HEADER TRANSFERASE 20-DEC-16 5UBI TITLE CATALYTIC CORE DOMAIN OF ADENOSINE TRIPHOSPHATE TITLE 2 PHOSPHORIBOSYLTRANSFERASE FROM CAMPYLOBACTER JEJUNI WITH BOUND PRPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP-PRTASE; COMPND 5 EC: 2.4.2.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI (STRAIN RM1221); SOURCE 3 ORGANISM_TAXID: 195099; SOURCE 4 STRAIN: RM1221; SOURCE 5 ATCC: 700819; SOURCE 6 GENE: HISG, CJE1769; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21*(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS HISTIDINE-BIOSYNTHESIS, HISG, PRPP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MITTELSTAEDT,W.JIAO,E.K.LIVINGSTONE,E.J.PARKER REVDAT 4 04-OCT-23 5UBI 1 HETSYN REVDAT 3 29-JUL-20 5UBI 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 17-JAN-18 5UBI 1 JRNL REVDAT 1 20-DEC-17 5UBI 0 JRNL AUTH G.MITTELSTADT,W.JIAO,E.K.LIVINGSTONE,G.J.MOGGRE,A.R.NAZMI, JRNL AUTH 2 E.J.PARKER JRNL TITL A DIMERIC CATALYTIC CORE RELATES THE SHORT AND LONG FORMS OF JRNL TITL 2 ATP-PHOSPHORIBOSYLTRANSFERASE. JRNL REF BIOCHEM. J. V. 475 247 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29208762 JRNL DOI 10.1042/BCJ20170762 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.MITTELSTAEDT,G.J.MOGGRE,S.PANJIKAR,A.R.NAZMI,E.J.PARKER REMARK 1 TITL CAMPYLOBACTER JEJUNI ADENOSINE TRIPHOSPHATE REMARK 1 TITL 2 PHOSPHORIBOSYLTRANSFERASE IS AN ACTIVE HEXAMER THAT IS REMARK 1 TITL 3 ALLOSTERICALLY CONTROLLED BY THE TWISTING OF A REGULATORY REMARK 1 TITL 4 TAIL. REMARK 1 REF PROTEIN SCI. V. 25 1492 2016 REMARK 1 REFN ESSN 1469-896X REMARK 1 PMID 27191057 REMARK 1 DOI 10.1002/PRO.2948 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.4520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3351 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.10000 REMARK 3 B22 (A**2) : 3.62000 REMARK 3 B33 (A**2) : 13.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.324 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3509 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3417 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4751 ; 1.504 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7850 ; 0.983 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 5.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;38.314 ;25.067 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 634 ;13.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3969 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 736 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1791 ; 3.784 ; 2.466 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1787 ; 3.714 ; 2.460 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 4.332 ; 3.681 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2243 ; 4.332 ; 3.682 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 4.495 ; 2.787 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1718 ; 4.492 ; 2.787 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2510 ; 5.232 ; 4.082 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3992 ; 5.448 ;20.333 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3993 ; 5.449 ;20.338 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6926 ; 3.787 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 66 ;33.130 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7036 ;17.781 