP A 214 -158.22 -134.42 REMARK 500 SER A 267 -156.06 59.19 REMARK 500 ASP B 48 -105.89 -92.07 REMARK 500 GLU B 58 -98.74 -102.73 REMARK 500 ILE B 168 -52.96 -125.27 REMARK 500 ASP B 214 -156.96 -111.30 REMARK 500 SER B 267 -153.61 55.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 407 REMARK 610 NAP B 406 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 59 O REMARK 620 2 GOL B 402 O2 96.5 REMARK 620 3 HOH B 549 O 159.5 64.9 REMARK 620 4 HOH B 600 O 104.3 83.1 83.0 REMARK 620 5 HOH B 601 O 85.5 91.7 86.4 169.4 REMARK 620 6 HOH B 624 O 79.3 170.0 120.5 89.0 97.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP07488 RELATED DB: TARGETTRACK DBREF 5U63 A 1 318 UNP P43788 TRXB_HAEIN 1 318 DBREF 5U63 B 1 318 UNP P43788 TRXB_HAEIN 1 318 SEQADV 5U63 SER A -2 UNP P43788 EXPRESSION TAG SEQADV 5U63 ASN A -1 UNP P43788 EXPRESSION TAG SEQADV 5U63 ALA A 0 UNP P43788 EXPRESSION TAG SEQADV 5U63 SER B -2 UNP P43788 EXPRESSION TAG SEQADV 5U63 ASN B -1 UNP P43788 EXPRESSION TAG SEQADV 5U63 ALA B 0 UNP P43788 EXPRESSION TAG SEQRES 1 A 321 SER ASN ALA MET SER ASP ILE LYS HIS ALA LYS LEU LEU SEQRES 2 A 321 ILE LEU GLY SER GLY PRO ALA GLY TYR THR ALA ALA ILE SEQRES 3 A 321 TYR ALA ALA ARG ALA ASN LEU LYS PRO VAL LEU VAL THR SEQRES 4 A 321 GLY LEU GLN GLN GLY GLY GLN LEU THR THR THR ASP GLU SEQRES 5 A 321 ILE GLU ASN TRP PRO GLY ASP PHE GLU MET THR THR GLY SEQRES 6 A 321 SER GLY LEU MET GLN ARG MET LEU GLN HIS ALA GLU LYS SEQRES 7 A 321 PHE GLU THR GLU ILE VAL PHE ASP HIS ILE ASN ARG VAL SEQRES 8 A 321 ASP LEU SER SER ARG PRO PHE LYS LEU PHE GLY ASP VAL SEQRES 9 A 321 GLN ASN PHE THR CYS ASP ALA LEU ILE ILE ALA THR GLY SEQRES 10 A 321 ALA SER ALA ARG TYR ILE GLY LEU PRO SER GLU GLU ASN SEQRES 11 A 321 TYR LYS GLY ARG GLY VAL SER ALA CYS ALA THR CYS ASP SEQRES 12 A 321 GLY PHE PHE TYR ARG ASN LYS PRO VAL GLY VAL ILE GLY SEQRES 13 A 321 GLY GLY ASN THR ALA VAL GLU GLU ALA LEU TYR LEU ALA SEQRES 14 A 321 ASN ILE ALA SER THR VAL HIS LEU ILE HIS ARG ARG ASP SEQRES 15 A 321 SER PHE ARG ALA GLU LYS ILE LEU ILE ASP ARG LEU TYR SEQRES 16 A 321 LYS LYS VAL GLU GLU GLY LYS ILE VAL LEU HIS THR ASP SEQRES 17 A 321 ARG THR LEU ASP