data_5UC6 # _entry.id 5UC6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UC6 pdb_00005uc6 10.2210/pdb5uc6/pdb WWPDB D_1000225640 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UC6 _pdbx_database_status.recvd_initial_deposition_date 2016-12-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ren, X.' 1 ? 'Pyle, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 810 _citation.page_last 810 _citation.title 'Structural basis for IL-1 alpha recognition by a modified DNA aptamer that specifically inhibits IL-1 alpha signaling.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-017-00864-2 _citation.pdbx_database_id_PubMed 28993621 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, X.' 1 ? primary 'Gelinas, A.D.' 2 ? primary 'von Carlowitz, I.' 3 ? primary 'Janjic, N.' 4 ? primary 'Pyle, A.M.' 5 ? # _cell.entry_id 5UC6 _cell.length_a 74.790 _cell.length_b 74.790 _cell.length_c 86.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UC6 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Interleukin-1 alpha' 18064.486 1 ? ? 'residues 113-271' ? 2 polymer syn ;DNA (5'-D(*CP*G)-R(P*(85Y))-D(P*GP*AP*G)-R(P*(85Y)P*(85Y))-D(P*A)-R(P*(85Y))-D(P*GP*GP*G)-R(P*(85Y)P*(85Y))-D(P*AP*GP*AP*G)-R(P*(85Y))-D(P*CP*GP*(ATD))-3') ; 8366.890 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 6 water nat water 18.015 145 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IL-1 alpha,Hematopoietin-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLY VTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA ; ;SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLY VTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA ; A ? 2 polydeoxyribonucleotide no yes ;(DC)(DG)(85Y)(DG)(DA)(DG)(85Y)(85Y)(DA)(85Y)(DG)(DG)(DG)(85Y)(85Y)(DA)(DG)(DA) (DG)(85Y)(DC)(DG)(ATD) ; CGXGAGXXAXGGGXXAGAGXCGT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 PRO n 1 4 PHE n 1 5 SER n 1 6 PHE n 1 7 LEU n 1 8 SER n 1 9 ASN n 1 10 VAL n 1 11 LYS n 1 12 TYR n 1 13 ASN n 1 14 PHE n 1 15 MET n 1 16 ARG n 1 17 ILE n 1 18 ILE n 1 19 LYS n 1 20 TYR n 1 21 GLU n 1 22 PHE n 1 23 ILE n 1 24 LEU n 1 25 ASN n 1 26 ASP n 1 27 ALA n 1 28 LEU n 1 29 ASN n 1 30 GLN n 1 31 SER n 1 32 ILE n 1 33 ILE n 1 34 ARG n 1 35 ALA n 1 36 ASN n 1 37 ASP n 1 38 GLN n 1 39 TYR n 1 40 LEU n 1 41 THR n 1 42 ALA n 1 43 ALA n 1 44 ALA n 1 45 LEU n 1 46 HIS n 1 47 ASN n 1 48 LEU n 1 49 ASP n 1 50 GLU n 1 51 ALA n 1 52 VAL n 1 53 LYS n 1 54 PHE n 1 55 ASP n 1 56 MET n 1 57 GLY n 1 58 ALA n 1 59 TYR n 1 60 LYS n 1 61 SER n 1 62 SER n 1 63 LYS n 1 64 ASP n 1 65 ASP n 1 66 ALA n 1 67 LYS n 1 68 ILE n 1 69 THR n 1 70 VAL n 1 71 ILE n 1 72 LEU n 1 73 ARG n 1 74 ILE n 1 75 SER n 1 76 LYS n 1 77 THR n 1 78 GLN n 1 79 LEU n 1 80 TYR n 1 81 VAL n 1 82 THR n 1 83 ALA n 1 84 GLN n 1 85 ASP n 1 86 GLU n 1 87 ASP n 1 88 GLN n 1 89 PRO n 1 90 VAL n 1 91 LEU n 1 92 LEU n 1 93 LYS n 1 94 GLU n 1 95 MET n 1 96 PRO n 1 97 GLU n 1 98 ILE n 1 99 PRO n 1 100 LYS n 1 101 THR n 1 102 ILE n 1 103 THR n 1 104 GLY n 1 105 SER n 1 106 GLU n 1 107 THR n 1 108 ASN n 1 109 LEU n 1 110 LEU n 1 111 PHE n 1 112 PHE n 1 113 TRP n 1 114 GLU n 1 115 THR n 1 116 HIS n 1 117 GLY n 1 118 THR n 1 119 LYS n 1 120 ASN n 1 121 TYR n 1 122 PHE n 1 123 THR n 1 124 SER n 1 125 VAL n 1 126 ALA n 1 127 HIS n 1 128 PRO n 1 129 ASN n 1 130 LEU n 1 131 PHE n 1 132 ILE n 1 133 ALA n 1 134 THR n 1 135 LYS n 1 136 GLN n 1 137 ASP n 1 138 TYR n 1 139 TRP n 1 140 VAL n 1 141 CYS n 1 142 LEU n 1 143 ALA n 1 144 GLY n 1 145 GLY n 1 146 PRO n 1 147 PRO n 1 148 SER n 1 149 ILE n 1 150 THR n 1 151 ASP n 1 152 PHE n 1 153 GLN n 1 154 ILE n 1 155 LEU n 1 156 GLU n 1 157 ASN n 1 158 GLN n 1 159 ALA n 2 1 DC n 2 2 DG n 2 3 85Y n 2 4 DG n 2 5 DA n 2 6 DG n 2 7 85Y n 2 8 85Y n 2 9 DA n 2 10 85Y n 2 11 DG n 2 12 DG n 2 13 DG n 2 14 85Y n 2 15 85Y n 2 16 DA n 2 17 DG n 2 18 DA n 2 19 DG n 2 20 85Y n 2 21 DC n 2 22 DG n 2 23 ATD n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 159 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'IL1A, IL1F1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP IL1A_HUMAN P01583 ? 