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 220 B 4 220 12410 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1672 -15.1900 16.5079 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.0330 REMARK 3 T33: 0.0083 T12: 0.0043 REMARK 3 T13: -0.0125 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.2357 L22: 0.3010 REMARK 3 L33: 0.0342 L12: -0.0809 REMARK 3 L13: -0.0196 L23: 0.0187 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.0340 S13: 0.0040 REMARK 3 S21: -0.0745 S22: -0.0064 S23: 0.0182 REMARK 3 S31: -0.0164 S32: -0.0139 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2326 -12.2799 35.5662 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.0137 REMARK 3 T33: 0.0266 T12: 0.0016 REMARK 3 T13: 0.0018 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.1532 L22: 0.2677 REMARK 3 L33: 0.2346 L12: 0.0614 REMARK 3 L13: -0.0408 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0125 S13: -0.0366 REMARK 3 S21: -0.0047 S22: -0.0064 S23: -0.0390 REMARK 3 S31: 0.0136 S32: -0.0061 S33: 0.0130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.959 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SINGLE CHAIN OF 5UB9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.0, 0.01 M REMARK 280 ZNCL2, 7-10% PEG 6000 FORMED CRYSTALS WERE SOAKED WITH 3 MM PRPP REMARK 280 FOR 30-60 MIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.00150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.55950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.55950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.00150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS STATE THAT THE PROTEIN EXISTS AS DIMER OF 50 REMARK 300 KDA IN SOLUTION AS EVIDENCED BY SEC, AUC, AND LIGHT SCATTERING REMARK 300 EXPERIMENTS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 222 REMARK 465 ALA A 223 REMARK 465 ARG A 224 REMARK 465 GLU A 225 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 GLU B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 220 CG1 CG2 REMARK 470 THR B 5 OG1 CG2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 SER B 172 OG REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 ASN B 181 CG OD1 ND2 REMARK 470 GLN B 222 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 6 OD1 ASP B 49 1.62 REMARK 500 O HOH A 432 O HOH A 446 1.85 REMARK 500 OD1 ASP A 56 O HOH A 401 2.05 REMARK 500 NE ARG B 16 O2A PRP B 305 2.09 REMARK 500 O HOH B 511 O HOH B 514 2.13 REMARK 500 OD2 ASP A 56 C ACT A 304 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 141 OE2 GLU B 205 2454 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 8 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 36 -5.22 75.08 REMARK 500 LEU A 39 -47.91 -148.16 REMARK 500 SER A 172 -72.66 -116.96 REMARK 500 SER B 172 -79.11 -107.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 ND1 REMARK 620 2 HIS A 35 NE2 117.7 REMARK 620 3 GLU B 78 OE2 110.4 29.2 REMARK 620 4 GLU B 81 OE2 108.1 28.1 3.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 ND1 REMARK 620 2 HIS A 35 NE2 103.7 REMARK 620 3 HOH A 487 O 111.5 117.6 REMARK 620 4 GLU B 78 OE1 100.1 23.7 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 ASP A 56 OD2 74.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP A 306 O2A REMARK 620 2 PRP A 306 O1B 56.6 REMARK 620 3 HOH A 414 O 65.6 92.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 NE2 REMARK 620 2 HIS B 35 NE2 97.