HEADER TRANSPORT PROTEIN 14-DEC-16 5U8C TITLE CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH GLYCINE AND NVP-AAM077 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 394-554, 663-800; COMPND 5 SYNONYM: GLUN1,GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1,N-METHYL-D- COMPND 6 ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN1, NMDAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECEPTOR, GLYCINE AND NVP-AAM077, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ROMERO-HERNANDEZ,H.FURUKAWA REVDAT 5 04-OCT-23 5U8C 1 REMARK REVDAT 4 27-NOV-19 5U8C 1 REMARK REVDAT 3 27-SEP-17 5U8C 1 REMARK REVDAT 2 07-JUN-17 5U8C 1 JRNL REMARK REVDAT 1 17-MAY-17 5U8C 0 JRNL AUTH A.ROMERO-HERNANDEZ,H.FURUKAWA JRNL TITL NOVEL MODE OF ANTAGONIST BINDING IN NMDA RECEPTORS REVEALED JRNL TITL 2 BY THE CRYSTAL STRUCTURE OF THE GLUN1-GLUN2A LIGAND-BINDING JRNL TITL 3 DOMAIN COMPLEXED TO NVP-AAM077. JRNL REF MOL. PHARMACOL. V. 92 22 2017 JRNL REFN ESSN 1521-0111 JRNL PMID 28468946 JRNL DOI 10.1124/MOL.116.107912 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 72757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2191 - 4.7338 1.00 3192 178 0.1622 0.1535 REMARK 3 2 4.7338 - 3.7578 1.00 3061 164 0.1434 0.1488 REMARK 3 3 3.7578 - 3.2829 1.00 3035 154 0.1678 0.1543 REMARK 3 4 3.2829 - 2.9828 1.00 2986 172 0.1854 0.2253 REMARK 3 5 2.9828 - 2.7690 1.00 2995 160 0.1982 0.2079 REMARK 3 6 2.7690 - 2.6058 1.00 2972 162 0.1988 0.2113 REMARK 3 7 2.6058 - 2.4753 0.99 2955 150 0.1934 0.2358 REMARK 3 8 2.4753 - 2.3675 0.99 2949 161 0.1916 0.1957 REMARK 3 9 2.3675 - 2.2764 0.99 2913 152 0.1888 0.2203 REMARK 3 10 2.2764 - 2.1978 0.98 2915 163 0.1873 0.2212 REMARK 3 11 2.1978 - 2.1291 0.97 2857 165 0.1869 0.2195 REMARK 3 12 2.1291 - 2.0682 0.96 2855 134 0.1999 0.2558 REMARK 3 13 2.0682 - 2.0138 0.95 2790 136 0.2032 0.2367 REMARK 3 14 2.0138 - 1.9647 0.93 2773 134 0.2066 0.2275 REMARK 3 15 1.9647 - 1.9200 0.94 2765 141 0.2045 0.2246 REMARK 3 16 1.9200 - 1.8791 0.92 2707 150 0.2038 0.2518 REMARK 3 17 1.8791 - 1.8415 0.92 2709 132 0.1978 0.2296 REMARK 3 18 1.8415 - 1.8068 0.93 2714 131 0.2168 0.2519 REMARK 3 19 1.8068 - 1.7745 0.90 2715 135 0.2289 0.2542 REMARK 3 20 1.7745 - 1.7444 0.89 2611 147 0.2429 0.2590 REMARK 3 21 1.7444 - 1.7163 0.85 2450 140 0.2565 0.2966 REMARK 3 22 1.7163 - 1.6899 0.78 2297 121 0.2846 0.3293 REMARK 3 23 1.6899 - 1.6650 0.71 2059 119 0.3071 0.2937 REMARK 3 24 1.6650 - 1.6416 0.64 1899 100 0.3112 0.3182 REMARK 3 25 1.6416 - 1.6194 0.56 1614 89 0.3244 0.3648 REMARK 3 26 1.6194 - 1.5984 0.44 1317 62 0.3381 0.3470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4549 REMARK 3 ANGLE : 0.930 6161 REMARK 3 CHIRALITY : 0.057 685 REMARK 3 PLANARITY : 0.006 786 REMARK 3 DIHEDRAL : 13.386 2730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.598 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% POLYETHYLENE GLYCOL MONOETHYLETHER REMARK 280 2000 (PEG2000 MME), 100MM HEPES-NAOH PH 7.0, AND 75MM NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.60900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.11350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.60900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.11350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 SER A 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 CG SD CE REMARK 470 SER A 24 OG REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 57 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 LYS A 104 CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 