1 ;SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLY VTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA ; 113 2 PDB 5UC6 5UC6 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UC6 A 1 ? 159 ? P01583 113 ? 271 ? 1 159 2 2 5UC6 B 1 ? 23 ? 5UC6 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 85Y 'RNA linking' n ;2'-deoxy-5-{[(naphthalen-2-yl)methyl]carbamoyl}uridine 5'-(dihydrogen phosphate) ; ? 'C21 H22 N3 O9 P' 491.388 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATD 'DNA linking' n "THYMIDINE-3'-PHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UC6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M NaCl, 0.1 M Na acetate, and 22% polyethylene glycol 8,000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-03-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9999 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5UC6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 64.77 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16642 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.7 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.21 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.56 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5UC6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16627 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 64.770 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs 99.08 _refine.ls_R_factor_obs 0.1794 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1776 _refine.ls_R_factor_R_free 0.2193 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.73 _refine.ls_number_reflns_R_free 787 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2ILA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 22.45 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1214 _refine_hist.pdbx_number_atoms_nucleic_acid 548 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 1916 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 64.770 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1863 'X-RAY DIFFRACTION' ? f_angle_d 1.344 ? ? 2581 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.686 ? ? 966 'X-RAY DIFFRACTION' ? f_chiral_restr 0.097 ? ? 279 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 244 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.1000 2.2316 2626 0.2144 100.00 0.2648 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.2316 2.4039 2625 0.2278 100.00 0.2762 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.4039 2.6458 2598 0.2170 100.00 0.2707 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.6458 3.0287 2601 0.2106 99.00 0.2314 . . 164 . . . . 'X-RAY DIFFRACTION' . 3.0287 3.8158 2658 0.1648 99.00 0.1853 . . 123 . . . . 'X-RAY DIFFRACTION' . 3.8158 64.8006 2732 0.1497 97.00 0.2009 . . 118 . . . . # _struct.entry_id 5UC6 _struct.title 'Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UC6 _struct_keywords.text 'SOMAmer, IMMUNE SYSTEM-DNA complex' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 5 ? I N N 6 ? J N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 47 ? ALA A 51 ? ASN A 47 ALA A 51 5 ? 5 HELX_P HELX_P2 AA2 SER A 105 ? LEU A 109 ? SER A 105 LEU A 109 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 2 "O3'" ? ? ? 1_555 B 85Y 3 P ? ? B DG 2 B 85Y 3 1_555 ? ? ? ? ? ? ? 1.558 ? ? covale2 covale one ? B 85Y 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B 85Y 3 B DG 4 1_555 ? ? ? ? ? ? ? 1.562 ? ? covale3 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 85Y 7 P ? ? B DG 6 B 85Y 7 1_555 ? ? ? ? ? ? ? 1.562 ? ? covale4 covale one ? B 85Y 7 "O3'" ? ? ? 1_555 B 85Y 8 P ? ? B 85Y 7 B 85Y 8 1_555 ? ? ? ? ? ? ? 1.562 ? ? covale5 covale one ? B 85Y 8 "O3'" ? ? ? 1_555 B DA 9 P ? ? B 85Y 8 B DA 9 1_555 ? ? ? ? ? ? ? 1.558 ? ? covale6 covale both ? B DA 9 "O3'" ? ? ? 1_555 B 85Y 10 P ? ? B DA 9 B 85Y 10 1_555 ? ? ? ? ? ? ? 1.557 ? ? covale7 covale one ? B 85Y 10 "O3'" ? ? ? 1_555 B DG 11 P ? ? B 85Y 10 B DG 11 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale8 covale both ? B DG 13 "O3'" ? ? ? 1_555 B 85Y 14 P ? ? B DG 13 B 85Y 14 1_555 ? ? ? ? ? ? ? 1.561 ? ? covale9 covale one ? B 85Y 14 "O3'" ? ? ? 1_555 B 85Y 15 P ? ? B 85Y 14 B 85Y 15 1_555 ? ? ? ? ? ? ? 1.562 ? ? covale10 covale one ? B 85Y 15 "O3'" ? ? ? 