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 35 NE2 REMARK 620 2 ASP B 100 OD2 40.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 55 OD1 REMARK 620 2 ASP B 56 OD2 79.8 REMARK 620 3 HOH B 496 O 93.4 113.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP B 305 O1A REMARK 620 2 PRP B 305 O3B 83.8 REMARK 620 3 HOH B 480 O 125.8 87.8 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UB9 RELATED DB: PDB REMARK 900 5UB9 CONTAINS THE SAME PROTEIN WITHOUT SUBSTRATE/PRODUCT BOUND REMARK 900 RELATED ID: 5UBG RELATED DB: PDB REMARK 900 RELATED ID: 5UBH RELATED DB: PDB DBREF 5UBI A 1 225 UNP Q5HSJ4 HIS1_CAMJR 1 225 DBREF 5UBI B 1 225 UNP Q5HSJ4 HIS1_CAMJR 1 225 SEQADV 5UBI GLY A 0 UNP Q5HSJ4 EXPRESSION TAG SEQADV 5UBI GLY B 0 UNP Q5HSJ4 EXPRESSION TAG SEQRES 1 A 226 GLY MET GLN GLU ASN THR ARG LEU ARG ILE ALA ILE GLN SEQRES 2 A 226 LYS SER GLY ARG LEU SER LYS GLU SER ILE GLU LEU LEU SEQRES 3 A 226 SER GLU CYS GLY VAL LYS MET HIS ILE HIS GLU GLN SER SEQRES 4 A 226 LEU ILE ALA PHE SER THR ASN LEU PRO ILE ASP ILE LEU SEQRES 5 A 226 ARG VAL ARG ASP ASP ASP ILE PRO GLY LEU ILE PHE ASP SEQRES 6 A 226 GLY VAL VAL ASP LEU GLY ILE ILE GLY GLU ASN VAL LEU SEQRES 7 A 226 GLU GLU ASN GLU LEU GLU ARG GLN SER LEU GLY GLU ASN SEQRES 8 A 226 PRO SER TYR LYS LEU LEU LYS LYS LEU ASP PHE GLY TYR SEQRES 9 A 226 CYS ARG LEU SER LEU ALA LEU PRO GLN GLU ASN LYS PHE SEQRES 10 A 226 GLN ASN LEU LYS ASP PHE GLU GLY LEU ARG ILE ALA THR SEQRES 11 A 226 SER TYR PRO GLN LEU LEU LYS ARG PHE MET LYS GLU ASN SEQRES 12 A 226 GLY ILE ASN TYR LYS ASN CYS THR LEU THR GLY SER VAL SEQRES 13 A 226 GLU VAL ALA PRO ARG ALA ASN LEU ALA ASP ALA ILE CYS SEQRES 14 A 226 ASP LEU VAL SER SER GLY ALA THR LEU GLN ALA ASN ASN SEQRES 15 A 226 LEU LYS GLU VAL LYS VAL ILE TYR GLU SER ARG ALA CYS SEQRES 16 A 226 LEU ILE GLN LYS GLU ASN ALA LEU SER LYS GLU LYS GLN SEQRES 17 A 226 ALA LEU VAL ASP LYS ILE MET LEU ARG VAL ALA GLY VAL SEQRES 18 A 226 MET GLN ALA ARG GLU SEQRES 1 B 226 GLY MET GLN GLU ASN THR ARG LEU ARG ILE ALA ILE GLN SEQRES 2 B 226 LYS SER GLY ARG LEU SER LYS GLU SER ILE GLU LEU LEU SEQRES 3 B 226 SER GLU CYS GLY VAL LYS MET HIS ILE HIS GLU GLN SER SEQRES 4 B 226 LEU ILE ALA PHE SER THR ASN LEU PRO ILE ASP ILE LEU SEQRES 5 B 226 ARG VAL ARG ASP ASP ASP ILE PRO GLY LEU ILE PHE ASP SEQRES 6 B 226 GLY VAL VAL ASP LEU GLY ILE ILE GLY GLU ASN VAL LEU SEQRES 7 B 226 GLU GLU ASN GLU LEU GLU ARG GLN SER LEU GLY GLU ASN SEQRES 8 B 226 PRO SER TYR LYS LEU LEU LYS LYS LEU ASP PHE GLY TYR SEQRES 9 B 226 CYS ARG LEU SER LEU ALA LEU PRO GLN GLU ASN LYS PHE SEQRES 10 B 226 GLN ASN LEU LYS ASP PHE GLU GLY LEU ARG ILE ALA THR SEQRES 11 B 226 SER TYR PRO GLN LEU LEU LYS ARG PHE MET LYS GLU ASN SEQRES 12 B 226 GLY ILE ASN TYR LYS ASN CYS THR LEU THR GLY SER VAL SEQRES 13 B 226 GLU VAL ALA PRO ARG ALA ASN LEU ALA ASP ALA ILE CYS SEQRES 14 B 226 ASP LEU VAL SER SER GLY ALA THR LEU GLN ALA ASN ASN SEQRES 15 B 226 LEU LYS GLU VAL LYS VAL ILE TYR GLU SER ARG ALA CYS SEQRES 16 B 226 LEU ILE GLN LYS GLU ASN ALA LEU SER LYS GLU LYS GLN SEQRES 17 B 226 ALA LEU VAL ASP LYS ILE MET LEU ARG VAL ALA GLY VAL SEQRES 18 B 226 MET GLN ALA ARG GLU HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ACT A 304 4 HET ACT A 305 4 HET PRP A 306 22 HET MG A 307 1 HET EDO A 308 4 