HEADER PROTEIN TRANSPORT 20-DEC-16 5UAZ TITLE CRYSTAL STRUCTURE OF THE YEAST NUCLEOPORIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP53; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR PORE PROTEIN NUP53; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NUP53, YMR153W, YM8520.02; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOPORIN, NUCLEAR PORE COMPLEX, NUCLEOCYTOPLASMIC TRANSPORT, KEYWDS 2 DIMERIZATION DOMAIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.J.BLUS,G.BLOBEL REVDAT 3 04-OCT-23 5UAZ 1 REMARK REVDAT 2 20-NOV-19 5UAZ 1 REMARK REVDAT 1 27-DEC-17 5UAZ 0 JRNL AUTH B.J.BLUS,G.BLOBEL JRNL TITL CRYSTAL STRUCTURE OF THE YEAST NUCLEOPORIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2951 - 3.1845 1.00 3029 155 0.1440 0.1835 REMARK 3 2 3.1845 - 2.5277 1.00 2958 124 0.1702 0.2127 REMARK 3 3 2.5277 - 2.2082 1.00 2872 149 0.1539 0.1949 REMARK 3 4 2.2082 - 2.0063 1.00 2870 152 0.1517 0.2062 REMARK 3 5 2.0063 - 1.8625 1.00 2832 164 0.1731 0.2074 REMARK 3 6 1.8625 - 1.7527 0.99 2820 151 0.2082 0.2643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1555 REMARK 3 ANGLE : 1.250 2113 REMARK 3 CHIRALITY : 0.078 236 REMARK 3 PLANARITY : 0.009 264 REMARK 3 DIHEDRAL : 15.170 917 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -1:273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0728 12.1608 -8.7506 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1965 REMARK 3 T33: 0.1855 T12: 0.0008 REMARK 3 T13: 0.0218 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.5893 L22: 2.0598 REMARK 3 L33: 2.0427 L12: 1.8004 REMARK 3 L13: 0.7449 L23: -0.7015 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: 0.0369 S13: -0.1758 REMARK 3 S21: 0.0413 S22: -0.2547 S23: -0.2067 REMARK 3 S31: 0.0306 S32: 0.2470 S33: -0.0417 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 274:283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4166 13.8207 -14.3079 REMARK 3 T TENSOR REMARK 3 T11: 0.3442 T22: 0.3516 REMARK 3 T33: 0.3401 T12: -0.0111 REMARK 3 T13: 0.0250 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.0917 L22: 1.1459 REMARK 3 L33: 0.9504 L12: -0.4919 REMARK 3 L13: 0.6532 L23: -0.1091 REMARK 3 S TENSOR REMARK 3 S11: -0.1939 S12: 0.3683 S13: 0.4506 REMARK 3 S21: -0.4896 S22: -0.2429 S23: -0.6149 REMARK 3 S31: -0.5778 S32: 0.1105 S33: -0.0310 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 284:312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7145 9.4931 -17.7600 REMARK 3 T TENSOR REMARK 3 T11: 0.2742 T22: 0.2333 REMARK 3 T33: 0.2127 T12: 0.0704 REMARK 3 T13: 0.0236 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.1056 L22: 1.2942 REMARK 3 L33: 2.4783 L12: 1.1237 REMARK 3 L13: 0.5034 L23: 0.3838 REMARK 3 S TENSOR REMARK 3 S11: -0.1775 S12: -0.2036 S13: 0.1711 REMARK 3 S21: -0.0197 S22: 0.1929 S23: -0.0820 REMARK 3 S31: 0.3173 S32: 0.1785 S33: 0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 313:330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1341 8.3492 -4.0663 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.2309 REMARK 3 T33: 0.2104 T12: -0.0432 REMARK 3 T13: -0.0168 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.0235 L22: 0.9913 REMARK 3 L33: 1.0369 L12: 0.7244 REMARK 3 L13: 0.3217 L23: 0.4820 REMARK 3 S TENSOR REMARK 3 S11: 0.1964 S12: -0.2513 S13: -0.2396 REMARK 3 S21: 0.2681 S22: -0.2536 S23: -0.2105 REMARK 3 S31: 0.3115 S32: -0.0078 S33: -0.0718 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 331:355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6805 10.7320 -6.4174 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.2578 REMARK 3 T33: 0.2197 T12: -0.0406 REMARK 3 T13: 0.0246 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 1.3204 L22: 1.1999 REMARK 3 L33: 0.4233 L12: 0.1257 REMARK 3 L13: -0.4358 L23: -0.