HEADER IMMUNE SYSTEM 15-DEC-16 5U98 TITLE THE CRYSTAL STRUCTURE OF A SELF-PEPTIDE COMPLEXED TO ABACAVIR AND HLA- TITLE 2 B*57:01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 25-300; COMPND 5 SYNONYM: BW-57,MHC CLASS I ANTIGEN B*57; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B, E; COMPND 10 FRAGMENT: UNP RESIDUES 21-119; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: VAL-THR-THR-ASP-ILE-GLN-VAL-LYS-VAL; COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B, HLAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606 KEYWDS MHC, ANTIGEN PRESENTING CELL, T-CELL RECEPTOR, HUMAN LEUKOCYTE KEYWDS 2 ANTIGEN, DRUG HYPERSENSITIVITY, ABACAVIR HYPERSENSITIVITY, KEYWDS 3 REPERTOIRE-ALTERING SMALL MOLECULE, IMMUNE RESPONSE, IMMUNOGLOBULIN- KEYWDS 4 LIKE BETA-SANDWICH, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.A.OSTROV,A.W.BRACEY,Y.A.POMPEU,J.JAKONCIC,S.BUUS,A.S.BUUS, AUTHOR 2 R.J.SCHUTTE REVDAT 4 04-OCT-23 5U98 1 REMARK REVDAT 3 11-DEC-19 5U98 1 REMARK REVDAT 2 27-SEP-17 5U98 1 REMARK REVDAT 1 19-JUL-17 5U98 0 JRNL AUTH D.YERLY,Y.A.POMPEU,R.J.SCHUTTE,K.K.ERIKSSON,A.STRHYN, JRNL AUTH 2 A.W.BRACEY,S.BUUS,D.A.OSTROV JRNL TITL STRUCTURAL ELEMENTS RECOGNIZED BY ABACAVIR-INDUCED T CELLS. JRNL REF INT J MOL SCI V. 18 2017 JRNL REFN ESSN 1422-0067 JRNL PMID 28686208 JRNL DOI 10.3390/IJMS18071464 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 63913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3263 - 4.6961 0.99 5049 150 0.1518 0.1745 REMARK 3 2 4.6961 - 3.7301 1.00 5021 152 0.1332 0.1826 REMARK 3 3 3.7301 - 3.2594 1.00 5031 149 0.1550 0.1768 REMARK 3 4 3.2594 - 2.9617 0.98 4952 147 0.1715 0.2086 REMARK 3 5 2.9617 - 2.7496 0.94 4731 146 0.1856 0.2480 REMARK 3 6 2.7496 - 2.5876 0.92 4651 132 0.1946 0.2311 REMARK 3 7 2.5876 - 2.4581 0.92 4601 139 0.1946 0.2427 REMARK 3 8 2.4581 - 2.3512 0.92 4636 137 0.2062 0.2918 REMARK 3 9 2.3512 - 2.2607 0.93 4620 135 0.2009 0.2538 REMARK 3 10 2.2607 - 2.1827 0.92 4671 138 0.2048 0.2828 REMARK 3 11 2.1827 - 2.1145 0.93 4674 141 0.2108 0.2699 REMARK 3 12 2.1145 - 2.0541 0.94 4675 142 0.2132 0.2550 REMARK 3 13 2.0541 - 2.0000 0.94 4757 136 0.2279 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6498 REMARK 3 ANGLE : 1.052 8830 REMARK 3 CHIRALITY : 0.044 912 REMARK 3 PLANARITY : 0.005 1156 REMARK 3 DIHEDRAL : 14.943 2414 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000207551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9436 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.323 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.27000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3980 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3UPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACACODYLATE, 0.1MNAACETATE, 25% REMARK 280 PEG 8,000, 15% GLYCEROL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.30100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 275 REMARK 465 PRO A 276 REMARK 465 MET D 0 REMARK 465 GLY D 1 REMARK 465 GLU D 275 REMARK 465 PRO D 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 532 O HOH A 654 1.81 REMARK 500 O HOH A 489 O HOH C 102 1.86 REMARK 500 NE ARG A 151 O HOH A 401 1.89 REMARK 500 O HOH D 575 O HOH E 232 1.94 REMARK 500 O HOH A 536 O HOH A 575 1.95 REMARK 500 O GLU E 47 O HOH E 101 1.96 REMARK 500 O HOH A 639 O HOH A 680 1.97 REMARK 500 O LEU A 266 O HOH A 402 1.98 REMARK 500 OD2 ASP D 61 O HOH D 401 1.99 REMARK 500 O GLU E 74 O HOH E 102 2.00 REMARK 500 O HOH E 106 O HOH E 218 2.02 REMARK 500 O HOH E 178 O HOH E 217 2.03 REMARK 500 O HOH D 446 O HOH D 576 2.03 REMARK 500 O HOH A 602 O HOH A 603 2.04 REMARK 500 OE1 GLN B 2 O HOH B 101 2.04 REMARK 500 O HOH A 652 O HOH E 119 2.05 REMARK 500 O HOH A 403 O HOH A 641 2.06 REMARK 500 O HOH D 483 O HOH D 581 2.06 REMARK 500 O GLY A 16 O HOH A 403 2.06 REMARK 500 O HOH A 535 O HOH A 566 2.08 REMARK 500 O HOH E 151 O HOH E 212 2.08 REMARK 500 O HOH D 578 O HOH D 601 2.08 REMARK 500 O HOH D 579 O HOH D 582 2.10 REMARK 500 