HEADER LYASE,METAL BINDING PROTEIN 13-DEC-16 5U82 TITLE CRYSTAL STRUCTURE OF A MERB-TRIETHYLTIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYLMERCURY LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ORGANOMERCURIAL LYASE; COMPND 5 EC: 4.99.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MERB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BACTERIAL PROTEINS, CYSTEINE, ESCHERICHIA COLI, LYASES, MERCURY, KEYWDS 2 TRIETHYLTIN, LYASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.WAHBA,M.STEVENSON,A.MANSOUR,J.SYGUSCH,D.E.WILCOX,J.G.OMICHINSKI REVDAT 5 27-APR-22 5U82 1 SPRSDE REVDAT 4 27-NOV-19 5U82 1 REMARK REVDAT 3 28-MAR-18 5U82 1 SPRSDE REVDAT 2 25-JAN-17 5U82 1 JRNL REVDAT 1 11-JAN-17 5U82 0 JRNL AUTH H.M.WAHBA,M.J.STEVENSON,A.MANSOUR,J.SYGUSCH,D.E.WILCOX, JRNL AUTH 2 J.G.OMICHINSKI JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF ORGANOTIN AND JRNL TITL 2 ORGANOLEAD COMPOUNDS BINDING TO THE ORGANOMERCURIAL LYASE JRNL TITL 3 MERB PROVIDE NEW INSIGHTS INTO ITS MECHANISM OF CARBON-METAL JRNL TITL 4 BOND CLEAVAGE. JRNL REF J. AM. CHEM. SOC. V. 139 910 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 27989130 JRNL DOI 10.1021/JACS.6B11327 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 54768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.550 REMARK 3 FREE R VALUE TEST SET COUNT : 3586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1760 - 5.4793 0.89 1929 140 0.1770 0.2161 REMARK 3 2 5.4793 - 4.3501 0.90 1994 141 0.1475 0.1835 REMARK 3 3 4.3501 - 3.8006 0.90 1989 142 0.1323 0.2026 REMARK 3 4 3.8006 - 3.4532 0.90 1970 134 0.1473 0.1760 REMARK 3 5 3.4532 - 3.2058 0.90 1982 144 0.1617 0.2039 REMARK 3 6 3.2058 - 3.0168 0.90 1996 138 0.1697 0.2245 REMARK 3 7 3.0168 - 2.8657 0.90 1948 144 0.1810 0.2442 REMARK 3 8 2.8657 - 2.7410 0.91 2006 144 0.1807 0.2254 REMARK 3 9 2.7410 - 2.6355 0.90 2003 137 0.1629 0.1977 REMARK 3 10 2.6355 - 2.5446 0.90 1952 134 0.1664 0.2345 REMARK 3 11 2.5446 - 2.4650 0.90 1985 141 0.1749 0.2322 REMARK 3 12 2.4650 - 2.3945 0.90 1980 142 0.1866 0.2454 REMARK 3 13 2.3945 - 2.3315 0.90 2026 143 0.2030 0.3307 REMARK 3 14 2.3315 - 2.2746 0.90 1898 129 0.2075 0.3043 REMARK 3 15 2.2746 - 2.2229 0.89 2010 145 0.2084 0.2890 REMARK 3 16 2.2229 - 2.1756 0.90 1985 133 0.2061 0.2675 REMARK 3 17 2.1756 - 2.1321 0.89 1964 133 0.2176 0.2652 REMARK 3 18 2.1321 - 2.0919 0.90 1951 134 0.2253 0.2575 REMARK 3 19 2.0919 - 2.0545 0.89 1997 139 0.2189 0.2812 REMARK 3 20 2.0545 - 2.0197 0.90 1907 135 0.2377 0.2660 REMARK 