LYS A 217 CE NZ REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 ASP A 291 CG OD1 OD2 REMARK 470 SER B 4 OG REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 75 CD CE NZ REMARK 470 LYS B 91 CE NZ REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 225 NH2 REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 ILE B 283 CG1 CG2 CD1 REMARK 470 HIS B 285 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 286 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 404 O HOH B 495 2.03 REMARK 500 O HOH A 1105 O HOH A 1162 2.04 REMARK 500 OE2 GLU B 133 O HOH B 401 2.06 REMARK 500 O HOH B 415 O HOH B 498 2.13 REMARK 500 NZ LYS B 205 O HOH B 402 2.15 REMARK 500 NZ LYS B 256 O HOH B 403 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 4 -3.03 76.76 REMARK 500 GLN A 13 85.87 -171.25 REMARK 500 ASN A 99 43.22 37.12 REMARK 500 GLN A 144 -146.49 -159.20 REMARK 500 GLU A 243 -152.87 56.13 REMARK 500 ASP B 5 -124.47 51.21 REMARK 500 GLU B 16 89.75 -165.25 REMARK 500 VAL B 33 -168.35 -122.49 REMARK 500 ARG B 34 -132.40 54.17 REMARK 500 LYS B 75 66.65 69.26 REMARK 500 LYS B 87 -104.66 -121.89 REMARK 500 ASN B 97 -166.10 -113.29 REMARK 500 THR B 243 -152.50 -153.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 630 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 631 DISTANCE = 7.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 84J B 301 DBREF 5U8C A 2 152 UNP P35439 NMDZ1_RAT 394 544 DBREF 5U8C A 155 292 UNP P35439 NMDZ1_RAT 663 800 DBREF 5U8C B 4 286 PDB 5U8C 5U8C 4 286 SEQADV 5U8C GLY A 1 UNP P35439 EXPRESSION TAG SEQADV 5U8C GLY A 153 UNP P35439 LINKER SEQADV 5U8C THR A 154 UNP P35439 LINKER SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 283 SER ASP ASP ASN HIS LEU SER ILE VAL THR LEU GLU GLU SEQRES 2 B 283 ALA PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO LEU THR SEQRES 3 B 283 GLU THR CYS VAL ARG ASN THR VAL PRO CYS ARG LYS PHE SEQRES 4 B 283 VAL LYS ILE ASN ASN SER THR ASN GLU GLY MET ASN VAL SEQRES 5 B 283 LYS LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS SEQRES 6 B 283 LYS LEU SER ARG THR VAL LYS PHE THR TYR ASP LEU TYR SEQRES 7 B 283 LEU VAL THR ASN GLY LYS HIS GLY LYS LYS VAL ASN ASN SEQRES 8 B 283 VAL TRP ASN GLY MET ILE GLY GLU VAL VAL TYR GLN ARG SEQRES 9 B 283 ALA VAL MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU SEQRES 10 B 283 ARG SER GLU VAL VAL ASP PHE SER VAL PRO PHE VAL GLU SEQRES 11 B 283 THR GLY ILE SER VAL MET VAL SER ARG GLY THR GLN VAL SEQRES 12 B 283 THR GLY LEU SER ASP LYS LYS PHE GLN ARG PRO HIS ASP SEQRES 13 B 283 TYR SER PRO PRO PHE ARG PHE GLY THR VAL PRO ASN GLY SEQRES 14 B 283 SER THR GLU ARG ASN ILE ARG ASN ASN TYR PRO TYR MET SEQRES 15 B 283 HIS GLN TYR MET THR ARG PHE ASN GLN ARG GLY VAL GLU SEQRES 16 B 283 ASP ALA LEU VAL SER LEU LYS THR GLY LYS LEU ASP ALA SEQRES 17 B 283 PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS ALA GLY SEQRES 18 B 283 ARG ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SER GLY SEQRES 19 B 283 TYR ILE PHE ALA THR THR GLY TYR GLY ILE ALA LEU GLN SEQRES 20 B 283 LYS GLY SER PRO TRP LYS ARG GLN ILE ASP LEU ALA LEU SEQRES 21 B 283 LEU GLN PHE VAL GLY ASP GLY GLU MET GLU GLU LEU GLU SEQRES 22 B 283 THR LEU TRP LEU THR GLY ILE CYS HIS ASN HET GLY A 901 5 HET GOL A 902 6 HET 84J B 301 27 HETNAM GLY GLYCINE HETNAM GOL GLYCEROL HETNAM 84J [(R)-{[(1S)-1-(4-BROMOPHENYL)ETHYL]AMINO}(2,3- HETNAM 2 84J DIHYDROXYQUINOXALIN-5-YL)METHYL]PHOSPHONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLY C2 H5 N O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 