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ACT B 304 4 HET PRP B 305 22 HET MG B 306 1 HET EDO B 307 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 6(ZN 2+) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 8 PRP 2(C5 H13 O14 P3) FORMUL 9 MG 2(MG 2+) FORMUL 10 EDO 2(C2 H6 O2) FORMUL 18 HOH *207(H2 O) HELIX 1 AA1 LEU A 17 CYS A 28 1 12 HELIX 2 AA2 ARG A 54 ASP A 56 5 3 HELIX 3 AA3 ASP A 57 ASP A 64 1 8 HELIX 4 AA4 GLU A 74 LEU A 87 1 14 HELIX 5 AA5 ASN A 118 GLU A 123 5 6 HELIX 6 AA6 TYR A 131 ASN A 142 1 12 HELIX 7 AA7 SER A 154 ALA A 158 5 5 HELIX 8 AA8 GLY A 174 ASN A 180 1 7 HELIX 9 AA9 SER A 203 MET A 221 1 19 HELIX 10 AB1 LEU B 17 CYS B 28 1 12 HELIX 11 AB2 ARG B 54 ASP B 56 5 3 HELIX 12 AB3 ASP B 57 ASP B 64 1 8 HELIX 13 AB4 GLU B 74 LEU B 87 1 14 HELIX 14 AB5 ASN B 118 GLU B 123 5 6 HELIX 15 AB6 TYR B 131 ASN B 142 1 12 HELIX 16 AB7 SER B 154 ALA B 158 5 5 HELIX 17 AB8 GLY B 174 ASN B 180 1 7 HELIX 18 AB9 SER B 203 ARG B 224 1 22 SHEET 1 AA1 6 ILE A 40 PHE A 42 0 SHEET 2 AA1 6 ILE A 48 VAL A 53 -1 O ILE A 50 N ALA A 41 SHEET 3 AA1 6 LEU A 7 GLN A 12 1 N LEU A 7 O ASP A 49 SHEET 4 AA1 6 LEU A 69 GLY A 73 1 O LEU A 69 N ALA A 10 SHEET 5 AA1 6 ALA A 193 GLN A 197 -1 O ILE A 196 N GLY A 70 SHEET 6 AA1 6 LYS A 94 LYS A 98 -1 N LYS A 97 O LEU A 195 SHEET 1 AA2 5 LYS A 147 THR A 150 0 SHEET 2 AA2 5 ARG A 126 THR A 129 1 N ILE A 127 O LYS A 147 SHEET 3 AA2 5 ALA A 166 VAL A 171 1 O CYS A 168 N ALA A 128 SHEET 4 AA2 5 CYS A 104 PRO A 111 -1 N ALA A 109 O ILE A 167 SHEET 5 AA2 5 LEU A 182 SER A 191 -1 O ILE A 188 N LEU A 106 SHEET 1 AA3 7 MET B 32 HIS B 33 0 SHEET 2 AA3 7 ILE B 40 SER B 43 -1 O PHE B 42 N HIS B 33 SHEET 3 AA3 7 ILE B 48 VAL B 53 -1 O ILE B 48 N SER B 43 SHEET 4 AA3 7 LEU B 7 GLN B 12 1 N LEU B 7 O ASP B 49 SHEET 5 AA3 7 LEU B 69 GLY B 73 1 O LEU B 69 N ARG B 8 SHEET 6 AA3 7 ALA B 193 GLN B 197 -1 O ILE B 196 N GLY B 70 SHEET 7 AA3 7 LYS B 94 LYS B 98 -1 N LYS B 97 O LEU B 195 SHEET 1 AA4 5 LYS B 147 THR B 150 0 SHEET 2 AA4 5 ARG B 126 THR B 129 1 N ILE B 127 O LYS B 147 SHEET 3 AA4 5 ALA B 166 VAL B 171 1 O CYS B 168 N ALA B 128 SHEET 4 AA4 5 CYS B 104 PRO B 111 -1 N ALA B 109 O ILE B 167 SHEET 5 AA4 5 LEU B 182 SER B 191 -1 O ILE B 188 N LEU B 106 LINK ND1 HIS A 33 ZN ZN A 301 1555 1555 2.21 LINK ND1 HIS A 33 ZN ZN A 302 1555 1555 2.52 LINK NE2 HIS A 35 ZN ZN A 301 1555 1555 2.42 LINK NE2 HIS A 35 ZN ZN A 302 1555 1555 2.52 LINK OD1 ASP A 55 ZN ZN A 303 1555 1555 2.42 LINK OD2AASP A 56 ZN ZN A 303 1555 1555 2.49 LINK ZN ZN A 301 OE2 GLU B 78 3555 1555 2.11 LINK ZN ZN A 301 OE2 GLU B 81 3555 1555 1.78 LINK ZN ZN A 302 O HOH A 487 1555 1555 2.68 LINK ZN ZN A 302 OE1 GLU B 78 3555 1555 2.24 LINK O2A PRP A 306 MG MG A 307 1555 1555 2.52 LINK O1B PRP A 306 MG MG A 307 1555 1555 2.97 LINK MG MG A 307 O HOH A 414 1555 1555 2.13 LINK NE2 HIS B 33 ZN ZN B 301 1555 1555 2.51 LINK NE2BHIS B 35 ZN ZN B 301 1555 1555 1.92 LINK NE2AHIS B 35 ZN ZN B 303 1555 4446 2.68 LINK OD1 ASP B 55 ZN ZN B 302 1555 1555 2.27 LINK OD2 ASP B 56 ZN ZN B 302 1555 1555 2.64 LINK OD2AASP B 100 ZN ZN B 303 1555 1555 2.08 LINK ZN ZN B 302 O HOH B 496 1555 1555 2.70 LINK O1A PRP B 305 MG MG B 306 1555 1555 1.81 LINK O3B PRP B 305 MG MG B 306 1555 1555 2.15 LINK MG MG B 306 O HOH B 480 1555 1555 2.75 CRYST1 66.003 79.690 91.119 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010975 0.00000