HEADER TRANSFERASE,LYASE/DNA 14-DEC-16 5U8I TITLE DNA POLYMERASE BETA S229L CRYSTALLIZED IN PEG 400 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA POLYMERASE; COMPND 5 EC: 2.7.7.7,4.2.99.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)- COMPND 10 3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNA TEMPLATE STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'); COMPND 16 CHAIN: P; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(*GP*TP*CP*GP*G)-3'); COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: DNA DOWNSTREAM STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: DNA PRIMER STRAND, 10MER; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630; SOURCE 20 OTHER_DETAILS: DNA DOWNSTREAM STRAND, 5MER; SOURCE 21 MOL_ID: 4; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, LYASE, DNA COMPLEX, TRANSFERASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,S.DOUBLIE REVDAT 6 04-OCT-23 5U8I 1 LINK REVDAT 5 04-DEC-19 5U8I 1 REMARK REVDAT 4 16-JAN-19 5U8I 1 SOURCE REVDAT 3 20-SEP-17 5U8I 1 REMARK REVDAT 2 17-MAY-17 5U8I 1 JRNL REVDAT 1 26-APR-17 5U8I 0 JRNL AUTH B.E.ECKENROTH,J.B.TOWLE-WEICKSEL,A.A.NEMEC,D.L.MURPHY, JRNL AUTH 2 J.B.SWEASY,S.DOUBLIE JRNL TITL REMOTE MUTATIONS INDUCE FUNCTIONAL CHANGES IN ACTIVE SITE JRNL TITL 2 RESIDUES OF HUMAN DNA POLYMERASE BETA. JRNL REF BIOCHEMISTRY V. 56 2363 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28402631 JRNL DOI 10.1021/ACS.BIOCHEM.6B01287 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 28206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7306 - 6.6204 0.99 1401 198 0.1513 0.1862 REMARK 3 2 6.6204 - 5.2594 1.00 1472 157 0.1684 0.1807 REMARK 3 3 5.2594 - 4.5959 1.00 1455 144 0.1406 0.1725 REMARK 3 4 4.5959 - 4.1763 1.00 1412 148 0.1393 0.1949 REMARK 3 5 4.1763 - 3.8772 1.00 1482 160 0.1474 0.1827 REMARK 3 6 3.8772 - 3.6488 1.00 1433 190 0.1732 0.2392 REMARK 3 7 3.6488 - 3.4662 0.99 1470 155 0.1763 0.1863 REMARK 3 8 3.4662 - 3.3154 0.98 1426 121 0.1974 0.2436 REMARK 3 9 3.3154 - 3.1879 0.97 1380 171 0.1947 0.2365 REMARK 3 10 3.1879 - 3.0779 0.96 1407 173 0.2101 0.3265 REMARK 3 11 3.0779 - 2.9817 0.93 1329 147 0.2255 0.2801 REMARK 3 12 2.9817 - 2.8965 0.89 1301 122 0.2382 0.3074 REMARK 3 13 2.8965 - 2.8203 0.82 1239 100 0.2256 0.2660 REMARK 3 14 2.8203 - 2.7515 0.79 1150 138 0.2317 0.3349 REMARK 3 15 2.7515 - 2.6890 0.78 1101 157 0.2327 0.3193 REMARK 3 16 2.6890 - 2.6318 0.72 1048 120 0.2401 0.2787 REMARK 3 17 2.6318 - 2.5791 0.72 1028 102 0.2299 0.3062 REMARK 3 18 2.5791 - 2.5305 0.68 1002 116 0.2222 0.2828 REMARK 3 19 2.5305 - 2.4853 0.68 972 111 0.2210 0.2612 REMARK 3 20 2.4853 - 2.4432 0.59 875 93 0.2264 0.3323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3203 REMARK 3 ANGLE : 0.435 4455 REMARK 3 CHIRALITY : 0.019 502 REMARK 3 PLANARITY : 0.002 466 REMARK 3 DIHEDRAL : 17.435 1223 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3137 -4.2892 9.2174 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.1585 REMARK 3 T33: 0.1668 T12: 0.0201 REMARK 3 T13: 0.0208 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.8746 L22: 1.4423 REMARK 3 L33: 1.5255 L12: 0.0392 REMARK 3 L13: -0.2784 L23: 0.3997 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0544 S13: -0.1017 REMARK 3 S21: 0.0628 S22: -0.0132 S23: -0.1636 REMARK 3 S31: 0.2560 S32: -0.1761 S33: 0.0331 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0019 9.9140 28.