1_555 B DA 16 P ? ? B 85Y 15 B DA 16 1_555 ? ? ? ? ? ? ? 1.560 ? ? covale11 covale both ? B DG 19 "O3'" ? ? ? 1_555 B 85Y 20 P ? ? B DG 19 B 85Y 20 1_555 ? ? ? ? ? ? ? 1.559 ? ? covale12 covale one ? B 85Y 20 "O3'" ? ? ? 1_555 B DC 21 P ? ? B 85Y 20 B DC 21 1_555 ? ? ? ? ? ? ? 1.557 ? ? covale13 covale one ? B DG 22 "O3'" ? ? ? 1_555 H PO4 . P ? ? B DG 22 B PO4 101 1_555 ? ? ? ? ? ? ? 1.559 ? ? metalc1 metalc ? ? A LYS 11 O ? ? ? 1_555 C MG . MG ? ? A LYS 11 A MG 201 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc2 metalc ? ? A ASP 64 OD1 ? ? ? 1_555 D NA . NA ? ? A ASP 64 A NA 202 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc3 metalc ? ? A ASP 65 O ? ? ? 1_555 D NA . NA ? ? A ASP 65 A NA 202 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc4 metalc ? ? A VAL 90 O ? ? ? 1_555 F MG . MG ? ? A VAL 90 A MG 204 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc5 metalc ? ? A ASN 108 O ? ? ? 1_555 G MG . MG ? ? A ASN 108 A MG 205 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc6 metalc ? ? A LEU 110 O ? ? ? 1_555 G MG . MG ? ? A LEU 110 A MG 205 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc7 metalc ? ? A SER 124 OG ? ? ? 1_555 G MG . MG ? ? A SER 124 A MG 205 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc8 metalc ? ? A ILE 132 O ? ? ? 1_555 E MG . MG ? ? A ILE 132 A MG 203 1_555 ? ? ? ? ? ? ? 2.963 ? ? metalc9 metalc ? ? A VAL 140 O ? ? ? 1_555 F MG . MG ? ? A VAL 140 A MG 204 1_555 ? ? ? ? ? ? ? 2.942 ? ? metalc10 metalc ? ? A THR 150 O ? ? ? 1_555 E MG . MG ? ? A THR 150 A MG 203 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc11 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 202 A HOH 333 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc12 metalc ? ? D NA . NA ? ? ? 1_555 B 85Y 7 O21 ? ? A NA 202 B 85Y 7 1_555 ? ? ? ? ? ? ? 2.526 ? ? metalc13 metalc ? ? D NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 202 B HOH 222 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc14 metalc ? ? D NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 202 B HOH 245 1_555 ? ? ? ? ? ? ? 2.627 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 B DG 22 N1 ? ? B DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 B DG 22 O6 ? ? B DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DG 22 N2 ? ? B DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 21 N3 ? ? B DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 21 O2 ? ? B DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 21 N4 ? ? B DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B 85Y 3 N3 ? ? ? 1_555 B DA 16 N7 ? ? B 85Y 3 B DA 16 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog8 hydrog ? ? B 85Y 3 O2 ? ? ? 1_555 B DA 16 N6 ? ? B 85Y 3 B DA 16 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog9 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 17 N3 ? ? B DG 4 B DG 17 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog10 hydrog ? ? B DG 4 N3 ? ? ? 1_555 B DG 17 N2 ? ? B DG 4 B DG 17 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog11 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 19 N7 ? ? B DG 4 B DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog12 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 19 O6 ? ? B DG 4 B DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog13 hydrog ? ? B DA 5 N6 ? ? ? 1_555 B DA 18 N7 ? ? B DA 5 B DA 18 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog14 hydrog ? ? B DA 5 N7 ? ? ? 1_555 B DA 18 N6 ? ? B DA 5 B DA 18 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DG 17 O6 ? ? B DG 6 B DG 17 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog16 hydrog ? ? B DG 6 O6 ? ? ? 1_555 B DG 17 N1 ? ? B DG 6 B DG 17 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog17 hydrog ? ? B 85Y 8 N3 ? ? ? 1_555 B DA 16 N1 ? ? B 85Y 8 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B 85Y 8 O4 ? ? ? 1_555 B DA 16 N6 ? ? B 85Y 8 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 9 N1 ? ? ? 1_555 B 85Y 15 N3 ? ? B DA 9 B 85Y 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 9 N6 ? ? ? 