HEADER HORMONE RECEPTOR 21-DEC-16 5UC1 TITLE STRUCTURAL ANALYSIS OF GLUCOCORTICOID RECEPTOR BETA LIGAND BINDING TITLE 2 DOMAIN COMPLEXED WITH GLUCOCORTICOID ANTAGONIST RU-486: IMPLICATION TITLE 3 OF HELIX 12 IN ANTAGONISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HETEROCEPHALUS GLABER; SOURCE 3 ORGANISM_COMMON: NAKED MOLE RAT; SOURCE 4 ORGANISM_TAXID: 10181; SOURCE 5 GENE: GW7_10599; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR RECEPTOR, HORMONE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,J.MIN REVDAT 3 04-OCT-23 5UC1 1 HETSYN REVDAT 2 20-JUN-18 5UC1 1 JRNL REVDAT 1 27-DEC-17 5UC1 0 JRNL AUTH J.MIN,L.PERERA,J.M.KRAHN,C.M.JEWELL,A.F.MOON,J.A.CIDLOWSKI, JRNL AUTH 2 L.C.PEDERSEN JRNL TITL PROBING DOMINANT NEGATIVE BEHAVIOR OF GLUCOCORTICOID JRNL TITL 2 RECEPTOR BETA THROUGH A HYBRID STRUCTURAL AND BIOCHEMICAL JRNL TITL 3 APPROACH. JRNL REF MOL. CELL. BIOL. 2018 JRNL REFN ESSN 1098-5549 JRNL PMID 29437838 JRNL DOI 10.1128/MCB.00453-17 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 20699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0978 - 4.4945 0.99 2841 151 0.1867 0.2110 REMARK 3 2 4.4945 - 3.5685 1.00 2863 143 0.1799 0.2482 REMARK 3 3 3.5685 - 3.1178 1.00 2855 150 0.2142 0.2688 REMARK 3 4 3.1178 - 2.8328 1.00 2820 151 0.2307 0.3025 REMARK 3 5 2.8328 - 2.6299 1.00 2870 152 0.2294 0.3147 REMARK 3 6 2.6299 - 2.4749 0.99 2845 147 0.2610 0.3005 REMARK 3 7 2.4749 - 2.3509 0.89 2575 136 0.3011 0.3605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3495 REMARK 3 ANGLE : 0.873 4776 REMARK 3 CHIRALITY : 0.043 570 REMARK 3 PLANARITY : 0.005 554 REMARK 3 DIHEDRAL : 13.016 2001 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20767 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 5.0 AND 20 % MPD (V/V), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.60067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 257.20133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 192.90100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 321.50167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.30033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 517 REMARK 465 PRO A 518 REMARK 465 ALA A 519 REMARK 465 SER A 612 REMARK 465 SER A 613 REMARK 465 TRP A 727 REMARK 465 LEU A 728 REMARK 465 LYS A 729 REMARK 465 PRO A 730 REMARK 465 GLU A 731 REMARK 465 SER A 732 REMARK 465 THR A 733 REMARK 465 SER A 734 REMARK 465 HIS A 735 REMARK 465 PHE A 736 REMARK 465 SER A 737 REMARK 465 LEU A 738 REMARK 465 SER B 517 REMARK 465 PRO B 518 REMARK 465 ALA B 519 REMARK 465 SER B 612 