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.2141 REMARK 3 T33: 0.1398 T12: -0.0077 REMARK 3 T13: 0.0123 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.1351 L22: 1.2475 REMARK 3 L33: 1.6967 L12: 0.1071 REMARK 3 L13: -0.6200 L23: 0.1950 REMARK 3 S TENSOR REMARK 3 S11: 0.1776 S12: -0.5176 S13: -0.0066 REMARK 3 S21: 0.2077 S22: -0.0293 S23: -0.0124 REMARK 3 S31: -0.1129 S32: 0.2242 S33: -0.0969 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5602 8.1677 18.1095 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.2865 REMARK 3 T33: 0.2442 T12: -0.0228 REMARK 3 T13: -0.0079 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.0264 L22: 1.4822 REMARK 3 L33: 1.2329 L12: 0.0693 REMARK 3 L13: -0.4263 L23: 0.1434 REMARK 3 S TENSOR REMARK 3 S11: 0.2151 S12: 0.1615 S13: 0.0650 REMARK 3 S21: -0.1596 S22: -0.1297 S23: 0.1662 REMARK 3 S31: 0.0951 S32: -0.3427 S33: -0.0596 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7398 13.9557 -3.2239 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.2823 REMARK 3 T33: 0.2051 T12: 0.0916 REMARK 3 T13: 0.0462 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 3.2509 L22: 2.9054 REMARK 3 L33: 3.3197 L12: -0.9892 REMARK 3 L13: -1.8234 L23: 0.0487 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.1919 S13: 0.3098 REMARK 3 S21: 0.0290 S22: 0.0389 S23: -0.2183 REMARK 3 S31: -0.0634 S32: 0.4207 S33: 0.0487 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9302 24.4476 15.0174 REMARK 3 T TENSOR REMARK 3 T11: 0.3660 T22: 0.0792 REMARK 3 T33: 0.3519 T12: -0.0791 REMARK 3 T13: 0.0148 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.5178 L22: 0.7658 REMARK 3 L33: 1.3422 L12: -0.0518 REMARK 3 L13: 0.0274 L23: 0.7672 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.2114 S13: 0.3401 REMARK 3 S21: 0.0283 S22: -0.1865 S23: -0.0991 REMARK 3 S31: -0.1831 S32: -0.0933 S33: 0.0482 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4738 25.7953 15.9245 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.1710 REMARK 3 T33: 0.2375 T12: -0.0753 REMARK 3 T13: 0.0365 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.6716 L22: 2.0450 REMARK 3 L33: 1.0838 L12: -0.1347 REMARK 3 L13: -0.1143 L23: 0.3367 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.0176 S13: 0.1013 REMARK 3 S21: -0.4698 S22: -0.3699 S23: 0.0109 REMARK 3 S31: -0.1905 S32: -0.1793 S33: 0.1254 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1506 6.2913 -4.3684 REMARK 3 T TENSOR REMARK 3 T11: 0.4440 T22: 0.1278 REMARK 3 T33: 0.0137 T12: 0.0058 REMARK 3 T13: 0.1126 T23: 0.2288 REMARK 3 L TENSOR REMARK 3 L11: 0.6345 L22: 1.9409 REMARK 3 L33: 1.6202 L12: -0.2025 REMARK 3 L13: -0.0736 L23: -1.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.2811 S12: 0.3320 S13: 0.1564 REMARK 3 S21: -0.3550 S22: 0.1705 S23: 0.0829 REMARK 3 S31: 0.1526 S32: -0.3396 S33: 0.1718 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2529 7.9485 -5.1852 REMARK 3 T TENSOR REMARK 3 T11: 0.4805 T22: 0.6046 REMARK 3 T33: 0.3018 T12: -0.1839 REMARK 3 T13: 0.0154 T23: -0.1105 REMARK 3 L TENSOR REMARK 3 L11: 0.5652 L22: 1.6529 REMARK 3 L33: 1.4505 L12: 0.1004 REMARK 3 L13: -0.3531 L23: -0.8402 REMARK 3 S TENSOR REMARK 3 S11: -0.4518 S12: 0.6169 S13: -0.2815 REMARK 3 S21: -1.1287 S22: 0.6068 S23: -0.0902 REMARK 3 S31: 0.4854 S32: -0.2747 S33: -0.0990 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ISB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 400, 30 MM POTASSIUM SODIUM REMARK 280 TARTRATE, 1% 1,4-DIOXANE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.38100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 GLN A 207 REMARK 465 PRO A 208 REMARK 465 ASN A 245 REMARK 465 ASP A 246 REMARK 465 GLU