1_555 B 85Y 15 O4 ? ? B DA 9 B 85Y 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 146 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 146 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 147 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 147 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.92 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 101 ? THR A 103 ? THR A 101 THR A 103 AA1 2 LYS A 11 ? ASP A 26 ? LYS A 11 ASP A 26 AA1 3 PHE A 152 ? LEU A 155 ? PHE A 152 LEU A 155 AA1 4 LYS A 119 ? SER A 124 ? LYS A 119 SER A 124 AA1 5 PHE A 111 ? HIS A 116 ? PHE A 111 HIS A 116 AA1 6 THR A 69 ? ILE A 74 ? THR A 69 ILE A 74 AA1 7 PHE A 54 ? SER A 61 ? PHE A 54 SER A 61 AA1 8 LYS A 11 ? ASP A 26 ? LYS A 11 ASP A 26 AA2 1 SER A 31 ? ARG A 34 ? SER A 31 ARG A 34 AA2 2 LEU A 40 ? ALA A 43 ? LEU A 40 ALA A 43 AA3 1 LEU A 79 ? THR A 82 ? LEU A 79 THR A 82 AA3 2 LEU A 91 ? GLU A 94 ? LEU A 91 GLU A 94 AA4 1 PHE A 131 ? ALA A 133 ? PHE A 131 ALA A 133 AA4 2 CYS A 141 ? ALA A 143 ? CYS A 141 ALA A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 102 ? O ILE A 102 N TYR A 12 ? N TYR A 12 AA1 2 3 N ASN A 25 ? N ASN A 25 O GLN A 153 ? O GLN A 153 AA1 3 4 O PHE A 152 ? O PHE A 152 N ASN A 120 ? N ASN A 120 AA1 4 5 O THR A 123 ? O THR A 123 N PHE A 112 ? N PHE A 112 AA1 5 6 O PHE A 111 ? O PHE A 111 N VAL A 70 ? N VAL A 70 AA1 6 7 O ARG A 73 ? O ARG A 73 N ASP A 55 ? N ASP A 55 AA1 7 8 O ALA A 58 ? O ALA A 58 N MET A 15 ? N MET A 15 AA2 1 2 N SER A 31 ? N SER A 31 O ALA A 43 ? O ALA A 43 AA3 1 2 N TYR A 80 ? N TYR A 80 O LYS A 93 ? O LYS A 93 AA4 1 2 N PHE A 131 ? N PHE A 131 O ALA A 143 ? O ALA A 143 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 5 'binding site for residue MG A 201' AC2 Software A NA 202 ? 6 'binding site for residue NA A 202' AC3 Software A MG 203 ? 5 'binding site for residue MG A 203' AC4 Software A MG 204 ? 6 'binding site for residue MG A 204' AC5 Software A MG 205 ? 6 'binding site for residue MG A 205' AC6 Software B PO4 101 ? 2 'binding site for residue PO4 B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS A 11 ? LYS A 11 . ? 1_555 ? 2 AC1 5 ASN A 13 ? ASN A 13 . ? 1_555 ? 3 AC1 5 LYS A 60 ? LYS A 60 . ? 1_555 ? 4 AC1 5 SER A 61 ? SER A 61 . ? 1_555 ? 5 AC1 5 SER A 62 ? SER A 62 . ? 1_555 ? 6 AC2 6 ASP A 64 ? ASP A 64 . ? 1_555 ? 7 AC2 6 ASP A 65 ? ASP A 65 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH A 333 . ? 1_555 ? 9 AC2 6 85Y B 7 ? 85Y B 7 . ? 1_555 ? 10 AC2 6 HOH J . ? HOH B 222 . ? 1_555 ? 11 AC2 6 HOH J . ? HOH B 245 . ? 1_555 ? 12 AC3 5 TYR A 121 ? TYR A 121 . ? 1_555 ? 13 AC3 5 PHE A 122 ? PHE A 122 . ? 1_555 ? 14 AC3 5 ILE A 132 ? ILE A 132 . ? 1_555 ? 15 AC3 5 THR A 150 ? THR A 150 . ? 1_555 ? 16 AC3 5 PHE A 152 ? PHE A 152 . ? 1_555 ? 17 AC4 6 TYR A 39 ? TYR A 39 . ? 1_555 ? 18 AC4 6 LEU A 40 ? LEU A 40 . ? 1_555 ? 19 AC4 6 PRO A 89 ? PRO A 89 . ? 1_555 ? 20 AC4 6 VAL A 90 ? VAL A 90 . ? 1_555 ? 21 AC4 6 TRP A 139 ? TRP A 139 . ? 1_555 ? 22 AC4 6 VAL A 140 ? VAL A 140 . ? 1_555 ? 23 AC5 6 ALA A 83 ? ALA A 83 . ? 1_555 ? 24 AC5 6 THR A 107 ? THR A 107 . ? 1_555 ? 25 AC5 6 ASN A 108 ? ASN A 108 . ? 1_555 ? 26 AC5 6 LEU A 110 ? LEU A 110 . ? 1_555 ? 27 AC5 6 SER A 124 ? SER A 124 . ? 1_555 ? 28 AC5 6 VAL A 125 ? VAL A 125 . ? 1_555 ? 29 AC6 2 DG B 22 ? DG B 22 . ? 1_555 ? 30 AC6 2 HOH J . ? HOH B 229 . ? 1_555 ? # _atom_sites.entry_id 5UC6 _atom_sites.fract_transf_matrix[1][1] 0.013371 _atom_sites.fract_transf_matrix[1][2] 0.007720 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015439 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011579 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 PHE 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 PHE 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 TRP 113 113 113 TRP TRP A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 HIS 116 116 116 HIS HIS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 HIS 127 127 127 HIS HIS A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 TRP 139 139 139 TRP TRP A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 CYS 141 141 141 CYS CYS A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 ALA 159 159 159 ALA ALA