3 21 2.0197 - 1.9871 0.89 2035 146 0.2558 0.2692 REMARK 3 22 1.9871 - 1.9565 0.89 1940 138 0.2921 0.3439 REMARK 3 23 1.9565 - 1.9277 0.89 1879 127 0.3455 0.4167 REMARK 3 24 1.9277 - 1.9006 0.88 1977 138 0.3648 0.4316 REMARK 3 25 1.9006 - 1.8749 0.89 1978 136 0.4073 0.4283 REMARK 3 26 1.8749 - 1.8506 0.85 1901 129 0.4188 0.4203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3275 REMARK 3 ANGLE : 1.164 4463 REMARK 3 CHIRALITY : 0.058 526 REMARK 3 PLANARITY : 0.008 573 REMARK 3 DIHEDRAL : 17.817 1955 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 11.3833 -3.4400 35.5923 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.0843 REMARK 3 T33: 0.0881 T12: -0.0046 REMARK 3 T13: 0.0090 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.3606 L22: 1.0153 REMARK 3 L33: 1.3711 L12: -0.3127 REMARK 3 L13: 0.1229 L23: 0.2604 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: -0.0042 S13: -0.0345 REMARK 3 S21: 0.1146 S22: -0.0090 S23: 0.0500 REMARK 3 S31: 0.0599 S32: -0.0193 S33: -0.0152 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 1.0462 -6.8175 10.6821 REMARK 3 T TENSOR REMARK 3 T11: 0.0772 T22: 0.1649 REMARK 3 T33: 0.1367 T12: 0.0043 REMARK 3 T13: 0.0092 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2237 L22: 1.2870 REMARK 3 L33: 0.9790 L12: 0.0018 REMARK 3 L13: 0.0035 L23: -0.1566 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.0888 S13: -0.0562 REMARK 3 S21: 0.0094 S22: -0.1454 S23: 0.0619 REMARK 3 S31: -0.0049 S32: -0.0756 S33: -0.1467 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23 % POLYETHYLENE GLYCOL 2000 MME, 0.2 REMARK 280 M SODIUM ACETATE PH 5.5, 0.2 M POTASSIUM BROMIDE. BEFORE FLASH REMARK 280 FREEZING, THE SAME PRECIPITANT WAS USED EXCEPT 25% POLYETHYLENE REMARK 280 GLYCOL MME WAS USED AS A CRYO-PROTECTANT., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.46700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 209 REMARK 465 ARG A 210 REMARK 465 THR A 211 REMARK 465 PRO A 212 REMARK 465 SER B 209 REMARK 465 ARG B 210 REMARK 465 THR B 211 REMARK 465 PRO B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 67 O HOH A 405 1.21 REMARK 500 HE22 GLN B 156 O HOH B 403 1.26 REMARK 500 HE21 GLN B 59 O HOH B 411 1.36 REMARK 500 HE ARG B 201 O HOH B 409 1.41 REMARK 500 H ASP A 89 O HOH A 410 1.41 REMARK 500 HH12 ARG B 90 O HOH B 402 1.44 REMARK 500 HE ARG A 52 O HOH A 412 1.46 REMARK 500 HH22 ARG B 16 O HOH B 408 1.49 REMARK 500 OE1 GLU A 30 HZ2 LYS A 33 1.50 REMARK 500 HH11 ARG B 201 O HOH B 401 1.52 REMARK 500 