HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-DEC-16 5U6I
TITLE DISCOVERY OF MLI-2, AN ORALLY AVAILABLE AND SELECTIVE LRRK2 INHIBITOR
TITLE 2 THAT REDUCES BRAIN KINASE ACTIVITY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2,
COMPND 5 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2,
COMPND 6 MAPK 2;
COMPND 7 EC: 2.7.11.24;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;
SOURCE 3 ORGANISM_COMMON: RAT;
SOURCE 4 ORGANISM_TAXID: 10116;
SOURCE 5 GENE: MAPK1, ERK2, MAPK, PRKM1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS MLI-2, LRRK2, KINASE INHIBITOR, KINASE SELECTIVITY, PARKINSON'S
KEYWDS 2 DISEASE, TRANSFERASE, SERINE/ THREONINE-PROTEIN KINASE, MAP KINASE,
KEYWDS 3 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.D.SCOTT,D.E.DEMONG,M.J.FELL,C.MIRESCU,K.BASU,T.J.GRESHOCK,
AUTHOR 2 J.A.MORROW,L.XIAO,A.HRUZA,J.HARRIS,H.E.TISCIA,R.K.CHANG,M.W.EMBREY,
AUTHOR 3 J.A.MCCAULEY,W.LI,S.LIN,H.LIU,X.DAI,M.BAPTISTA,G.AGNIHOTRI,
AUTHOR 4 J.COLUMBUS,H.MEI,M.POIRIER,X.ZHOU,Y.LIN,Z.YIN,J.M.SANDERS,
AUTHOR 5 R.E.DROLET,J.T.KERN,M.E.KENNEDY,E.M.PARKER,A.W.STAMFORD,R.NARGUND,
AUTHOR 6 M.W.MILLER
REVDAT 3 04-OCT-23 5U6I 1 REMARK
REVDAT 2 26-APR-17 5U6I 1 JRNL REMARK
REVDAT 1 15-MAR-17 5U6I 0
JRNL AUTH J.D.SCOTT,D.E.DEMONG,T.J.GRESHOCK,K.BASU,X.DAI,J.HARRIS,
JRNL AUTH 2 A.HRUZA,S.W.LI,S.I.LIN,H.LIU,M.K.MACALA,Z.HU,H.MEI,H.ZHANG,
JRNL AUTH 3 P.WALSH,M.POIRIER,Z.C.SHI,L.XIAO,G.AGNIHOTRI,M.A.BAPTISTA,
JRNL AUTH 4 J.COLUMBUS,M.J.FELL,L.A.HYDE,R.KUVELKAR,Y.LIN,C.MIRESCU,
JRNL AUTH 5 J.A.MORROW,Z.YIN,X.ZHANG,X.ZHOU,R.K.CHANG,M.W.EMBREY,
JRNL AUTH 6 J.M.SANDERS,H.E.TISCIA,R.E.DROLET,J.T.KERN,S.M.SUR,
JRNL AUTH 7 J.J.RENGER,M.T.BILODEAU,M.E.KENNEDY,E.M.PARKER,A.W.STAMFORD,
JRNL AUTH 8 R.NARGUND,J.A.MCCAULEY,M.W.MILLER
JRNL TITL DISCOVERY OF A 3-(4-PYRIMIDINYL) INDAZOLE (MLI-2), AN ORALLY
JRNL TITL 2 AVAILABLE AND SELECTIVE LEUCINE-RICH REPEAT KINASE 2 (LRRK2)
JRNL TITL 3 INHIBITOR THAT REDUCES BRAIN KINASE ACTIVITY.
