HEADER TRANSFERASE 20-DEC-16 5UBG TITLE CATALYTIC CORE DOMAIN OF ADENOSINE TRIPHOSPHATE TITLE 2 PHOSPHORIBOSYLTRANSFERASE FROM CAMPYLOBACTER JEJUNI WITH BOUND TITLE 3 PHOSPHORIBOSYL-ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-225; COMPND 5 SYNONYM: ATP-PRTASE; COMPND 6 EC: 2.4.2.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI (STRAIN RM1221); SOURCE 3 ORGANISM_TAXID: 195099; SOURCE 4 STRAIN: RM1221; SOURCE 5 ATCC: 700819; SOURCE 6 GENE: HISG, CJE1769; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21*(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS HISTIDINE-BIOSYNTHESIS, HISG, PR-ATP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MITTELSTAEDT,W.JIAO,E.K.LIVINGSTONE,E.J.PARKER REVDAT 3 04-OCT-23 5UBG 1 LINK REVDAT 2 17-JAN-18 5UBG 1 JRNL REVDAT 1 20-DEC-17 5UBG 0 JRNL AUTH G.MITTELSTADT,W.JIAO,E.K.LIVINGSTONE,G.J.MOGGRE,A.R.NAZMI, JRNL AUTH 2 E.J.PARKER JRNL TITL A DIMERIC CATALYTIC CORE RELATES THE SHORT AND LONG FORMS OF JRNL TITL 2 ATP-PHOSPHORIBOSYLTRANSFERASE. JRNL REF BIOCHEM. J. V. 475 247 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29208762 JRNL DOI 10.1042/BCJ20170762 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.MITTELSTAEDT,G.J.MOGGRE,S.PANJIKAR,A.R.NAZMI,E.J.PARKER REMARK 1 TITL CAMPYLOBACTER JEJUNI ADENOSINE TRIPHOSPHATE REMARK 1 TITL 2 PHOSPHORIBOSYLTRANSFERASE IS AN ACTIVE HEXAMER THAT IS REMARK 1 TITL 3 ALLOSTERICALLY CONTROLLED BY THE TWISTING OF A REGULATORY REMARK 1 TITL 4 TAIL. REMARK 1 REF PROTEIN SCI. V. 25 1492 2016 REMARK 1 REFN ESSN 1469-896X REMARK 1 PMID 27191057 REMARK 1 DOI 10.1002/PRO.2948 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.5060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.33000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 2.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3586 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3521 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4858 ; 1.431 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8097 ; 0.985 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 5.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;38.145 ;24.903 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;13.292 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.947 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3982 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 754 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 2.984 ; 2.653 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1783 ; 2.980 ; 2.652 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 3.504 ; 3.972 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2231 ; 3.505 ; 3.973 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1802 ; 3.223 ; 3.077 