HE21 GLN A 156 O HOH A 417 1.52 REMARK 500 HH21 ARG B 79 O HOH B 412 1.53 REMARK 500 HE ARG A 109 O HOH A 411 1.56 REMARK 500 OD2 ASP A 88 O HOH A 401 1.84 REMARK 500 O HOH B 563 O HOH B 572 1.84 REMARK 500 O HOH A 587 O HOH A 600 1.84 REMARK 500 O HOH B 558 O HOH B 565 1.85 REMARK 500 O HOH A 473 O HOH A 521 1.86 REMARK 500 O HOH A 518 O HOH B 533 1.90 REMARK 500 O GLY A 180 O HOH A 402 1.90 REMARK 500 O HOH A 432 O HOH A 548 1.91 REMARK 500 NH1 ARG B 201 O HOH B 401 1.92 REMARK 500 O HOH A 411 O HOH A 566 1.94 REMARK 500 OE1 GLU A 86 O HOH A 403 1.95 REMARK 500 NH1 ARG B 90 O HOH B 402 1.97 REMARK 500 NE2 GLN B 156 O HOH B 403 1.98 REMARK 500 OE1 GLU A 191 O HOH A 404 1.98 REMARK 500 NH2 ARG B 109 O HOH B 404 2.01 REMARK 500 O ALA B 21 O HOH B 405 2.02 REMARK 500 O HOH B 530 O HOH B 544 2.03 REMARK 500 NZ LYS A 67 O HOH A 405 2.04 REMARK 500 O SER B 13 O HOH B 406 2.04 REMARK 500 O HOH A 406 O HOH A 526 2.04 REMARK 500 O HOH B 533 O HOH B 580 2.05 REMARK 500 OE1 GLU B 191 O HOH B 407 2.06 REMARK 500 O ACT A 304 O HOH A 406 2.08 REMARK 500 O HOH B 572 O HOH B 579 2.08 REMARK 500 NH2 ARG B 16 O HOH B 408 2.10 REMARK 500 BR BR A 303 O HOH A 568 2.10 REMARK 500 NE ARG B 201 O HOH B 409 2.11 REMARK 500 OE2 GLU B 9 O HOH B 410 2.16 REMARK 500 O HOH A 594 O HOH A 598 2.18 REMARK 500 O HOH A 494 O HOH A 555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 88 56.58 37.63 REMARK 500 ASP A 89 11.42 59.61 REMARK 500 SER A 115 -161.00 -162.89 REMARK 500 ALA A 151 -24.07 74.47 REMARK 500 ASP B 47 50.81 38.89 REMARK 500 ASP B 88 54.50 38.84 REMARK 500 SER B 115 -162.17 -161.07 REMARK 500 ALA B 151 -3.53 74.97 REMARK 500 PHE B 158 -64.41 -128.50 REMARK 500 HIS B 178 32.11 -140.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ZN0 A 301 REMARK 610 ZN0 B 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN0 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN0 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0P RELATED DB: PDB REMARK 900 3F0P IS WILD TYPE REMARK 900 RELATED ID: 5C0U RELATED DB: PDB REMARK 900 RELATED ID: 5C17 RELATED DB: PDB REMARK 900 RELATED ID: 5C0T RELATED DB: PDB REMARK 900 RELATED ID: 5U79 RELATED DB: PDB REMARK 900 RELATED ID: 5U7A RELATED DB: PDB REMARK 900 RELATED ID: 5U7C RELATED DB: PDB REMARK 900 RELATED ID: 5U7B RELATED DB: PDB REMARK 900 RELATED ID: 5U83 RELATED DB: PDB REMARK 900 RELATED ID: 5U88 RELATED DB: PDB DBREF 5U82 A 1 212 UNP P77072 MERB_ECOLX 1 212 DBREF 5U82 B 1 212 UNP P77072 MERB_ECOLX 1 212 SEQRES 1 A 212 MET LYS LEU