JRNL REF J. MED. CHEM. V. 60 2983 2017
JRNL REFN ISSN 1520-4804
JRNL PMID 28245354
JRNL DOI 10.1021/ACS.JMEDCHEM.7B00045
REMARK 2
REMARK 2 RESOLUTION. 1.69 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.04
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 45301
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.169
REMARK 3 R VALUE (WORKING SET) : 0.168
REMARK 3 FREE R VALUE : 0.186
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010
REMARK 3 FREE R VALUE TEST SET COUNT : 2270
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.73
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.27
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2944
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1860
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2813
REMARK 3 BIN R VALUE (WORKING SET) : 0.1830
REMARK 3 BIN FREE R VALUE : 0.2320
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.45
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2768
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 45
REMARK 3 SOLVENT ATOMS : 252
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 28.40
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.61
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.88820
REMARK 3 B22 (A**2) : 1.05020
REMARK 3 B33 (A**2) : 0.83800
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.090
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.084
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.107
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.082
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 5699 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 10305 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1260 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 74 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 840 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 5699 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 368 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 6345 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.98
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.49
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.88
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 52.3791 19.4135 19.2162
REMARK 3 T TENSOR
REMARK 3 T11: -0.0533 T22: -0.0624
REMARK 3 T33: -0.0598 T12: -0.0006
REMARK 3 T13: -0.0045 T23: 0.0146
REMARK 3 L TENSOR
REMARK 3 L11: 0.7812 L22: 0.8227
REMARK 3 L33: 0.9429 L12: -0.3067
REMARK 3 L13: -0.3906 L23: 0.1152
REMARK 3 S TENSOR
REMARK 3 S11: 0.0063 S12: 0.0852 S13: -0.0518
REMARK 3 S21: -0.0633 S22: -0.0351 S23: 0.0857
REMARK 3 S31: -0.0114 S32: -0.0435 S33: 0.0288
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5U6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-16.
REMARK 100 THE DEPOSITION ID IS D_1000225406.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.4
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION DECEMBER 6 2010
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45409
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690
REMARK 200 RESOLUTION RANGE LOW (A) : 17.040
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.400
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.70
REMARK 200 R MERGE FOR SHELL (I) : 0.62500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 1ERK
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.75
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PH 6.4, 2.0M AMMONIUM
REMARK 280 SULFATE, 5% PEG 400, 0.5% DMSO, 1% GLYEROL, 0.0005M OLOMOUCINE,
REMARK 280 18 DAY SOAK WITH NEW COMPOUND AT 500 MICROMOLAR CONCENTRATION,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.08900
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.70800
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.08900
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.70800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -7
REMARK 465 ALA A -6
REMARK 465 HIS A -5
REMARK 465 HIS A -4
REMARK 465 HIS A -3
REMARK 465 HIS A -2
REMARK 465 HIS A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 ALA A 7
REMARK 465 GLY A 8
REMARK 465 PRO A 9
REMARK 465 GLU A 10
REMARK 465 MET A 11
REMARK 465 VAL A 12
REMARK 465 ARG A 13
REMARK 465 GLY A 14
REMARK 465 GLN A 15
REMARK 465 TYR A 34
REMARK 465 TYR A 356
REMARK 465 ARG A 357
REMARK 465 SER A 358
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 MET A 291 SD MET A 291 CE -0.419
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 147 41.34 -148.03
REMARK 500 ASP A 165 80.64 68.74
REMARK 500 ASN A 199 13.92 -163.00
REMARK 500 ILE A 254 -63.94 71.84
REMARK 500 LEU A 292 44.37 -96.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 81Y A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405
DBREF 5U6I A 1 358 UNP P63086 MK01_RAT 1 358
SEQADV 5U6I MET A -7 UNP P63086 INITIATING METHIONINE