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1790 ; 3.194 ; 3.066 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2609 ; 3.713 ; 4.445 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3972 ; 4.081 ;21.521 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3970 ; 4.082 ;21.508 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7107 ; 2.210 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 54 ;18.126 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7208 ; 8.048 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 225 B 4 225 13282 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7693 -16.7297 -16.1133 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.0189 REMARK 3 T33: 0.0193 T12: -0.0202 REMARK 3 T13: -0.0218 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.6637 L22: 0.6449 REMARK 3 L33: 0.2239 L12: 0.4249 REMARK 3 L13: -0.0472 L23: -0.1802 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.0411 S13: -0.0023 REMARK 3 S21: 0.1297 S22: -0.0954 S23: -0.0829 REMARK 3 S31: -0.0300 S32: 0.0350 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7582 -12.9853 -36.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0167 REMARK 3 T33: 0.0434 T12: 0.0079 REMARK 3 T13: -0.0352 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.2690 L22: 0.3940 REMARK 3 L33: 0.7111 L12: -0.2536 REMARK 3 L13: -0.1497 L23: -0.1519 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: 0.0213 S13: -0.0538 REMARK 3 S21: -0.0671 S22: -0.0043 S23: 0.0781 REMARK 3 S31: 0.0402 S32: -0.0256 S33: -0.0570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.959 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40502 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SINGLE CHAIN OF PDB 5UB9 REMARK 200 REMARK 200 REMARK: OCTAHEDRAL SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.0, 0.01 M REMARK 280 ZNCL2, 7-10% PEG 6000, FORMED CRYSTALS SOAKED WITH 5 MM PR-ATP REMARK 280 FOR 30-60 MIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.72900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.36400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.36400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.72900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS STATE THAT THE PROTEIN EXISTS AS DIMER WITH A REMARK 300 MOLECULAR MASS OF 50 KDA IN SOLUTION AS EVIDENCED BY SEC, AUC, AND REMARK 300 LIGHT SCATTERING EXPERIMENTS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 GLU B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 35 -117.72 -114.51 REMARK 500 LEU A 39 -42.39 -146.28 REMARK 500 SER A 172 -75.25 -118.96 REMARK 500 SER B 172 -71.92 -120.