A 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 THR A 10 OG1 CG2 REMARK 470 PHE A 25 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 48 CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 SER A 202 OG REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 220 CD CE NZ REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 GLU A 288 CD OE1 OE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 GLU A 309 CD OE1 OE2 REMARK 470 ASP A 314 OD1 OD2 REMARK 470 SER A 315 OG REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 SER A 334 OG REMARK 470 GLU A 335 CD OE1 OE2 REMARK 470 DC T 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 -72.04 -73.10 REMARK 500 PRO A 50 32.54 -80.09 REMARK 500 CYS A 178 -147.30 -91.81 REMARK 500 ASN A 294 -159.22 -118.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 89.7 REMARK 620 3 VAL A 65 O 85.0 84.9 REMARK 620 4 HOH A 537 O 92.4 79.8 164.5 REMARK 620 5 DC D 3 OP1 175.1 87.6 90.6 91.1 REMARK 620 6 HOH D 101 O 107.8 161.8 100.9 94.5 75.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 98.0 REMARK 620 3 ILE A 106 O 88.7 87.0 REMARK 620 4 HOH A 547 O 80.1 88.4 167.2 REMARK 620 5 DG P 9 OP1 162.4 97.5 100.2 92.2 REMARK 620 6 HOH P 104 O 78.4 174.0 97.7 86.3 85.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U8H RELATED DB: PDB REMARK 900 RELATED ID: 5U8G RELATED DB: PDB DBREF 5U8I A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 5U8I T 1 16 PDB 5U8I 5U8I 1 16 DBREF 5U8I P 1 10 PDB 5U8I 5U8I 1 10 DBREF 5U8I D 1 5 PDB 5U8I 5U8I 1 5 SEQADV 5U8I LEU A 229 UNP P06746 SER 229 ENGINEERED MUTATION SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU LEU LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 16 DC DC DG DA DC DA DG DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG HET NA A 401 1 HET NA A 402 1 HETNAM NA SODIUM ION FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *89(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 LYS A 48 1 17 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 GLN A 90 1 9 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLY A 118 1 12 HELIX 8 AA8 THR A 121 LYS A 127 1 7 HELIX 9 AA9 ASN A 128 LEU A 132 5 5 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 GLU A 147 1 6 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 GLY A 179 ARG A 182 5 4 HELIX 14 AB5 LEU A 210 VAL A 221 1 12 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 GLY A 290 1 16 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ASP A 256 N MET A 191 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N THR A 225 O VAL A 238 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 401 1555 1555 2.47 LINK O LEU A 62 NA NA A 401 1555 1555 2.66 LINK O VAL A 65 NA NA A 401 1555 1555 2.59 LINK O THR A 101 NA NA A 402 1555 1555 2.42 LINK O VAL A 103 NA NA A 402 1555 1555 2.43 LINK O ILE A 106 NA NA A 402 1555 1555 2.52 LINK NA NA A 401 O HOH A 537 1555 1555 2.71 LINK NA NA A 401 OP1 DC D 3 1555 1555 2.79 LINK NA NA A 401 O HOH D 101 1555 1555 2.47 LINK NA NA A 402 O HOH A 547 1555 1555 2.64 LINK NA NA A 402 OP1 DG P 9 1555 1555 2.33 LINK NA NA A 402 O HOH P 104 1555 1555 2.58 CISPEP 1 GLY A 274 SER A 275 0 1.34 SITE 1 AC1 6 LYS A 60 LEU A 62 VAL A 65 HOH A 537 SITE 2 AC1 6 DC D 3 HOH D 101 SITE 1 AC2 6 THR A 101 VAL A 103 ILE A 106 HOH A 547 SITE 2 AC2 6 DG P 9 HOH P 104 CRYST1 53.965 78.762 54.651 90.00 104.64 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018531 0.000000 0.004839 0.00000 SCALE2 0.000000 0.012696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018912 0.00000