O HOH E 231 O HOH E 237 2.11 REMARK 500 O HOH A 595 O HOH A 658 2.11 REMARK 500 O HOH B 221 O HOH B 231 2.11 REMARK 500 O HOH B 226 O HOH B 244 2.13 REMARK 500 O HOH A 630 O HOH A 665 2.14 REMARK 500 O HOH A 581 O HOH A 594 2.14 REMARK 500 O ASP D 196 O HOH D 402 2.15 REMARK 500 OE1 GLU B 16 O HOH B 102 2.15 REMARK 500 O HOH A 640 O HOH A 660 2.17 REMARK 500 O HOH D 536 O HOH D 596 2.18 REMARK 500 OD2 ASP A 227 O HOH A 404 2.18 REMARK 500 O HOH A 412 O HOH A 635 2.19 REMARK 500 O HOH F 108 O HOH F 109 2.19 REMARK 500 O HOH E 200 O HOH E 219 2.19 REMARK 500 O THR D 225 O HOH D 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 154 NH1 ARG D 83 1554 2.13 REMARK 500 O HOH A 632 O HOH B 194 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 68.30 -159.76 REMARK 500 ASP A 29 -125.95 49.46 REMARK 500 ASP A 114 90.75 -161.18 REMARK 500 TYR A 123 -75.33 -113.33 REMARK 500 SER A 195 -170.30 -171.54 REMARK 500 TRP B 60 -0.17 75.65 REMARK 500 ARG D 14 68.72 -161.51 REMARK 500 ASP D 29 -116.50 50.51 REMARK 500 ASP D 114 90.57 -163.27 REMARK 500 TYR D 123 -76.35 -112.14 REMARK 500 SER D 131 -16.74 -143.68 REMARK 500 SER D 195 -160.09 -167.08 REMARK 500 GLN D 224 72.12 -104.28 REMARK 500 THR D 225 -78.76 -35.30 REMARK 500 ARG D 239 0.87 80.80 REMARK 500 PRO E 32 -169.86 -72.05 REMARK 500 LYS E 48 51.85 -104.08 REMARK 500 TRP E 60 -0.94 75.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1KX A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1KX D 301 DBREF 5U98 A 1 276 UNP P18465 1B57_HUMAN 25 300 DBREF 5U98 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5U98 C 1 9 PDB 5U98 5U98 1 9 DBREF 5U98 D 1 276 UNP P18465 1B57_HUMAN 25 300 DBREF 5U98 E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5U98 F 1 9 PDB 5U98 5U98 1 9 SEQADV 5U98 MET A 0 UNP P18465 INITIATING METHIONINE SEQADV 5U98 MET D 0 UNP P18465 INITIATING METHIONINE SEQRES 1 A 277 MET GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SEQRES 2 A 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 277 ASP ALA ALA SER PRO ARG MET ALA PRO ARG ALA PRO TRP SEQRES 5 A 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR SEQRES 6 A 277 ARG ASN MET LYS ALA SER ALA GLN THR TYR ARG GLU ASN SEQRES 7 A 277 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS ILE ILE GLN VAL MET TYR GLY CYS ASP VAL SEQRES 9 A 277 GLY PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER SEQRES 10 A 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 A 277 LEU SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SEQRES 12 A 277 THR GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN SEQRES 13 A 277 LEU ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU SEQRES 14 A 277 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 277 ALA ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SEQRES 16 A 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 277 ARG TRP GLU PRO SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 VAL THR THR ASP ILE GLN VAL LYS VAL SEQRES 1 D 277 MET GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SEQRES 2 D 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 D 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 D 277 ASP ALA ALA SER PRO ARG MET ALA PRO ARG ALA PRO TRP SEQRES 5 D 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR SEQRES 6 D 277 ARG ASN MET LYS ALA SER ALA GLN THR TYR ARG GLU ASN SEQRES 7 D 277 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 D 277 GLY SER HIS ILE ILE GLN VAL MET TYR GLY CYS ASP VAL SEQRES 9 D 277 GLY PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER SEQRES 10 D 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 D 277 LEU SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SEQRES 12 D 277 THR GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN SEQRES 13 D 277 LEU ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU SEQRES 14 D 277 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 D 277 ALA ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SEQRES 