GLU VAL LEU GLY ASP ASN MET GLY VAL SEQRES 18 A 321 THR GLY LEU ARG LEU ALA ASN THR LYS THR GLY GLU LYS SEQRES 19 A 321 GLU GLU LEU LYS LEU ASP GLY LEU PHE VAL ALA ILE GLY SEQRES 20 A 321 HIS SER PRO ASN THR GLU ILE PHE GLN GLY GLN LEU GLU SEQRES 21 A 321 LEU ASN ASN GLY TYR ILE VAL VAL LYS SER GLY LEU ASP SEQRES 22 A 321 GLY ASN ALA THR ALA THR SER VAL GLU GLY VAL PHE ALA SEQRES 23 A 321 ALA GLY ASP VAL MET ASP HIS ASN TYR ARG GLN ALA ILE SEQRES 24 A 321 THR SER ALA GLY THR GLY CYS MET ALA ALA LEU ASP ALA SEQRES 25 A 321 GLU ARG TYR LEU ASP ALA GLN GLU ALA SEQRES 1 B 321 SER ASN ALA MET SER ASP ILE LYS HIS ALA LYS LEU LEU SEQRES 2 B 321 ILE LEU GLY SER GLY PRO ALA GLY TYR THR ALA ALA ILE SEQRES 3 B 321 TYR ALA ALA ARG ALA ASN LEU LYS PRO VAL LEU VAL THR SEQRES 4 B 321 GLY LEU GLN GLN GLY GLY GLN LEU THR THR THR ASP GLU SEQRES 5 B 321 ILE GLU ASN TRP PRO GLY ASP PHE GLU MET THR THR GLY SEQRES 6 B 321 SER GLY LEU MET GLN ARG MET LEU GLN HIS ALA GLU LYS SEQRES 7 B 321 PHE GLU THR GLU ILE VAL PHE ASP HIS ILE ASN ARG VAL SEQRES 8 B 321 ASP LEU SER SER ARG PRO PHE LYS LEU PHE GLY ASP VAL SEQRES 9 B 321 GLN ASN PHE THR CYS ASP ALA LEU ILE ILE ALA THR GLY SEQRES 10 B 321 ALA SER ALA ARG TYR ILE GLY LEU PRO SER GLU GLU ASN SEQRES 11 B 321 TYR LYS GLY ARG GLY VAL SER ALA CYS ALA THR CYS ASP SEQRES 12 B 321 GLY PHE PHE TYR ARG ASN LYS PRO VAL GLY VAL ILE GLY SEQRES 13 B 321 GLY GLY ASN THR ALA VAL GLU GLU ALA LEU TYR LEU ALA SEQRES 14 B 321 ASN ILE ALA SER THR VAL HIS LEU ILE HIS ARG ARG ASP SEQRES 15 B 321 SER PHE ARG ALA GLU LYS ILE LEU ILE ASP ARG LEU TYR SEQRES 16 B 321 LYS LYS VAL GLU GLU GLY LYS ILE VAL LEU HIS THR ASP SEQRES 17 B 321 ARG THR LEU ASP GLU VAL LEU GLY ASP ASN MET GLY VAL SEQRES 18 B 321 THR GLY LEU ARG LEU ALA ASN THR LYS THR GLY GLU LYS SEQRES 19 B 321 GLU GLU LEU LYS LEU ASP GLY LEU PHE VAL ALA ILE GLY SEQRES 20 B 321 HIS SER PRO ASN THR GLU ILE PHE GLN GLY GLN LEU GLU SEQRES 21 B 321 LEU ASN ASN GLY TYR ILE VAL VAL LYS SER GLY LEU ASP SEQRES 22 B 321 GLY ASN ALA THR ALA THR SER VAL GLU GLY VAL PHE ALA SEQRES 23 B 321 ALA GLY ASP VAL MET ASP HIS ASN TYR ARG GLN ALA ILE SEQRES 24 B 321 THR SER ALA