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 492 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 ND1 REMARK 620 2 HIS A 35 NE2 114.0 REMARK 620 3 GLU B 78 OE1 107.1 40.6 REMARK 620 4 GLU B 78 OE2 108.1 37.8 2.8 REMARK 620 5 GLU B 81 OE1 105.6 37.1 4.5 3.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 ASP A 56 OD2 89.0 REMARK 620 3 PRT A 302 O3G 83.6 89.4 REMARK 620 4 PRT A 302 O2B 110.4 160.1 97.1 REMARK 620 5 HOH A 423 O 103.3 92.5 172.9 78.8 REMARK 620 6 HOH A 434 O 162.2 74.2 90.5 86.9 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 NE2 REMARK 620 2 HIS B 35 NE2 128.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 35 NE2 REMARK 620 2 ASP B 100 OD2 18.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 55 OD1 REMARK 620 2 ASP B 56 OD2 86.6 REMARK 620 3 PRT B 303 O2G 87.0 82.5 REMARK 620 4 PRT B 303 O2B 116.7 155.6 104.8 REMARK 620 5 HOH B 402 O 96.6 90.7 172.2 79.8 REMARK 620 6 HOH B 451 O 159.7 73.9 85.0 83.5 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UB9 RELATED DB: PDB REMARK 900 5UB9 CONTAINS THE SAME PROTEIN WITHOUT BOUND SUBSTRATE/PRODUCT REMARK 900 RELATED ID: 5UBI RELATED DB: PDB REMARK 900 RELATED ID: 5UBH RELATED DB: PDB DBREF 5UBG A 1 225 UNP Q5HSJ4 HIS1_CAMJR 1 225 DBREF 5UBG B 1 225 UNP Q5HSJ4 HIS1_CAMJR 1 225 SEQADV 5UBG GLY A 0 UNP Q5HSJ4 EXPRESSION TAG SEQADV 5UBG GLY B 0 UNP Q5HSJ4 EXPRESSION TAG SEQRES 1 A 226 GLY MET GLN GLU ASN THR ARG LEU ARG ILE ALA ILE GLN SEQRES 2 A 226 LYS SER GLY ARG LEU SER LYS GLU SER ILE GLU LEU LEU SEQRES 3 A 226 SER GLU CYS GLY VAL LYS MET HIS ILE HIS GLU GLN SER SEQRES 4 A 226 LEU ILE ALA PHE SER THR ASN LEU PRO ILE ASP ILE LEU SEQRES 5 A 226 ARG VAL ARG ASP ASP ASP ILE PRO GLY LEU ILE PHE ASP SEQRES 6 A 226 GLY VAL VAL ASP LEU GLY ILE ILE GLY GLU ASN VAL LEU SEQRES 7 A 226 GLU GLU ASN GLU LEU GLU ARG GLN SER LEU GLY GLU ASN SEQRES 8 A 226 PRO SER TYR LYS LEU LEU LYS LYS LEU ASP PHE GLY TYR SEQRES 9 A 226 CYS ARG LEU SER LEU ALA LEU PRO GLN GLU ASN LYS PHE SEQRES 10 A 226 GLN ASN LEU LYS ASP PHE GLU GLY LEU ARG ILE ALA THR SEQRES 11 A 226 SER TYR PRO GLN LEU LEU LYS ARG PHE MET LYS GLU ASN SEQRES 12 A 226 GLY ILE ASN TYR LYS ASN CYS THR LEU THR GLY SER VAL SEQRES 13 A 226 GLU VAL ALA PRO ARG ALA ASN LEU ALA ASP ALA ILE CYS SEQRES 14 A 226 ASP LEU VAL SER SER GLY ALA THR LEU GLN ALA ASN ASN SEQRES 15 A 226 LEU LYS GLU VAL LYS VAL ILE TYR GLU SER ARG ALA CYS SEQRES 16 A 226 LEU ILE GLN LYS GLU ASN ALA LEU SER LYS GLU LYS GLN SEQRES 17 A 226 ALA LEU VAL ASP LYS ILE MET LEU ARG VAL ALA GLY VAL SEQRES 18 A 226 MET GLN ALA ARG GLU SEQRES 1 B 226 GLY MET GLN GLU ASN THR ARG LEU ARG ILE ALA ILE GLN SEQRES 2 B 226 LYS SER GLY ARG LEU SER LYS GLU SER ILE GLU LEU LEU SEQRES 3 B 226 SER GLU CYS GLY VAL LYS MET HIS ILE HIS GLU GLN SER SEQRES 4 B 226 LEU ILE ALA PHE SER THR ASN LEU PRO ILE ASP ILE LEU SEQRES 5 B 226 ARG VAL