REMARK 465 SER B 613 REMARK 465 TRP B 727 REMARK 465 LEU B 728 REMARK 465 LYS B 729 REMARK 465 PRO B 730 REMARK 465 GLU B 731 REMARK 465 SER B 732 REMARK 465 THR B 733 REMARK 465 SER B 734 REMARK 465 HIS B 735 REMARK 465 PHE B 736 REMARK 465 SER B 737 REMARK 465 LEU B 738 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 523 CD OE1 NE2 REMARK 470 GLU A 538 CG CD OE1 OE2 REMARK 470 LYS A 572 CG CD CE NZ REMARK 470 ASN A 615 CG OD1 ND2 REMARK 470 GLU A 627 CG CD OE1 OE2 REMARK 470 GLN A 628 CG CD OE1 NE2 REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 GLN A 653 CG CD OE1 NE2 REMARK 470 GLN A 679 OE1 NE2 REMARK 470 GLU A 680 CG CD OE1 OE2 REMARK 470 GLU A 684 CG CD OE1 OE2 REMARK 470 GLU A 701 CD OE1 OE2 REMARK 470 ASN A 703 CG OD1 ND2 REMARK 470 SER A 705 OG REMARK 470 GLN A 706 CD OE1 NE2 REMARK 470 GLN A 709 CG CD OE1 NE2 REMARK 470 THR A 726 OG1 CG2 REMARK 470 GLN B 523 CG CD OE1 NE2 REMARK 470 GLU B 533 CG CD OE1 OE2 REMARK 470 GLU B 538 CG CD OE1 OE2 REMARK 470 LYS B 572 CD CE NZ REMARK 470 ASN B 615 CG OD1 ND2 REMARK 470 GLU B 627 CG CD OE1 OE2 REMARK 470 GLN B 628 CG CD OE1 NE2 REMARK 470 LYS B 650 CG CD CE NZ REMARK 470 GLN B 653 CG CD OE1 NE2 REMARK 470 LYS B 673 CG CD CE NZ REMARK 470 GLU B 674 CG CD OE1 OE2 REMARK 470 GLN B 679 OE1 NE2 REMARK 470 GLU B 680 CG CD OE1 OE2 REMARK 470 LYS B 699 CD CE NZ REMARK 470 ARG B 700 NE CZ NH1 NH2 REMARK 470 GLU B 701 OE1 OE2 REMARK 470 ASN B 703 CG OD1 ND2 REMARK 470 SER B 705 OG REMARK 470 GLN B 706 CD OE1 NE2 REMARK 470 GLN B 709 CG CD OE1 NE2 REMARK 470 THR B 726 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 577 O HOH B 901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 595 -12.03 -144.83 REMARK 500 LEU A 623 81.22 -152.25 REMARK 500 ASP B 545 -72.48 -68.15 REMARK 500 SER B 595 -9.09 -148.45 REMARK 500 LEU B 623 82.66 -155.04 REMARK 500 ARG B 700 -73.87 -62.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 802 REMARK 610 CPS A 803 REMARK 610 CPS B 802 REMARK 610 CPS B 803 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 486 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 486 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 809 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UC3 RELATED DB: PDB DBREF 5UC1 A 517 738 PDB 5UC1 5UC1 517 738 DBREF 5UC1 B 517 738 PDB 5UC1 5UC1 517 738 SEQRES 1 A 222 SER PRO ALA THR LEU PRO GLN LEU THR PRO THR LEU VAL SEQRES 2 A 222 SER LEU LEU GLU VAL ILE GLU PRO GLU VAL LEU TYR ALA SEQRES 3 A 222 GLY TYR ASP GLY THR VAL PRO ASP THR THR TRP ARG ILE SEQRES 4 A 222 MET THR THR LEU ASN