GLY THR GLY CYS MET ALA ALA LEU ASP ALA SEQRES 25 B 321 GLU ARG TYR LEU ASP ALA GLN GLU ALA HET FAD A 401 53 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET ACT A 405 4 HET ACT A 406 4 HET NAP A 407 31 HET FAD B 401 53 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET ACT B 405 4 HET NAP B 406 31 HET NA B 407 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 9 NAP 2(C21 H28 N7 O17 P3) FORMUL 16 NA NA 1+ FORMUL 17 HOH *358(H2 O) HELIX 1 AA1 GLY A 15 ALA A 28 1 14 HELIX 2 AA2 GLY A 42 THR A 47 5 6 HELIX 3 AA3 THR A 61 PHE A 76 1 16 HELIX 4 AA4 LEU A 122 LYS A 129 1 8 HELIX 5 AA5 CYS A 136 GLY A 141 1 6 HELIX 6 AA6 PHE A 142 ARG A 145 5 4 HELIX 7 AA7 GLY A 155 ASN A 167 1 13 HELIX 8 AA8 GLU A 184 GLU A 197 1 14 HELIX 9 AA9 THR A 249 GLN A 253 5 5 HELIX 10 AB1 GLY A 285 ASP A 289 5 5 HELIX 11 AB2 GLN A 294 GLN A 316 1 23 HELIX 12 AB3 GLY B 15 ALA B 28 1 14 HELIX 13 AB4 GLY B 41 THR B 47 5 7 HELIX 14 AB5 GLY B 62 PHE B 76 1 15 HELIX 15 AB6 LEU B 122 LYS B 129 1 8 HELIX 16 AB7 CYS B 136 GLY B 141 1 6 HELIX 17 AB8 PHE B 142 ARG B 145 5 4 HELIX 18 AB9 GLY B 155 ALA B 166 1 12 HELIX 19 AC1 GLU B 184 GLU B 197 1 14 HELIX 20 AC2 THR B 249 GLN B 253 5 5 HELIX 21 AC3 GLY B 285 MET B 288 5 4 HELIX 22 AC4 GLN B 294 GLN B 316 1 23 SHEET 1 AA1 6 GLU A 79 VAL A 81 0 SHEET 2 AA1 6 VAL A 33 VAL A 35 1 N LEU A 34 O GLU A 79 SHEET 3 AA1 6 LYS A 5 LEU A 12 1 N ILE A 11 O VAL A 35 SHEET 4 AA1 6 ASN A 103 ILE A 111 1 O ILE A 110 N LEU A 12 SHEET 5 AA1 6 PHE A 95 GLY A 99 -1 N LEU A 97 O PHE A 104 SHEET 6 AA1 6 ILE A 85 ASP A 89 -1 N ARG A 87 O PHE A 98 SHEET 1 AA2 5 GLU A 79 VAL A 81 0 SHEET 2 AA2 5 VAL A 33 VAL A 35 1 N LEU A 34 O GLU A 79 SHEET 3 AA2 5 LYS A 5 LEU A 12 1 N ILE A 11 O VAL A 35 SHEET 4 AA2 5 ASN A 103 ILE A 111 1 O ILE A 110 N LEU A 12 SHEET 5 AA2 5 VAL A 281 ALA A 283 1 O PHE A 282 N ILE A 111 SHEET 1 AA3 2 ALA A 115 ALA A 117 0 SHEET 2 AA3 2 HIS A 245 PRO A 247 -1 O SER A 246 N SER A 116 SHEET 1 AA4 5 VAL A 133 SER A 134 0 SHEET 2 AA4 5 GLY A 238 VAL A 241 1 O VAL A 241 N SER A 134 SHEET 3 AA4 5 PRO A 148 ILE A 152 1 N GLY A 150 O GLY A 238 SHEET 4 AA4 5 THR A 171 ILE A 175 1 O ILE A 175 N VAL A 