A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 85Y 3 3 3 85Y 2VJ B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 85Y 7 7 7 85Y 2VJ B . n B 2 8 85Y 8 8 8 85Y 2VJ B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 85Y 10 10 10 85Y 2VJ B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DG 13 13 13 DG DG B . n B 2 14 85Y 14 14 14 85Y 2VJ B . n B 2 15 85Y 15 15 15 85Y 2VJ B . n B 2 16 DA 16 16 16 DA DA B . n B 2 17 DG 17 17 17 DG DG B . n B 2 18 DA 18 18 18 DA DA B . n B 2 19 DG 19 19 19 DG DG B . n B 2 20 85Y 20 20 20 85Y 2VJ B . n B 2 21 DC 21 21 21 DC DC B . n B 2 22 DG 22 22 22 DG DG B . n B 2 23 ATD 23 23 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 201 1 MG MG A . D 4 NA 1 202 2 NA NA A . E 3 MG 1 203 3 MG MG A . F 3 MG 1 204 4 MG MG A . G 3 MG 1 205 5 MG MG A . H 5 PO4 1 101 23 PO4 PO3 B . I 6 HOH 1 301 131 HOH HOH A . I 6 HOH 2 302 76 HOH HOH A . I 6 HOH 3 303 89 HOH HOH A . I 6 HOH 4 304 69 HOH HOH A . I 6 HOH 5 305 102 HOH HOH A . I 6 HOH 6 306 35 HOH HOH A . I 6 HOH 7 307 130 HOH HOH A . I 6 HOH 8 308 121 HOH HOH A . I 6 HOH 9 309 28 HOH HOH A . I 6 HOH 10 310 10 HOH HOH A . I 6 HOH 11 311 21 HOH HOH A . I 6 HOH 12 312 137 HOH HOH A . I 6 HOH 13 313 100 HOH HOH A . I 6 HOH 14 314 68 HOH HOH A . I 6 HOH 15 315 4 HOH HOH A . I 6 HOH 16 316 140 HOH HOH A . I 6 HOH 17 317 111 HOH HOH A . I 6 HOH 18 318 27 HOH HOH A . I 6 HOH 19 319 55 HOH HOH A . I 6 HOH 20 320 17 HOH HOH A . I 6 HOH 21 321 30 HOH HOH A . I 6 HOH 22 322 53 HOH HOH A . I 6 HOH 23 323 94 HOH HOH A . I 6 HOH 24 324 3 HOH HOH A . I 6 HOH 25 325 80 HOH HOH A . I 6 HOH 26 326 1 HOH HOH A . I 6 HOH 27 327 96 HOH HOH A . I 6 HOH 28 328 105 HOH HOH A . I 6 HOH 29 329 75 HOH HOH A . I 6 HOH 30 330 32 HOH HOH A . I 6 HOH 31 331 85 HOH HOH A . I 6 HOH 32 332 45 HOH HOH A . I 6 HOH 33 333 19 HOH HOH A . I 6 HOH 34 334 59 HOH HOH A . I 6 HOH 35 335 38 HOH HOH A . I 6 HOH 36 336 41 HOH HOH A . I 6 HOH 37 337 44 HOH HOH A . I 6 HOH 38 338 40 HOH HOH A . I 6 HOH 39 339 79 HOH HOH A . I 6 HOH 40 340 7 HOH HOH A . I 6 HOH 41 341 115 HOH HOH A . I 6 HOH 42 342 34 HOH HOH A . I 6 HOH 43 343 22 HOH HOH A . I 6 HOH 44 344 120 HOH HOH A . I 6 HOH 45 345 8 HOH HOH A . I 6 HOH 46 346 119 HOH HOH A . I 6 HOH 47 347 57 HOH HOH A . I 6 HOH 48 348 128 HOH HOH A . I 6 HOH 49 349 127 HOH HOH A . I 6 HOH 50 350 87 HOH HOH A . I 6 HOH 51 351 11 HOH HOH A . I 6 HOH 52 352 47 HOH HOH A . I 6 HOH 53 353 18 HOH HOH A . I 6 HOH 54 354 109 HOH HOH A . I 6 HOH 55 355 39 HOH HOH A . I 6 HOH 56 356 97 HOH HOH A . I 6 HOH 57 357 5 HOH HOH A . I 6 HOH 58 358 33 HOH HOH A . I 6 HOH 59 359 113 HOH HOH A . I 6 HOH 60 360 125 HOH HOH A . I 6 HOH 61 361 46 HOH HOH A . I 6 HOH 62 362 61 HOH HOH A . I 6 HOH 63 363 37 HOH HOH A . I 6 HOH 64 364 13 HOH HOH A . I 6 HOH 65 365 123 HOH HOH A . I 6 HOH 66 366 26 HOH HOH A . I 6 HOH 67 367 29 HOH HOH A . I 6 HOH 68 368 103 HOH HOH A . I 6 HOH 69 369 138 HOH HOH A . I 6 HOH 70 370 6 HOH HOH A . I 6 HOH 71 371 122 HOH HOH A . I 6 HOH 72 372 133 HOH HOH A . I 6 HOH 73 373 135 HOH HOH A . I 6 HOH 74 374 116 HOH HOH A . I 6 HOH 75 375 134 HOH HOH A . I 6 HOH 76 376 64 HOH HOH A . I 6 HOH 77 377 126 HOH HOH A . I 6 HOH 78 378 110 HOH HOH A . I 6 HOH 79 379 74 HOH HOH A . I 6 HOH 80 380 101 HOH HOH A . I 6 HOH 81 381 118 HOH HOH A . I 6 HOH 82 382 65 HOH HOH A . I 6 HOH 83 383 95 HOH HOH A . I 6 HOH 84 384 73 HOH HOH A . I 6 HOH 85 385 141 HOH HOH A . I 6 HOH 86 386 142 HOH HOH A . I 6 HOH 87 387 132 HOH HOH A . I 6 HOH 88 388 136 HOH HOH A . I 6 HOH 89 389 48 HOH HOH A . I 6 HOH 90 390 81 HOH HOH A . I 6 HOH 91 391 50 HOH HOH A . J 6 HOH 1 201 42 HOH HOH B . J 6 HOH 2 202 144 HOH HOH B . J 6 HOH 3 203 12 HOH HOH B . J 6 HOH 4 204 145 HOH HOH B . J 6 HOH 5 205 92 HOH HOH B . J 6 HOH 6 206 23 HOH HOH B . J 6 HOH 7 207 71 HOH HOH B . J 6 HOH 8 208 14 HOH HOH B . J 6 HOH 9 209 66 HOH HOH B . J 6 HOH 10 210 52 HOH HOH B . J 6 HOH 11 211 90 HOH HOH B . J 6 HOH 12 212 67 HOH HOH B . J 6 HOH 13 213 36 HOH HOH B . J 6 HOH 14 214 20 HOH HOH B . J 6 HOH 15 215 106 HOH HOH B . J 6 HOH 16 216 15 HOH HOH B . J 6 HOH 17 217 16 HOH HOH B . J 6 HOH 18 218 108 HOH HOH B . J 6 HOH 19 219 124 HOH HOH B . J 6 HOH 20 220 49 