MET LEU GLY GLY ARG GLN VAL ILE SEQRES 5 A 222 ALA ALA VAL LYS TRP ALA LYS ALA ILE PRO GLY PHE ARG SEQRES 6 A 222 ASN LEU HIS LEU ASP ASP GLN MET THR LEU LEU GLN TYR SEQRES 7 A 222 SER TRP MET SER LEU MET ALA PHE ALA LEU GLY TRP ARG SEQRES 8 A 222 SER TYR ARG GLN SER SER GLY ASN VAL LEU CYS PHE ALA SEQRES 9 A 222 PRO ASP LEU ILE ILE ASN GLU GLN ARG MET GLY LEU PRO SEQRES 10 A 222 TYR MET TYR ASP GLN CYS LYS GLN MET LEU PHE VAL SER SEQRES 11 A 222 SER GLU LEU LYS ARG LEU GLN VAL SER TYR GLU GLU TYR SEQRES 12 A 222 LEU CYS MET LYS THR LEU LEU LEU PHE SER SER VAL PRO SEQRES 13 A 222 LYS GLU GLY LEU LYS SER GLN GLU LEU PHE ASP GLU ILE SEQRES 14 A 222 ARG MET THR TYR ILE LYS GLU LEU GLY LYS ALA ILE VAL SEQRES 15 A 222 LYS ARG GLU GLY ASN SER SER GLN ASN TRP GLN ARG PHE SEQRES 16 A 222 TYR GLN LEU THR LYS LEU LEU ASP SER MET HIS GLU ASN SEQRES 17 A 222 VAL THR TRP LEU LYS PRO GLU SER THR SER HIS PHE SER SEQRES 18 A 222 LEU SEQRES 1 B 222 SER PRO ALA THR LEU PRO GLN LEU THR PRO THR LEU VAL SEQRES 2 B 222 SER LEU LEU GLU VAL ILE GLU PRO GLU VAL LEU TYR ALA SEQRES 3 B 222 GLY TYR ASP GLY THR VAL PRO ASP THR THR TRP ARG ILE SEQRES 4 B 222 MET THR THR LEU ASN MET LEU GLY GLY ARG GLN VAL ILE SEQRES 5 B 222 ALA ALA VAL LYS TRP ALA LYS ALA ILE PRO GLY PHE ARG SEQRES 6 B 222 ASN LEU HIS LEU ASP ASP GLN MET THR LEU LEU GLN TYR SEQRES 7 B 222 SER TRP MET SER LEU MET ALA PHE ALA LEU GLY TRP ARG SEQRES 8 B 222 SER TYR ARG GLN SER SER GLY ASN VAL LEU CYS PHE ALA SEQRES 9 B 222 PRO ASP LEU ILE ILE ASN GLU GLN ARG MET GLY LEU PRO SEQRES 10 B 222 TYR MET TYR ASP GLN CYS LYS GLN MET LEU PHE VAL SER SEQRES 11 B 222 SER GLU LEU LYS ARG LEU GLN VAL SER TYR GLU GLU TYR SEQRES 12 B 222 LEU CYS MET LYS THR LEU LEU LEU PHE SER SER VAL PRO SEQRES 13 B 222 LYS GLU GLY LEU LYS SER GLN GLU LEU PHE ASP GLU ILE SEQRES 14 B 222 ARG MET THR TYR ILE LYS GLU LEU GLY LYS ALA ILE VAL SEQRES 15 B 222 LYS ARG GLU GLY ASN SER SER GLN ASN TRP GLN ARG PHE SEQRES 16 B 222 TYR GLN LEU THR LYS LEU LEU ASP SER MET HIS GLU ASN SEQRES 17 B 222 VAL THR TRP LEU LYS PRO GLU SER THR SER HIS PHE SER SEQRES 18 B 222 LEU HET 486 A 801 32 HET CPS A 802 28 HET CPS A 803 25 HET CL A 804 1 HET CL A 805 1 HET MPD A 806 8 HET EDO A 807 4 HET EDO A 808 4 HET 486 B 801 32 HET CPS B 802 28 HET CPS B 803 25 HET CL B 804 1 HET CL B 805 1 HET MPD B 806 8 HET EDO B 807 4 HET EDO B 808 4 HET EDO B 809 4 HETNAM 486 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17- HETNAM 2 486 PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC HETNAM 3 486 AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN 486 RU-486; MIFEPRISTONE HETSYN CPS CHAPS HETSYN EDO ETHYLENE GLYCOL FORMUL 3 486 2(C29 H35 N O2) FORMUL 4 CPS 4(C32 H58 N2 O7 S) FORMUL 6 CL 4(CL 1-) FORMUL 8 MPD 2(C6 H14 O2) FORMUL 9 EDO 5(C2 H6 O2) FORMUL 20 HOH *19(H2 O) HELIX 1 AA1 THR A 527 ILE A 535 1 9 HELIX 2 AA2 THR A 551 LYS A 575 1 25 HELIX 3 AA3 GLY A 579 LEU A 583 5 5 HELIX 4 AA4 HIS A 584 TYR A 594 1 11 HELIX 5 AA5 SER A 595 GLN A 611 1 17 HELIX 6 AA6 ASN A 626 GLY A 631 1 6 HELIX 7 AA7 TYR A 634 LYS A 640 1 7 HELIX 8 AA8 MET A 642 GLN A 653 1 12 HELIX 9 AA9 SER A 655 PHE A 668 1 14 HELIX 10 AB1 PRO A 672 LEU A 676 5 5 HELIX 11 AB2 SER A 678 GLY A 702 1 25 HELIX 12 AB3 GLN A 706 MET A 721 1 16 HELIX 13 AB4 THR B 527 ILE B 535 1 9 HELIX 14 AB5 THR B 551 LYS B 575 1 25 HELIX 15 AB6 GLY B 579 LEU B 583 5 5 HELIX 16 AB7 HIS B 584 TYR B 594 1 11 HELIX 17 AB8 SER B 595 GLN B 611 1 17 HELIX 18 AB9 ASN B 626 GLY B 631 1 6 HELIX 19 AC1 TYR B 634 LYS B 640 1 7 HELIX 20 AC2 MET B 642 GLN B 653 1 12 HELIX 21 AC3 SER B 655 SER B 669 1 15 HELIX 22 AC4 PRO B 672 LEU B 676 5 5 HELIX 23 AC5 SER B 678 GLY B 702 1 25 HELIX 24 AC6 SER B 705 HIS B 722 1 18 SHEET 1 AA1 2 LEU A 617 ALA A 620 0 SHEET 2 AA1 2 LEU A 623 ILE A 625 -1 O ILE A 625 N LEU A 617 SHEET 1 AA2 2 LEU B 617 ALA B 620 0 SHEET 2 AA2 2 LEU B 623 ILE B 625 -1 O ILE B 625 N LEU B 617 SITE 1 AC1 10 LEU A 559 ASN A 560 GLY A 563 GLN A 566 SITE 2 AC1 10 VAL A 567 MET A 600 ARG A 607 PHE A 619 SITE 3 AC1 10 HOH A 906 486 B 801 SITE 1 AC2 6 THR A 551 TRP A 553 ILE B 568 GLN B 593 SITE 2 AC2 6 TRP B 596 CL B 804 SITE 1 AC3 8 GLN A 641 PHE A 644 SER A 720 GLU A 723 SITE 2 AC3 8 ASN A 724 TYR B 634 ASP B 637 GLN B 638 SITE 1 AC4 4 GLN A 593 THR B 552 PRO B 633 CPS B 802 SITE 1 AC5 3 SER A 678 GLU A 680 LEU A 681 SITE 1 AC6 1 LYS A 663 SITE 1 AC7 9 486 A 801 LEU B 559 ASN B 560 GLY B 564 SITE 2 AC7 9 GLN B 566 MET B 600 ARG B 607 PHE B 619 SITE 3 AC7 9 MET B 642 SITE 1 AC8 5 MET A 589 GLN A 593 CL A 804 THR B 551 SITE 2 AC8 5 TRP B 553 SITE 1 AC9 9 TYR A 634 ASP A 637 GLN A 638 GLN B 641 SITE 2 AC9 9 PHE B 644 SER B 720 MET B 721 GLU B 723 SITE 3 AC9 9 ASN B 724 SITE 1 AD1 4 THR A 551 THR A 552 CPS A 802 GLN B 593 SITE 1 AD2 3 SER B 678 GLU B 680 LEU B 681 SITE 1 AD3 1 LYS B 663 SITE 1 AD4 1 GLY B 694 SITE 1 AD5 6 GLU B 648 ARG B 651 GLN B 713 LYS B 716 SITE 2 AD5 6 LEU B 717 SER B 720 CRYST1 48.361 48.361 385.802 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020678 0.011938 0.000000 0.00000 SCALE2 0.000000 0.023877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002592 0.00000