ARG ASP ASP ASP ILE PRO GLY LEU ILE PHE ASP SEQRES 6 B 226 GLY VAL VAL ASP LEU GLY ILE ILE GLY GLU ASN VAL LEU SEQRES 7 B 226 GLU GLU ASN GLU LEU GLU ARG GLN SER LEU GLY GLU ASN SEQRES 8 B 226 PRO SER TYR LYS LEU LEU LYS LYS LEU ASP PHE GLY TYR SEQRES 9 B 226 CYS ARG LEU SER LEU ALA LEU PRO GLN GLU ASN LYS PHE SEQRES 10 B 226 GLN ASN LEU LYS ASP PHE GLU GLY LEU ARG ILE ALA THR SEQRES 11 B 226 SER TYR PRO GLN LEU LEU LYS ARG PHE MET LYS GLU ASN SEQRES 12 B 226 GLY ILE ASN TYR LYS ASN CYS THR LEU THR GLY SER VAL SEQRES 13 B 226 GLU VAL ALA PRO ARG ALA ASN LEU ALA ASP ALA ILE CYS SEQRES 14 B 226 ASP LEU VAL SER SER GLY ALA THR LEU GLN ALA ASN ASN SEQRES 15 B 226 LEU LYS GLU VAL LYS VAL ILE TYR GLU SER ARG ALA CYS SEQRES 16 B 226 LEU ILE GLN LYS GLU ASN ALA LEU SER LYS GLU LYS GLN SEQRES 17 B 226 ALA LEU VAL ASP LYS ILE MET LEU ARG VAL ALA GLY VAL SEQRES 18 B 226 MET GLN ALA ARG GLU HET ZN A 301 1 HET PRT A 302 44 HET ZN A 303 1 HET ZN B 301 1 HET ZN B 302 1 HET PRT B 303 44 HET ZN B 304 1 HET CL B 305 1 HETNAM ZN ZINC ION HETNAM PRT PHOSPHORIBOSYL ATP HETNAM CL CHLORIDE ION HETSYN PRT [[(2~{R},3~{S},4~{R},5~{R})-5-[6-AZANYLIDENE-1-[(2~{R}, HETSYN 2 PRT 3~{R},4~{S},5~{R})-3,4-BIS(OXIDANYL)-5- HETSYN 3 PRT (PHOSPHONOOXYMETHYL)OXOLAN-2-YL]PURIN-9-YL]-3,4- HETSYN 4 PRT BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETSYN 5 PRT PHOSPHONO HYDROGEN PHOSPHATE FORMUL 3 ZN 5(ZN 2+) FORMUL 4 PRT 2(C15 H25 N5 O20 P4) FORMUL 10 CL CL 1- FORMUL 11 HOH *194(H2 O) HELIX 1 AA1 LEU A 17 CYS A 28 1 12 HELIX 2 AA2 ARG A 54 ASP A 56 5 3 HELIX 3 AA3 ASP A 57 ASP A 64 1 8 HELIX 4 AA4 GLU A 74 LEU A 87 1 14 HELIX 5 AA5 ASN A 118 GLU A 123 5 6 HELIX 6 AA6 TYR A 131 ASN A 142 1 12 HELIX 7 AA7 SER A 154 ALA A 158 5 5 HELIX 8 AA8 GLY A 174 ASN A 180 1 7 HELIX 9 AA9 SER A 203 ARG A 224 1 22 HELIX 10 AB1 LEU B 17 CYS B 28 1 12 HELIX 11 AB2 ARG B 54 ASP B 56 5 3 HELIX 12 AB3 ASP B 57 ASP B 64 1 8 HELIX 13 AB4 GLU B 74 LEU B 87 1 14 HELIX 14 AB5 ASN B 118 GLU B 123 5 6 HELIX 15 AB6 TYR B 131 ASN B 142 1 12 HELIX 16 AB7 SER B 154 ALA B 158 5 5 HELIX 17 AB8 GLY B 174 ASN B 180 1 7 HELIX 18 AB9 SER B 203 ARG B 224 1 22 SHEET 1 AA1 6 ILE A 40 PHE A 42 0 SHEET 2 AA1 6 ILE A 48 VAL A 53 -1 O ILE A 50 N ALA A 41 SHEET 3 AA1 6 LEU A 7 GLN A 12 1 N LEU A 7 O ASP A 49 SHEET 4 AA1 6 LEU A 69 GLY A 73 1 O LEU A 69 N ALA A 10 SHEET 5 AA1 6 ALA A 193 GLN A 197 -1 O ILE A 196 N GLY A 70 SHEET 6 AA1 6 LYS A 94 LYS A 98 -1 N LYS A 94 O GLN A 197 SHEET 1 AA2 5 LYS A 147 THR A 150 0 SHEET 2 AA2 5 ARG A 126 THR A 129 1 N ILE A 127 O LYS A 147 SHEET 3 AA2 5 ALA A 166 VAL A 171 1 O ALA A 166 N ALA A 128 SHEET 4 AA2 5 CYS A 104 PRO A 111 -1 N SER A 107 O ASP A 169 SHEET 5 AA2 5 LEU A 182 SER A 191 -1 O ILE A 188 N LEU A 106 SHEET 1 AA3 7 MET