HOH HOH B . J 6 HOH 21 221 104 HOH HOH B . J 6 HOH 22 222 2 HOH HOH B . J 6 HOH 23 223 58 HOH HOH B . J 6 HOH 24 224 56 HOH HOH B . J 6 HOH 25 225 77 HOH HOH B . J 6 HOH 26 226 63 HOH HOH B . J 6 HOH 27 227 129 HOH HOH B . J 6 HOH 28 228 24 HOH HOH B . J 6 HOH 29 229 143 HOH HOH B . J 6 HOH 30 230 88 HOH HOH B . J 6 HOH 31 231 107 HOH HOH B . J 6 HOH 32 232 114 HOH HOH B . J 6 HOH 33 233 9 HOH HOH B . J 6 HOH 34 234 78 HOH HOH B . J 6 HOH 35 235 43 HOH HOH B . J 6 HOH 36 236 51 HOH HOH B . J 6 HOH 37 237 62 HOH HOH B . J 6 HOH 38 238 139 HOH HOH B . J 6 HOH 39 239 83 HOH HOH B . J 6 HOH 40 240 91 HOH HOH B . J 6 HOH 41 241 99 HOH HOH B . J 6 HOH 42 242 84 HOH HOH B . J 6 HOH 43 243 112 HOH HOH B . J 6 HOH 44 244 86 HOH HOH B . J 6 HOH 45 245 25 HOH HOH B . J 6 HOH 46 246 60 HOH HOH B . J 6 HOH 47 247 82 HOH HOH B . J 6 HOH 48 248 72 HOH HOH B . J 6 HOH 49 249 54 HOH HOH B . J 6 HOH 50 250 93 HOH HOH B . J 6 HOH 51 251 98 HOH HOH B . J 6 HOH 52 252 117 HOH HOH B . J 6 HOH 53 253 70 HOH HOH B . J 6 HOH 54 254 31 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1690 ? 1 MORE -31 ? 1 'SSA (A^2)' 10720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 375 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 64 ? A ASP 64 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? A ASP 65 ? A ASP 65 ? 1_555 106.0 ? 2 OD1 ? A ASP 64 ? A ASP 64 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? I HOH . ? A HOH 333 ? 1_555 80.9 ? 3 O ? A ASP 65 ? A ASP 65 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? I HOH . ? A HOH 333 ? 1_555 79.1 ? 4 OD1 ? A ASP 64 ? A ASP 64 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O21 ? B 85Y 7 ? B 85Y 7 ? 1_555 91.8 ? 5 O ? A ASP 65 ? A ASP 65 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O21 ? B 85Y 7 ? B 85Y 7 ? 1_555 86.9 ? 6 O ? I HOH . ? A HOH 333 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O21 ? B 85Y 7 ? B 85Y 7 ? 1_555 161.6 ? 7 OD1 ? A ASP 64 ? A ASP 64 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 222 ? 1_555 160.5 ? 8 O ? A ASP 65 ? A ASP 65 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 222 ? 1_555 93.1 ? 9 O ? I HOH . ? A HOH 333 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 222 ? 1_555 99.0 ? 10 O21 ? B 85Y 7 ? B 85Y 7 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 222 ? 1_555 93.5 ? 11 OD1 ? A ASP 64 ? A ASP 64 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 245 ? 1_555 89.3 ? 12 O ? A ASP 65 ? A ASP 65 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 245 ? 1_555 163.3 ? 13 O ? I HOH . ? A HOH 333 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 245 ? 1_555 97.0 ? 14 O21 ? B 85Y 7 ? B 85Y 7 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 245 ? 1_555 99.8 ? 15 O ? J HOH . ? B HOH 222 ? 1_555 NA ? D NA . ? A NA 202 ? 1_555 O ? J HOH . ? B HOH 245 ? 1_555 71.3 ? 16 O ? A VAL 90 ? A VAL 90 ? 1_555 MG ? F MG . ? A MG 204 ? 1_555 O ? A VAL 140 ? A VAL 140 ? 1_555 103.3 ? 17 O ? A ASN 108 ? A ASN 108 ? 1_555 MG ? G MG . ? A MG 205 ? 1_555 O ? A LEU 110 ? A LEU 110 ? 1_555 106.0 ? 18 O ? A ASN 108 ? A ASN 108 ? 1_555 MG ? G MG . ? A MG 205 ? 1_555 OG ? A SER 124 ? A SER 124 ? 1_555 138.0 ? 19 O ? A LEU 110 ? A LEU 110 ? 1_555 MG ? G MG . ? A MG 205 ? 1_555 OG ? A SER 124 ? A SER 124 ? 1_555 113.8 ? 20 O ? A ILE 132 ? A ILE 132 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? A THR 150 ? A THR 150 ? 1_555 92.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-11 2 'Structure model' 1 1 2017-10-18 3 'Structure model' 2 0 2017-11-15 4 'Structure model' 3 0 2018-08-22 5 'Structure model' 3 1 2019-11-20 6 'Structure model' 3 2 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Non-polymer description' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Atomic model' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Author supporting evidence' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_site 4 3 'Structure model' entity 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site 7 4 'Structure model' atom_site 8 4 'Structure model' pdbx_validate_rmsd_angle 9 4 'Structure model' struct_conn 10 5 'Structure model' pdbx_audit_support 11 6 'Structure