151 SHEET 5 AA4 5 ILE A 200 HIS A 203 1 O VAL A 201 N VAL A 172 SHEET 1 AA5 3 ARG A 206 GLY A 213 0 SHEET 2 AA5 3 VAL A 218 ASN A 225 -1 O ARG A 222 N ASP A 209 SHEET 3 AA5 3 LYS A 231 LYS A 235 -1 O GLU A 232 N LEU A 223 SHEET 1 AA6 2 LEU A 258 ASN A 259 0 SHEET 2 AA6 2 TYR A 262 ILE A 263 -1 O TYR A 262 N ASN A 259 SHEET 1 AA7 6 GLU B 79 VAL B 81 0 SHEET 2 AA7 6 VAL B 33 VAL B 35 1 N LEU B 34 O VAL B 81 SHEET 3 AA7 6 ILE B 4 LEU B 12 1 N ILE B 11 O VAL B 35 SHEET 4 AA7 6 ASN B 103 ILE B 111 1 O ILE B 110 N LEU B 10 SHEET 5 AA7 6 PHE B 95 GLY B 99 -1 N LEU B 97 O PHE B 104 SHEET 6 AA7 6 ILE B 85 ASP B 89 -1 N ARG B 87 O PHE B 98 SHEET 1 AA8 5 GLU B 79 VAL B 81 0 SHEET 2 AA8 5 VAL B 33 VAL B 35 1 N LEU B 34 O VAL B 81 SHEET 3 AA8 5 ILE B 4 LEU B 12 1 N ILE B 11 O VAL B 35 SHEET 4 AA8 5 ASN B 103 ILE B 111 1 O ILE B 110 N LEU B 10 SHEET 5 AA8 5 VAL B 281 ALA B 283 1 O PHE B 282 N ILE B 111 SHEET 1 AA9 2 GLU B 49 ILE B 50 0 SHEET 2 AA9 2 THR B 60 THR B 61 -1 O THR B 60 N ILE B 50 SHEET 1 AB1 2 ALA B 115 ALA B 117 0 SHEET 2 AB1 2 HIS B 245 PRO B 247 -1 O SER B 246 N SER B 116 SHEET 1 AB2 5 VAL B 133 SER B 134 0 SHEET 2 AB2 5 GLY B 238 VAL B 241 1 O VAL B 241 N SER B 134 SHEET 3 AB2 5 PRO B 148 ILE B 152 1 N GLY B 150 O PHE B 240 SHEET 4 AB2 5 THR B 171 ILE B 175 1 O ILE B 175 N VAL B 151 SHEET 5 AB2 5 ILE B 200 HIS B 203 1 O HIS B 203 N LEU B 174 SHEET 1 AB3 3 ARG B 206 GLY B 213 0 SHEET 2 AB3 3 VAL B 218 ASN B 225 -1 O THR B 219 N LEU B 212 SHEET 3 AB3 3 LYS B 231 LYS B 235 -1 O GLU B 232 N LEU B 223 SHEET 1 AB4 2 LEU B 258 ASN B 259 0 SHEET 2 AB4 2 TYR B 262 ILE B 263 -1 O TYR B 262 N ASN B 259 SSBOND 1 CYS A 136 CYS A 139 1555 1555 2.11 SSBOND 2 CYS B 136 CYS B 139 1555 1555 2.07 LINK O MET B 59 NA NA B 407 1555 1555 2.53 LINK O2 GOL B 402 NA NA B 407 1555 1555 2.50 LINK NA NA B 407 O HOH B 549 1555 1555 2.57 LINK NA NA B 407 O HOH B 600 1555 1555 2.48 LINK NA NA B 407 O HOH B 601 1555 1555 2.47 LINK NA NA B 407 O HOH B 624 1555 1555 2.30 CISPEP 1 ARG A 93 PRO A 94 0 -0.25 CISPEP 2 ARG B 93 PRO B 94 0 2.30 SITE 1 AC1 39 GLY A 13 SER A 14 GLY A 15 PRO A 16 SITE 2 AC1 39 ALA A 17 THR A 36 GLY A 37 LEU A 38 SITE 