B 32 HIS B 33 0 SHEET 2 AA3 7 ILE B 40 SER B 43 -1 O PHE B 42 N HIS B 33 SHEET 3 AA3 7 ILE B 48 VAL B 53 -1 O ILE B 50 N ALA B 41 SHEET 4 AA3 7 LEU B 7 GLN B 12 1 N LEU B 7 O ASP B 49 SHEET 5 AA3 7 LEU B 69 GLY B 73 1 O LEU B 69 N ALA B 10 SHEET 6 AA3 7 ALA B 193 GLN B 197 -1 O ILE B 196 N GLY B 70 SHEET 7 AA3 7 LYS B 94 LYS B 98 -1 N LYS B 94 O GLN B 197 SHEET 1 AA4 5 LYS B 147 THR B 150 0 SHEET 2 AA4 5 ARG B 126 THR B 129 1 N ILE B 127 O LYS B 147 SHEET 3 AA4 5 ALA B 166 VAL B 171 1 O ALA B 166 N ALA B 128 SHEET 4 AA4 5 CYS B 104 PRO B 111 -1 N SER B 107 O ASP B 169 SHEET 5 AA4 5 LEU B 182 SER B 191 -1 O ILE B 188 N LEU B 106 LINK ND1 HIS A 33 ZN ZN A 301 1555 1555 2.07 LINK NE2 HIS A 35 ZN ZN A 301 1555 1555 2.14 LINK OD1 ASP A 55 ZN ZN A 303 1555 1555 2.21 LINK OD2 ASP A 56 ZN ZN A 303 1555 1555 2.19 LINK ZN ZN A 301 OE1 GLU B 78 3554 1555 2.32 LINK ZN ZN A 301 OE2 GLU B 78 3554 1555 2.25 LINK ZN ZN A 301 OE1 GLU B 81 3554 1555 1.94 LINK O3G PRT A 302 ZN ZN A 303 1555 1555 2.06 LINK O2B PRT A 302 ZN ZN A 303 1555 1555 2.13 LINK ZN ZN A 303 O HOH A 423 1555 1555 2.29 LINK ZN ZN A 303 O HOH A 434 1555 1555 2.29 LINK NE2 HIS B 33 ZN ZN B 301 1555 1555 2.30 LINK NE2AHIS B 35 ZN ZN B 301 1555 1555 2.12 LINK NE2BHIS B 35 ZN ZN B 302 1555 1555 2.57 LINK OD1 ASP B 55 ZN ZN B 304 1555 1555 2.27 LINK OD2 ASP B 56 ZN ZN B 304 1555 1555 2.27 LINK OD2 ASP B 100 ZN ZN B 302 1555 4444 2.11 LINK O2G PRT B 303 ZN ZN B 304 1555 1555 2.03 LINK O2B PRT B 303 ZN ZN B 304 1555 1555 2.26 LINK ZN ZN B 304 O HOH B 402 1555 1555 2.39 LINK ZN ZN B 304 O HOH B 451 1555 1555 2.43 SITE 1 AC1 4 HIS A 33 HIS A 35 GLU B 78 GLU B 81 SITE 1 AC2 29 GLN A 12 GLY A 15 ARG A 16 ARG A 54 SITE 2 AC2 29 ASP A 55 ASP A 56 ASN A 75 VAL A 76 SITE 3 AC2 29 GLY A 102 TYR A 103 CYS A 104 ASP A 169 SITE 4 AC2 29 LEU A 170 SER A 172 SER A 173 GLY A 174 SITE 5 AC2 29 ALA A 175 THR A 176 ZN A 303 HOH A 401 SITE 6 AC2 29 HOH A 406 HOH A 414 HOH A 423 HOH A 431 SITE 7 AC2 29 HOH A 434 HOH A 435 HOH A 455 HOH A 470 SITE 8 AC2 29 HOH A 471 SITE 1 AC3 5 ASP A 55 ASP A 56 PRT A 302 HOH A 423 SITE 2 AC3 5 HOH A 434 SITE 1 AC4 4 HIS B 33 HIS B 35 TYR B 103 CL B 305 SITE 1 AC5 3 HIS B 35 ASP B 100 GLU B 225 SITE 1 AC6 26 GLN B 12 GLY B 15 ARG B 16 ARG B 54 SITE 2 AC6 26 ASP B 55 ASP B 56 GLY B 73 ASN B 75 SITE 3 AC6 26 VAL B 76 GLY B 102 TYR B 103 CYS B 104 SITE 4 AC6 26 LEU B 170 VAL B 171 SER B 172 SER B 173 SITE 5 AC6 26 GLY B 174 ALA B 175 THR B 176 ZN B 304 SITE 6 AC6 26 HOH B 402 HOH B 403 HOH B 411 HOH B 421 SITE 7 AC6 26 HOH B 451 HOH B 457 SITE 1 AC7 5 ASP B 55 ASP B 56 PRT B 303 HOH B 402 SITE 2 AC7 5 HOH B 451 SITE 1 AC8 2 TYR B 103 ZN B 301 CRYST1 67.458 80.460 92.728 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010784 0.00000