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: -0.2007 S13: 0.1450 REMARK 3 S21: -0.2390 S22: -0.0391 S23: 0.1007 REMARK 3 S31: -0.0899 S32: 0.0637 S33: -0.0047 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID -1:273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3937 12.1029 6.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1649 REMARK 3 T33: 0.1396 T12: -0.0232 REMARK 3 T13: -0.0129 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.4800 L22: 2.8601 REMARK 3 L33: 1.0111 L12: 0.1543 REMARK 3 L13: -1.5752 L23: 0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.1363 S12: -0.1708 S13: -0.0457 REMARK 3 S21: 0.2338 S22: 0.1163 S23: 0.0773 REMARK 3 S31: 0.0189 S32: 0.1253 S33: 0.0424 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 274:283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2499 13.7869 9.4559 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.3541 REMARK 3 T33: 0.2711 T12: -0.0037 REMARK 3 T13: 0.0379 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.0701 L22: 1.1211 REMARK 3 L33: 1.2361 L12: 0.2832 REMARK 3 L13: 0.1583 L23: 0.4582 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: -0.4646 S13: 0.2780 REMARK 3 S21: -0.0494 S22: 0.0211 S23: 0.5456 REMARK 3 S31: 0.0989 S32: -0.7488 S33: -0.0140 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 284:330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9367 12.2615 9.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.1619 REMARK 3 T33: 0.1418 T12: 0.0208 REMARK 3 T13: -0.0045 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.6842 L22: 3.4724 REMARK 3 L33: 2.8605 L12: -0.4852 REMARK 3 L13: -0.1737 L23: 0.2655 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.2211 S13: 0.0849 REMARK 3 S21: 0.1566 S22: 0.2129 S23: 0.0268 REMARK 3 S31: 0.0184 S32: -0.0170 S33: 0.0017 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 331:355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3076 14.8865 2.1192 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.2229 REMARK 3 T33: 0.2195 T12: -0.0473 REMARK 3 T13: 0.0392 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 0.7658 L22: 0.9242 REMARK 3 L33: 1.8199 L12: -0.0566 REMARK 3 L13: -1.0262 L23: -0.5541 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: -0.1620 S13: 0.0680 REMARK 3 S21: -0.0079 S22: 0.0543 S23: -0.0457 REMARK 3 S31: -0.5139 S32: 0.0075 S33: 0.0056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PHENIX RESTRAINTS LIBRARY GEOSTD + REMARK 3 MON.LIB. + CDL V1.2 REMARK 4 REMARK 4 5UAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) AND REMARK 200 MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18275 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.753 REMARK 200 RESOLUTION RANGE LOW (A) : 43.282 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 21.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3P3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (WT/VOL) PEG 3350 0.2 M AMMONIUM REMARK 280 SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.61250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.61250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.74850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.24350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.74850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.24350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.61250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.74850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.24350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.61250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.74850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.24350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 566 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 286 REMARK 465 LYS A 287 REMARK 465 LYS A 288 REMARK 465 LEU A 289 REMARK 465 ASN A 290 REMARK 465 SER A 291 REMARK 465 LYS A 292 REMARK 465 ASN A 293 REMARK 