SEQADV 5U6I ALA A -6 UNP P63086 EXPRESSION TAG
SEQADV 5U6I HIS A -5 UNP P63086 EXPRESSION TAG
SEQADV 5U6I HIS A -4 UNP P63086 EXPRESSION TAG
SEQADV 5U6I HIS A -3 UNP P63086 EXPRESSION TAG
SEQADV 5U6I HIS A -2 UNP P63086 EXPRESSION TAG
SEQADV 5U6I HIS A -1 UNP P63086 EXPRESSION TAG
SEQADV 5U6I HIS A 0 UNP P63086 EXPRESSION TAG
SEQRES 1 A 366 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ALA ALA ALA
SEQRES 2 A 366 ALA ALA GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP
SEQRES 3 A 366 VAL GLY PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU
SEQRES 4 A 366 GLY ALA TYR GLY MET VAL CYS SER ALA TYR ASP ASN LEU
SEQRES 5 A 366 ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE
SEQRES 6 A 366 GLU HIS GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE
SEQRES 7 A 366 LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY
SEQRES 8 A 366 ILE ASN ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET
SEQRES 9 A 366 LYS ASP VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP
SEQRES 10 A 366 LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP
SEQRES 11 A 366 HIS ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU
SEQRES 12 A 366 LYS TYR ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU
SEQRES 13 A 366 LYS PRO SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU
SEQRES 14 A 366 LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO
SEQRES 15 A 366 ASP HIS ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA
SEQRES 16 A 366 THR ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER
SEQRES 17 A 366 LYS GLY TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY
SEQRES 18 A 366 CYS ILE LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE
SEQRES 19 A 366 PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU
SEQRES 20 A 366 GLY ILE LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS
SEQRES 21 A 366 ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU
SEQRES 22 A 366 PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO
SEQRES 23 A 366 ASN ALA ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET
SEQRES 24 A 366 LEU THR PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN
SEQRES 25 A 366 ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO
SEQRES 26 A 366 SER ASP GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP
SEQRES 27 A 366 MET GLU LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU
SEQRES 28 A 366 LEU ILE PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR
SEQRES 29 A 366 ARG SER
HET 81Y A 401 47
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET SO4 A 405 5
HETNAM 81Y 3-[2-(MORPHOLIN-4-YL)PYRIDIN-4-YL]-5-[(PROPAN-2-YL)
HETNAM 2 81Y OXY]-1H-INDAZOLE
HETNAM SO4 SULFATE ION
HETSYN 81Y MLI-2
FORMUL 2 81Y C19 H22 N4 O2
FORMUL 3 SO4 4(O4 S 2-)
FORMUL 7 HOH *252(H2 O)
HELIX 1 AA1 HIS A 59 PHE A 76 1 18
HELIX 2 AA2 LEU A 110 GLN A 117 1 8
HELIX 3 AA3 SER A 120 ALA A 141 1 22
HELIX 4 AA4 LYS A 149 SER A 151 5 3
HELIX 5 AA5 ASP A 173 ASP A 177 5 5
HELIX 6 AA6 THR A 188 ARG A 192 5 5
HELIX 7 AA7 ALA A 193 ASN A 199 1 7
HELIX 8 AA8 LYS A 205 ASN A 222 1 18
HELIX 9 AA9 HIS A 230 GLY A 243 1 14
HELIX 10 AB1 SER A 246 CYS A 252 1 7
HELIX 11 AB2 ASN A 255 LEU A 265 1 11
HELIX 12 AB3 PRO A 272 PHE A 277 1 6
HELIX 13 AB4 ASP A 281 LEU A 292 1 12
HELIX 14 AB5 GLU A 301 ALA A 307 1 7
HELIX 15 AB6 HIS A 308 GLU A 312 5 5
HELIX 16 AB7 ASP A 316 GLU A 320 5 5
HELIX 17 AB8 PRO A 337 ALA A 350 1 14
HELIX 18 AB9 ARG A 351 GLN A 353 5 3
SHEET 1 AA1 5 TYR A 23 GLU A 31 0
SHEET 2 AA1 5 MET A 36 ASP A 42 -1 O TYR A 41 N THR A 24
SHEET 3 AA1 5 VAL A 47 ILE A 54 -1 O VAL A 47 N ASP A 42
SHEET 4 AA1 5 VAL A 99 ASP A 104 -1 O VAL A 99 N ILE A 54
SHEET 5 AA1 5 ASP A 86 ILE A 88 -1 N ASP A 86 O VAL A 102
SHEET 1 AA2 3 THR A 108 ASP A 109 0
SHEET 2 AA2 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108
SHEET 3 AA2 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154
SHEET 1 AA3 2 VAL A 143 LEU A 144 0
SHEET 2 AA3 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144
CISPEP 1 GLY A 20 PRO A 21 0 3.52
SITE 1 AC1 11 ALA A 50 GLN A 103 ASP A 104 LEU A 105
SITE 2 AC1 11 MET A 106 GLU A 107 THR A 108 LYS A 112
SITE 3 AC1 11 ASN A 152 LEU A 154 HOH A 635
SITE 1 AC2 7 ARG A 68 ARG A 170 VAL A 171 ASP A 330
SITE 2 AC2 7 MET A 331 HOH A 573 HOH A 596
SITE 1 AC3 7 ARG A 65 ARG A 146 ARG A 170 VAL A 186
SITE 2 AC3 7 TYR A 203 HOH A 502 HOH A 603
SITE 1 AC4 7 TYR A 185 ARG A 189 ARG A 192 TYR A 231
SITE 2 AC4 7 HOH A 569 HOH A 636 HOH A 658
SITE 1 AC5 8 ASP A 122 GLY A 180 LYS A 257 HOH A 530
SITE 2 AC5 8 HOH A 575 HOH A 638 HOH A 646 HOH A 665
CRYST1 70.178 91.416 62.541 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014249 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010939 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015990 0.00000