84J C17 H17 BR N3 O5 P FORMUL 6 HOH *432(H2 O) HELIX 1 AA1 GLY A 65 ASN A 79 1 15 HELIX 2 AA2 ASN A 107 GLY A 116 1 10 HELIX 3 AA3 ASN A 128 GLN A 133 1 6 HELIX 4 AA4 ASP A 161 ASN A 166 1 6 HELIX 5 AA5 SER A 179 GLN A 188 1 10 HELIX 6 AA6 LEU A 191 GLU A 199 1 9 HELIX 7 AA7 SER A 205 ASP A 215 1 11 HELIX 8 AA8 SER A 225 LYS A 235 1 11 HELIX 9 AA9 TRP A 260 ASN A 274 1 15 HELIX 10 AB1 GLY A 275 VAL A 285 1 11 HELIX 11 AB2 SER B 4 ASP B 6 5 3 HELIX 12 AB3 GLY B 61 LYS B 75 1 15 HELIX 13 AB4 ASN B 97 TYR B 105 1 9 HELIX 14 AB5 ASN B 118 GLU B 123 1 6 HELIX 15 AB6 ASP B 151 ARG B 156 1 6 HELIX 16 AB7 PRO B 157 TYR B 160 5 4 HELIX 17 AB8 GLY B 172 TYR B 182 1 11 HELIX 18 AB9 TYR B 182 THR B 190 1 9 HELIX 19 AC1 ARG B 191 ASN B 193 5 3 HELIX 20 AC2 GLY B 196 THR B 206 1 11 HELIX 21 AC3 ALA B 216 ARG B 225 1 10 HELIX 22 AC4 GLY B 235 ILE B 239 5 5 HELIX 23 AC5 TRP B 255 ASP B 269 1 15 HELIX 24 AC6 GLY B 270 LEU B 280 1 11 SHEET 1 AA1 8 TYR A 18 PRO A 21 0 SHEET 2 AA1 8 VAL A 59 TYR A 64 -1 O TYR A 64 N TYR A 18 SHEET 3 AA1 8 VAL A 42 GLY A 46 -1 N CYS A 44 O GLN A 61 SHEET 4 AA1 8 THR A 81 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 AA1 8 ARG A 5 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 AA1 8 MET A 120 ILE A 121 1 O MET A 120 N VAL A 9 SHEET 7 AA1 8 GLY A 253 MET A 254 -1 O GLY A 253 N ILE A 121 SHEET 8 AA1 8 GLU A 136 PHE A 137 -1 N GLU A 136 O MET A 254 SHEET 1 AA2 2 GLN A 95 ARG A 97 0 SHEET 2 AA2 2 LYS A 104 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 AA3 4 TYR A 173 ALA A 174 0 SHEET 2 AA3 4 ALA A 220 ASP A 224 1 O ILE A 222 N ALA A 174 SHEET 3 AA3 4 LYS A 142 LYS A 151 -1 N LEU A 149 O PHE A 221 SHEET 4 AA3 4 LEU A 238 PHE A 250 -1 O SER A 248 N GLN A 144 SHEET 1 AA4 8 ILE B 21 ASP B 24 0 SHEET 2 AA4 8 GLY B 52 LYS B 60 -1 O LYS B 60 N ILE B 21 SHEET 3 AA4 8 VAL B 37 LYS B 44 -1 N VAL B 37 O CYS B 59 SHEET 4 AA4 8 THR B 77 LEU B 82 1 O LEU B 82 N ARG B 40 SHEET 5 AA4 8 HIS B 8 THR B 13 1 N LEU B 9 O THR B 77 SHEET 6 AA4 8 MET B 110 ALA B 111 1 O MET B 110 N VAL B 12 SHEET 7 AA4 8 ALA B 248 GLN B 250 -1 O ALA B 248 N ALA B 111 SHEET 8 AA4 8 VAL B 125 PHE B 127 -1 N ASP B 126 O LEU B 249 SHEET 1 AA5 2 LYS B 91 VAL B 92 0 SHEET 2 AA5 2 VAL B 95 TRP B 96 -1 O VAL B 95 N VAL B 92 SHEET 1 AA6 4 PHE B 166 GLY B 167 0 SHEET 2 AA6 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA6 4 VAL B 132 SER B 141 -1 N SER B 137 O TYR B 214 SHEET 4 AA6 4 LEU B 231 THR B 233 -1 O VAL B 232 N VAL B 140 SHEET 1 AA7 4 PHE B 166 GLY B 167 0 SHEET 2 AA7 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA7 4 VAL B 132 SER B 141 -1 N SER B 137 O TYR B 214 SHEET 4 AA7 4 PHE B 240 TYR B 245 -1 O PHE B 240 N ILE B 136 SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.06 SSBOND 3 CYS A 236 CYS A 290 1555 1555 2.04 SSBOND 4 CYS B 32 CYS B 58 1555 1555 2.04 SSBOND 5 CYS B 39 CYS B 59 1555 1555 2.05 SSBOND 6 CYS B 229 CYS B 284 1555 1555 2.04 CISPEP 1 GLU A 14 PRO A 15 0 6.08 CISPEP 2 ALA B 17 PRO B 18 0 2.06 CISPEP 3 SER B 161 PRO B 162 0 -4.76 SITE 1 AC1 9 PHE A 92 PRO A 124 LEU A 125 THR A 126 SITE 2 AC1 9 ARG A 131 SER A 179 SER A 180 ASP A 224 SITE 3 AC1 9 PHE A 250 SITE 1 AC2 5 SER A 168 ASP A 169 HIS A 197 LYS A 200 SITE 2 AC2 5 HOH A1151 SITE 1 AC3 15 GLU A 273 GLU B 16 HIS B 88 SER B 114 SITE 2 AC3 15 THR B 116 ARG B 121 GLY B 172 SER B 173 SITE 3 AC3 15 THR B 174 TYR B 214 ASP B 215 HOH B 411 SITE 4 AC3 15 HOH B 422 HOH B 474 HOH B 523 CRYST1 59.550 84.227 121.218 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008250 0.00000