ALA PRO TYR ILE LEU GLU LEU LEU THR SER SEQRES 2 A 212 VAL ASN ARG THR ASN GLY THR ALA ASP LEU LEU VAL PRO SEQRES 3 A 212 LEU LEU ARG GLU LEU ALA LYS GLY ARG PRO VAL SER ARG SEQRES 4 A 212 THR THR LEU ALA GLY ILE LEU ASP TRP PRO ALA GLU ARG SEQRES 5 A 212 VAL ALA ALA VAL LEU GLU GLN ALA THR SER THR GLU TYR SEQRES 6 A 212 ASP LYS ASP GLY ASN ILE ILE GLY TYR GLY LEU THR LEU SEQRES 7 A 212 ARG GLU THR SER TYR VAL PHE GLU ILE ASP ASP ARG ARG SEQRES 8 A 212 LEU TYR ALA TRP CYS ALA LEU ASP THR LEU ILE PHE PRO SEQRES 9 A 212 ALA LEU ILE GLY ARG THR ALA ARG VAL SER SER HIS CYS SEQRES 10 A 212 ALA ALA THR GLY ALA PRO VAL SER LEU THR VAL SER PRO SEQRES 11 A 212 SER GLU ILE GLN ALA VAL GLU PRO ALA GLY MET ALA VAL SEQRES 12 A 212 SER LEU VAL LEU PRO GLN GLU ALA ALA ASP VAL ARG GLN SEQRES 13 A 212 SER PHE CYS CYS HIS VAL HIS PHE PHE ALA SER VAL PRO SEQRES 14 A 212 THR ALA GLU ASP TRP ALA SER LYS HIS GLN GLY LEU GLU SEQRES 15 A 212 GLY LEU ALA ILE VAL SER VAL HIS GLU ALA PHE GLY LEU SEQRES 16 A 212 GLY GLN GLU PHE ASN ARG HIS LEU LEU GLN THR MET SER SEQRES 17 A 212 SER ARG THR PRO SEQRES 1 B 212 MET LYS LEU ALA PRO TYR ILE LEU GLU LEU LEU THR SER SEQRES 2 B 212 VAL ASN ARG THR ASN GLY THR ALA ASP LEU LEU VAL PRO SEQRES 3 B 212 LEU LEU ARG GLU LEU ALA LYS GLY ARG PRO VAL SER ARG SEQRES 4 B 212 THR THR LEU ALA GLY ILE LEU ASP TRP PRO ALA GLU ARG SEQRES 5 B 212 VAL ALA ALA VAL LEU GLU GLN ALA THR SER THR GLU TYR SEQRES 6 B 212 ASP LYS ASP GLY ASN ILE ILE GLY TYR GLY LEU THR LEU SEQRES 7 B 212 ARG GLU THR SER TYR VAL PHE GLU ILE ASP ASP ARG ARG SEQRES 8 B 212 LEU TYR ALA TRP CYS ALA LEU ASP THR LEU ILE PHE PRO SEQRES 9 B 212 ALA LEU ILE GLY ARG THR ALA ARG VAL SER SER HIS CYS SEQRES 10 B 212 ALA ALA THR GLY ALA PRO VAL SER LEU THR VAL SER PRO SEQRES 11 B 212 SER GLU ILE GLN ALA VAL GLU PRO ALA GLY MET ALA VAL SEQRES 12 B 212 SER LEU VAL LEU PRO GLN GLU ALA ALA ASP VAL ARG GLN SEQRES 13 B 212 SER PHE CYS CYS HIS VAL HIS PHE PHE ALA SER VAL PRO SEQRES 14 B 212 THR ALA GLU ASP TRP ALA SER LYS HIS GLN GLY LEU GLU SEQRES 15 B 212 GLY LEU ALA ILE VAL SER VAL HIS GLU ALA PHE GLY LEU SEQRES 16 B 212 GLY GLN GLU PHE ASN ARG HIS LEU LEU GLN THR MET SER SEQRES 17 B 212 SER ARG THR PRO HET ZN0 A 301 15 HET BR A 302 1 HET BR A 303 1 HET ACT A 304 7 HET ZN0 B 301 15 HET ACT B 302 7 HETNAM ZN0 TRIETHYLTIN CHLORIDE HETNAM BR BROMIDE ION HETNAM ACT ACETATE ION FORMUL 3 ZN0 2(C6 H15 CL SN) FORMUL 4 BR 2(BR 1-) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 9 HOH *388(H2 O) HELIX 1 AA1 LEU