465 MET A 294 REMARK 465 SER A 295 REMARK 465 LYS A 296 REMARK 465 SER A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 THR A 301 REMARK 465 ALA A 302 REMARK 465 PHE B 286 REMARK 465 LYS B 287 REMARK 465 LYS B 288 REMARK 465 LEU B 289 REMARK 465 ASN B 290 REMARK 465 SER B 291 REMARK 465 LYS B 292 REMARK 465 ASN B 293 REMARK 465 MET B 294 REMARK 465 SER B 295 REMARK 465 LYS B 296 REMARK 465 SER B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 LEU B 300 REMARK 465 THR B 301 REMARK 465 ALA B 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 MET A 0 CG SD CE REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 ASP A 285 CG OD1 OD2 REMARK 470 ASP B 285 CG OD1 OD2 REMARK 470 GLN B 303 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG B 326 O HOH B 502 1.59 REMARK 500 OD1 ASP B 249 O HOH B 501 2.01 REMARK 500 OE1 GLN A 329 O HOH A 401 2.15 REMARK 500 O HOH A 449 O HOH A 463 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 250 NZ LYS B 284 4655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 354 97.92 -68.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 DBREF 5UAZ A 247 355 UNP Q03790 NUP53_YEAST 247 355 DBREF 5UAZ B 247 355 UNP Q03790 NUP53_YEAST 247 355 SEQADV 5UAZ SER A -1 UNP Q03790 EXPRESSION TAG SEQADV 5UAZ MET A 0 UNP Q03790 EXPRESSION TAG SEQADV 5UAZ SER B -1 UNP Q03790 EXPRESSION TAG SEQADV 5UAZ MET B 0 UNP Q03790 EXPRESSION TAG SEQRES 1 A 111 SER MET ASN TRP ASP ASP HIS ALA ILE ILE ILE PHE GLY SEQRES 2 A 111 TYR PRO GLU THR ILE ALA ASN SER ILE ILE LEU HIS PHE SEQRES 3 A 111 ALA ASN PHE GLY GLU ILE LEU GLU ASP PHE ARG VAL ILE SEQRES 4 A 111 LYS ASP PHE LYS LYS LEU ASN SER LYS ASN MET SER LYS SEQRES 5 A 111 SER PRO SER LEU THR ALA GLN LYS TYR PRO ILE TYR THR SEQRES 6 A 111 GLY ASP GLY TRP VAL LYS LEU THR TYR LYS SER GLU LEU SEQRES 7 A 111 SER LYS SER ARG ALA LEU GLN GLU ASN GLY ILE ILE MET SEQRES 8 A 111 ASN GLY THR LEU ILE GLY CYS VAL SER TYR SER PRO ALA SEQRES 9 A 111 ALA LEU LYS GLN LEU ALA SER SEQRES 1 B 111 SER MET ASN TRP ASP ASP HIS ALA ILE ILE ILE PHE GLY SEQRES 2 B 111 TYR PRO GLU THR ILE ALA ASN SER ILE ILE LEU HIS PHE SEQRES 3 B 111 ALA ASN PHE GLY GLU ILE LEU GLU ASP PHE ARG VAL ILE SEQRES 4 B 111 LYS ASP PHE LYS LYS LEU ASN SER LYS ASN MET SER LYS SEQRES 5 B 111 SER PRO SER LEU THR ALA GLN LYS TYR PRO ILE TYR THR SEQRES 6 B 111 GLY ASP GLY TRP VAL LYS LEU THR TYR LYS SER GLU LEU SEQRES 7 B 111 SER LYS SER ARG ALA LEU GLN GLU ASN GLY ILE ILE MET SEQRES 8 B 111 ASN GLY THR LEU ILE GLY CYS VAL SER TYR SER PRO ALA SEQRES 9 B 111 ALA LEU LYS GLN LEU ALA SER HET EDO B 401 10 HET EDO B 402 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *135(H2 O) HELIX 1 AA1 TRP A 248 ASP A 250 5 3 HELIX 2 AA2 PRO A 259 THR A 261 5 3 HELIX 3 AA3 ILE A 262 ASN A 272 1 11 HELIX 4 AA4 PHE A 280 LYS A 284 5 5 HELIX 5 AA5 SER A 320 GLN A 329 1 10 HELIX 6 AA6 SER A 346 LEU A 353 1 8 HELIX 7 AA7 ASN B 247 ASP B 250 5 4 HELIX 8 AA8 PRO B 259 THR B 261 5 3 HELIX 9 AA9 ILE B 262 ASN B 272 1 11 HELIX 10 AB1 SER B 320 GLN B 329 1 10 HELIX 11 AB2 SER B 346 LEU B 353 1 8 SHEET 1 AA1 5 THR A 309 GLY A 310 0 SHEET 2 AA1 5 TRP A 313 THR A 317 -1 O TRP A 313 N GLY A 310 SHEET 3 AA1 5 ALA A 252 PHE A 256 -1 N ILE A 255 O VAL A 314 SHEET 4 AA1 5 THR A 338 SER A 344 -1 O GLY A 341 N PHE A 256 SHEET 5 AA1 5 ILE A 333 MET A 335 -1 N ILE A 333 O ILE A 340 SHEET 1 AA2 4 THR B 309 GLY B 310 0 SHEET 2 AA2 4 TRP B 313 THR B 317 -1 O TRP B 313 N GLY B 310 SHEET 3 AA2 4 ALA B 252 PHE B 256 -1 N ILE B 253 O LEU B 316 SHEET 4 AA2 4 GLY B 341 SER B 344 -1 O GLY B 341 N PHE B 256 SHEET 1 AA3 2 ILE B 334 MET B 335 0 SHEET 2 AA3 2 THR B 338 LEU B 339 -1 O THR B 338 N MET B 335 SITE 1 AC1 5 HIS B 251 LYS B 319 SER B 320 GLU B 321 SITE 2 AC1 5 LEU B 322 SITE 1 AC2 3 GLY B 274 GLU B 275 LYS B 319 CRYST1 41.497 100.487 85.225 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011734 0.00000