model' chem_comp_atom 12 6 'Structure model' chem_comp_bond 13 6 'Structure model' database_2 14 6 'Structure model' pdbx_initial_refinement_model 15 6 'Structure model' pdbx_struct_conn_angle 16 6 'Structure model' struct_conn 17 6 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_atom_site.B_iso_or_equiv' 13 3 'Structure model' '_atom_site.Cartn_x' 14 3 'Structure model' '_atom_site.Cartn_y' 15 3 'Structure model' '_atom_site.Cartn_z' 16 3 'Structure model' '_atom_site.auth_atom_id' 17 3 'Structure model' '_atom_site.auth_comp_id' 18 3 'Structure model' '_atom_site.label_atom_id' 19 3 'Structure model' '_atom_site.label_comp_id' 20 3 'Structure model' '_atom_site.type_symbol' 21 3 'Structure model' '_chem_comp.formula' 22 3 'Structure model' '_chem_comp.id' 23 3 'Structure model' '_chem_comp.name' 24 3 'Structure model' '_entity.formula_weight' 25 3 'Structure model' '_entity.pdbx_description' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_site.details' 29 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_atom_site.B_iso_or_equiv' 31 4 'Structure model' '_atom_site.Cartn_x' 32 4 'Structure model' '_atom_site.Cartn_y' 33 4 'Structure model' '_atom_site.Cartn_z' 34 4 'Structure model' '_atom_site.auth_atom_id' 35 4 'Structure model' '_atom_site.label_atom_id' 36 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 37 5 'Structure model' '_pdbx_audit_support.funding_organization' 38 6 'Structure model' '_database_2.pdbx_DOI' 39 6 'Structure model' '_database_2.pdbx_database_accession' 40 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 41 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 42 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 43 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 44 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 45 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 46 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 47 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 48 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 49 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 50 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 51 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 52 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 53 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 54 6 'Structure model' '_pdbx_struct_conn_angle.value' 55 6 'Structure model' '_struct_conn.conn_type_id' 56 6 'Structure model' '_struct_conn.id' 57 6 'Structure model' '_struct_conn.pdbx_dist_value' 58 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 59 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 60 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 61 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 62 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 63 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 64 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 65 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 66 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 67 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 68 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 69 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 70 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 71 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 72 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 73 6 'Structure model' '_struct_conn_type.id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 360 ? ? O A HOH 385 ? ? 2.02 2 1 O B HOH 226 ? ? O B HOH 248 ? ? 2.03 3 1 O A HOH 328 ? ? O B HOH 218 ? ? 2.03 4 1 OD1 A ASP 49 ? ? O A HOH 301 ? ? 2.07 5 1 O B HOH 236 ? ? O B HOH 247 ? ? 2.09 6 1 O A HOH 348 ? ? O A HOH 377 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 346 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 243 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_884 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DA 5 ? ? "C3'" B DA 5 ? ? 1.378 1.419 -0.041 0.006 N 2 1 "O3'" B DG 17 ? ? "C3'" B DG 17 ? ? 1.381 1.419 -0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DG 2 ? ? "O3'" B DG 2 ? ? P B 85Y 3 ? ? 