3 AC1 39 GLN A 39 GLY A 42 GLN A 43 LEU A 44 SITE 4 AC1 39 THR A 47 ILE A 50 ASN A 52 HIS A 84 SITE 5 AC1 39 ILE A 85 ALA A 112 THR A 113 GLY A 114 SITE 6 AC1 39 ALA A 115 GLU A 160 HIS A 245 GLY A 285 SITE 7 AC1 39 ASP A 286 ARG A 293 GLN A 294 ALA A 295 SITE 8 AC1 39 SER A 298 ACT A 405 HOH A 512 HOH A 515 SITE 9 AC1 39 HOH A 532 HOH A 539 HOH A 543 HOH A 561 SITE 10 AC1 39 HOH A 620 HOH A 626 TYR B 24 SITE 1 AC2 5 ALA A 26 ASN A 29 PHE A 76 GLU A 77 SITE 2 AC2 5 HOH B 546 SITE 1 AC3 4 GLY A 268 HOH A 503 SER B 267 GOL B 404 SITE 1 AC4 5 ARG A 177 GLY A 254 LEU A 256 GLU A 257 SITE 2 AC4 5 HOH A 623 SITE 1 AC5 4 GLY A 37 LEU A 38 HIS A 84 FAD A 401 SITE 1 AC6 4 HIS A 176 SER A 180 ARG A 182 NAP A 407 SITE 1 AC7 17 ARG A 118 GLY A 154 GLY A 155 HIS A 176 SITE 2 AC7 17 ARG A 177 ARG A 178 ARG A 182 ILE A 243 SITE 3 AC7 17 GLY A 244 HIS A 245 GLY A 254 ACT A 406 SITE 4 AC7 17 HOH A 555 HOH A 582 HOH A 593 HOH A 594 SITE 5 AC7 17 HOH A 652 SITE 1 AC8 38 TYR A 24 GLY B 13 SER B 14 GLY B 15 SITE 2 AC8 38 PRO B 16 ALA B 17 THR B 36 GLY B 37 SITE 3 AC8 38 LEU B 38 GLN B 39 GLY B 42 GLN B 43 SITE 4 AC8 38 LEU B 44 THR B 47 ILE B 50 ASN B 52 SITE 5 AC8 38 HIS B 84 ILE B 85 ALA B 112 THR B 113 SITE 6 AC8 38 GLY B 114 ALA B 115 HIS B 245 GLY B 285 SITE 7 AC8 38 ASP B 286 ARG B 293 GLN B 294 ALA B 295 SITE 8 AC8 38 SER B 298 ACT B 405 HOH B 511 HOH B 522 SITE 9 AC8 38 HOH B 529 HOH B 532 HOH B 542 HOH B 543 SITE 10 AC8 38 HOH B 551 HOH B 620 SITE 1 AC9 10 LYS A 193 GLU A 196 MET B 59 THR B 60 SITE 2 AC9 10 THR B 61 GLY B 64 NA B 407 HOH B 549 SITE 3 AC9 10 HOH B 592 HOH B 600 SITE 1 AD1 6 ILE A 186 HOH A 571 ALA B 26 ASN B 29 SITE 2 AD1 6 PHE B 76 GLU B 77 SITE 1 AD2 6 SER A 267 MET A 288 GOL A 403 GLY B 268 SITE 2 AD2 6 HOH B 531 HOH B 573 SITE 1 AD3 4 GLY B 37 LEU B 38 HIS B 84 FAD B 401 SITE 1 AD4 11 ARG B 118 GLY B 154 GLY B 155 HIS B 176 SITE 2 AD4 11 ARG B 177 ARG B 178 ILE B 243 GLY B 244 SITE 3 AD4 11 HIS B 245 ARG B 293 HOH B 580 SITE 1 AD5 6 MET B 59 GOL B 402 HOH B 549 HOH B 600 SITE 2 AD5 6 HOH B 601 HOH B 624 CRYST1 79.313 153.974 58.193 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017184 0.00000