A 3 ARG A 16 1 14 HELIX 2 AA2 THR A 20 ALA A 32 1 13 HELIX 3 AA3 SER A 38 ASP A 47 1 10 HELIX 4 AA4 PRO A 49 ALA A 60 1 12 HELIX 5 AA5 CYS A 96 GLY A 108 1 13 HELIX 6 AA6 ASP A 153 PHE A 158 1 6 HELIX 7 AA7 CYS A 159 VAL A 162 5 4 HELIX 8 AA8 SER A 167 SER A 176 1 10 HELIX 9 AA9 VAL A 189 THR A 206 1 18 HELIX 10 AB1 LEU B 3 ARG B 16 1 14 HELIX 11 AB2 GLY B 19 ALA B 32 1 14 HELIX 12 AB3 SER B 38 ASP B 47 1 10 HELIX 13 AB4 PRO B 49 ALA B 60 1 12 HELIX 14 AB5 CYS B 96 GLY B 108 1 13 HELIX 15 AB6 ASP B 153 PHE B 158 1 6 HELIX 16 AB7 CYS B 159 VAL B 162 5 4 HELIX 17 AB8 SER B 167 LYS B 177 1 11 HELIX 18 AB9 VAL B 189 THR B 206 1 18 SHEET 1 AA1 2 GLU A 64 TYR A 65 0 SHEET 2 AA1 2 ILE A 71 GLY A 73 -1 O GLY A 73 N GLU A 64 SHEET 1 AA2 6 LEU A 76 THR A 77 0 SHEET 2 AA2 6 ARG A 90 ALA A 94 -1 O TYR A 93 N THR A 77 SHEET 3 AA2 6 TYR A 83 ILE A 87 -1 N ILE A 87 O ARG A 90 SHEET 4 AA2 6 ALA A 111 HIS A 116 -1 O SER A 114 N VAL A 84 SHEET 5 AA2 6 PRO A 123 VAL A 128 -1 O LEU A 126 N VAL A 113 SHEET 6 AA2 6 ILE A 133 GLU A 137 -1 O GLU A 137 N SER A 125 SHEET 1 AA3 3 PHE A 164 PHE A 165 0 SHEET 2 AA3 3 ALA A 142 LEU A 145 -1 N ALA A 142 O PHE A 165 SHEET 3 AA3 3 ALA A 185 SER A 188 -1 O VAL A 187 N VAL A 143 SHEET 1 AA4 2 GLU B 64 TYR B 65 0 SHEET 2 AA4 2 ILE B 71 GLY B 73 -1 O GLY B 73 N GLU B 64 SHEET 1 AA5 6 LEU B 76 THR B 77 0 SHEET 2 AA5 6 ARG B 90 ALA B 94 -1 O TYR B 93 N THR B 77 SHEET 3 AA5 6 TYR B 83 ILE B 87 -1 N ILE B 87 O ARG B 90 SHEET 4 AA5 6 ALA B 111 HIS B 116 -1 O ARG B 112 N GLU B 86 SHEET 5 AA5 6 PRO B 123 VAL B 128 -1 O LEU B 126 N VAL B 113 SHEET 6 AA5 6 ILE B 133 GLU B 137 -1 O GLU B 137 N SER B 125 SHEET 1 AA6 3 PHE B 164 PHE B 165 0 SHEET 2 AA6 3 ALA B 142 LEU B 145 -1 N ALA B 142 O PHE B 165 SHEET 3 AA6 3 ALA B 185 SER B 188 -1 O VAL B 187 N VAL B 143 CISPEP 1 GLU A 137 PRO A 138 0 2.98 CISPEP 2 GLU B 137 PRO B 138 0 -0.59 SITE 1 AC1 7 TYR A 74 GLY A 75 ASP A 99 PHE A 158 SITE 2 AC1 7 PHE A 199 BR A 303 HOH A 409 SITE 1 AC2 3 LYS A 2 LYS B 2 PRO B 5 SITE 1 AC3 3 ZN0 A 301 HOH A 423 HOH A 568 SITE 1 AC4 6 CYS A 160 HIS A 161 HIS A 163 TRP A 174 SITE 2 AC4 6 HOH A 406 HOH A 446 SITE 1 AC5 6 TYR B 74 GLY B 75 LEU B 98 ASP B 99 SITE 2 AC5 6 PHE B 158 HOH B 576 SITE 1 AC6 6 HOH A 518 CYS B 160 HIS B 161 HIS B 163 SITE 2 AC6 6 TRP B 174 HOH B 433 CRYST1 38.572 88.934 54.575 90.00 98.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025926 0.000000 0.003771 0.00000 SCALE2 0.000000 0.011244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018516 0.00000