16 D 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 D 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 D 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 D 277 ARG PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA SEQRES 20 D 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 D 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 D 277 ARG TRP GLU PRO SEQRES 1 E 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 E 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 E 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 E 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 E 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 E 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 E 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 9 VAL THR THR ASP ILE GLN VAL LYS VAL HET 1KX A 301 21 HET 1KX D 301 21 HETNAM 1KX {(1S,4R)-4-[2-AMINO-6-(CYCLOPROPYLAMINO)-9H-PURIN-9- HETNAM 2 1KX YL]CYCLOPENT-2-EN-1-YL}METHANOL HETSYN 1KX ABACAVIR FORMUL 7 1KX 2(C14 H18 N6 O) FORMUL 9 HOH *840(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 THR A 225 THR A 228 5 4 HELIX 8 AA8 GLU A 253 GLN A 255 5 3 HELIX 9 AA9 ALA D 49 GLU D 53 5 5 HELIX 10 AB1 GLY D 56 TYR D 85 1 30 HELIX 11 AB2 ASP D 137 ALA D 150 1 14 HELIX 12 AB3 ARG D 151 GLY D 162 1 12 HELIX 13 AB4 GLY D 162 GLY D 175 1 14 HELIX 14 AB5 GLY D 175 GLN D 180 1 6 HELIX 15 AB6 GLU D 253 GLN D 255 5 3 SHEET 1 AA1 8 ALA A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O ALA A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 MET A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 ILE A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O TYR A 123 N SER A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 8 ALA D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O ALA D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 HIS D 3 MET D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 ILE D 94 VAL D 103 -1 O VAL D 97 N TYR D 9 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O LEU D 110 N ASP D 102 SHEET 7 AA8 8 LYS D 121 LEU D 126 -1 O TYR D 123 N SER D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 LYS D 186 PRO D 193 0 SHEET 2 AA9 4 GLU D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA9 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 THR D 228 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 LYS D 186 PRO D 193 0 SHEET 2 AB1 4 GLU D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AB1 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 ASP D 223 0 SHEET 2 AB2 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222 SHEET 3 AB2 4 TYR D 257 GLN D 262 -1 O THR D 258 N GLN D 218 SHEET 4 AB2 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 LYS E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB3 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 AB4 4 LYS E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 GLU E 44 ARG E 45 0 SHEET 2 AB5 4 GLU E 36 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 AB5 4 TYR E 78 ASN E 83 -1 O ARG E 81 N ASP E 38 SHEET 4 AB5 4 LYS E 91 LYS E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.07 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.03 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 2.08 CISPEP 2 HIS B 31 PRO B 32 0 0.70 CISPEP 3 TYR D 209 PRO D 210 0 -1.08 CISPEP 4 HIS E 31 PRO E 32 0 0.38 SITE 1 AC1 16 TYR A 9 TYR A 74 VAL A 97 TYR A 99 SITE 2 AC1 16 ASP A 114 GLN A 115 SER A 116 TYR A 123 SITE 3 AC1 16 ILE A 124 TRP A 147 HOH A 420 HOH A 509 SITE 4 AC1 16 THR C 3 ILE C 5 VAL C 7 VAL C 9 SITE 1 AC2 16 TYR D 9 TYR D 74 VAL D 97 TYR D 99 SITE 2 AC2 16 ASP D 114 GLN D 115 SER D 116 TYR D 123 SITE 3 AC2 16 ILE D 124 TRP D 147 HOH D 486 THR F 3 SITE 4 AC2 16 ILE F 5 VAL F 7 VAL F 9 HOH F 102 CRYST1 45.134 132.602 87.964 90.00 104.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022156 0.000000 0.005933 0.00000 SCALE2 0.000000 0.007541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011769 0.00000