129.12 119.70 9.42 1.20 Y 2 1 "O3'" B DG 2 ? ? P B 85Y 3 ? ? "O5'" B 85Y 3 ? ? 82.49 104.00 -21.51 1.90 Y 3 1 "O3'" B DG 2 ? ? P B 85Y 3 ? ? OP1 B 85Y 3 ? ? 117.29 110.50 6.79 1.10 Y 4 1 "C3'" B 85Y 3 ? ? "O3'" B 85Y 3 ? ? P B DG 4 ? ? 111.55 119.70 -8.15 1.20 Y 5 1 "O3'" B 85Y 3 ? ? P B DG 4 ? ? OP2 B DG 4 ? ? 123.11 110.50 12.61 1.10 Y 6 1 "O3'" B DG 6 ? ? P B 85Y 7 ? ? OP2 B 85Y 7 ? ? 117.28 110.50 6.78 1.10 Y 7 1 "C3'" B 85Y 7 ? ? "O3'" B 85Y 7 ? ? P B 85Y 8 ? ? 129.16 119.70 9.46 1.20 Y 8 1 "C3'" B DA 9 ? ? "O3'" B DA 9 ? ? P B 85Y 10 ? ? 126.98 119.70 7.28 1.20 Y 9 1 "O3'" B DA 9 ? ? P B 85Y 10 ? ? OP2 B 85Y 10 ? ? 117.17 110.50 6.67 1.10 Y 10 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 110.38 108.30 2.08 0.30 N 11 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.19 108.30 1.89 0.30 N 12 1 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B 85Y 14 ? ? 139.31 119.70 19.61 1.20 Y 13 1 "C3'" B 85Y 15 ? ? "O3'" B 85Y 15 ? ? P B DA 16 ? ? 131.29 119.70 11.59 1.20 Y 14 1 "O3'" B 85Y 15 ? ? P B DA 16 ? ? OP2 B DA 16 ? ? 117.38 110.50 6.88 1.10 Y 15 1 "O3'" B DG 19 ? ? P B 85Y 20 ? ? "O5'" B 85Y 20 ? ? 121.94 104.00 17.94 1.90 Y 16 1 "O3'" B DG 19 ? ? P B 85Y 20 ? ? OP2 B 85Y 20 ? ? 117.67 110.50 7.17 1.10 Y 17 1 "O3'" B DG 19 ? ? P B 85Y 20 ? ? OP1 B 85Y 20 ? ? 78.31 105.20 -26.89 2.20 Y 18 1 "O3'" B 85Y 20 ? ? P B DC 21 ? ? "O5'" B DC 21 ? ? 150.86 104.00 46.86 1.90 Y 19 1 "O3'" B 85Y 20 ? ? P B DC 21 ? ? OP1 B DC 21 ? ? 70.91 105.20 -34.29 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 15 ? ? -96.55 -75.37 2 1 ASN A 36 ? ? -132.46 -126.60 3 1 GLN A 84 ? ? -109.96 -131.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A PHE 4 ? A PHE 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A PHE 6 ? A PHE 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 B ATD 23 ? B ATD 23 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 85Y C2 C N N 1 85Y C20 C N N 2 85Y C24 C Y N 3 85Y C30 C Y N 4 85Y C33 C Y N 5 85Y C4 C N N 6 85Y C5 C N N 7 85Y C23 C N N 8 85Y C25 C Y N 9 85Y C26 C Y N 10 85Y O4 O N N 11 85Y N3 N N N 12 85Y O2 O N N 13 85Y C6 C N N 14 85Y N1 N N N 15 85Y "C1'" C N R 16 85Y "O4'" O N N 17 85Y "C2'" C N N 18 85Y "C3'" C N S 19 85Y "O3'" O N N 20 85Y "C4'" C N R 21 85Y "C5'" C N N 22 85Y "O5'" O N N 23 85Y P P N N 24 85Y OP3 O N N 25 85Y OP2 O N N 26 85Y O21 O N N 27 85Y N22 N N N 28 85Y C27 C Y N 29 85Y C28 C Y N 30 85Y C29 C Y N 31 85Y C31 C Y N 32 85Y C32 C Y N 33 85Y H1 H N N 34 85Y H2 H N N 35 85Y H3 H N N 36 85Y H4 H N N 37 85Y H5 H N N 38 85Y H6 H N N 39 85Y H7 H N N 40 85Y H8 H N N 41 85Y H9 H N N 42 85Y H10 H N N 43 85Y H11 H N N 44 85Y H12 H N N 45 85Y H13 H N N 46 85Y H14 H N N 47 85Y H15 H N N 48 85Y HOP3 H N N 49 85Y HOP2 H N N 50 85Y H18 H N N 51 85Y H19 H N N 52 85Y H20 H N N 53 85Y H21 H N N 54 85Y H22 H N N 55 85Y OP1 O N N 56 ALA N N N N 57 ALA CA C N S 58 ALA C C N N 59 ALA O O N N 60 ALA CB C N N 61 ALA OXT O N N 62 ALA H H N N 63 ALA H2 H N N 64 ALA HA H N N 65 ALA HB1 H N N 66 ALA HB2 H N N 67 ALA HB3 H N N 68 ALA HXT H N N 69 ARG N N N N 70 ARG CA C N S 71 ARG C C N N 72 ARG O O N N 73 ARG CB C N N 74 ARG CG C N N 75 ARG CD C N N 76 ARG NE N N N 77 ARG CZ C N N 78 ARG NH1 N N N 79 ARG NH2 N N N 80 ARG OXT O N N 81 ARG H H N N 82 ARG H2 H N N 83 ARG HA H N N 84 ARG HB2 H N N 85 ARG HB3 H N N 86 ARG HG2 H N N 87 ARG HG3 H N N 88 ARG HD2 H N N 89 ARG HD3 H N N 90 ARG HE H N N 91 ARG HH11 H N N 92 ARG HH12 H N N 93 ARG HH21 H N N 94 ARG HH22 H N N 95 ARG HXT H N N 96 ASN N N N N 97 ASN CA C N S 98 ASN C C N N 99 ASN O O N N 100 ASN CB C N N 101 ASN CG C N N 102 ASN OD1 O N N 103 ASN ND2 N N N 104 ASN OXT O N N 105 ASN H H N N 106 ASN H2 H N N 107 ASN HA H N N 108 ASN HB2 H N N 109 ASN HB3 H N N 110 ASN HD21 H N N 111 ASN HD22 H N N 112 ASN HXT H N N 113 ASP N N N N 114 ASP CA C N S 115 ASP C C N N 116 ASP O O N N 117 ASP CB C N N 118 ASP CG C N N 119 ASP OD1 O N N 120 ASP OD2 O N N 121 ASP OXT O N N 122 ASP H H N N 123 ASP H2 H N N 124 ASP HA H N N 125 ASP HB2 H N N 126 ASP HB3 H N N 127 ASP HD2 H N N 128 ASP HXT H N N 129 ATD P P N N 130 ATD OP1 O N N 131 ATD OP2 O N N 132 ATD OP3 O N N 133 ATD "O5'" O N N 134 ATD "C5'" C N N 135 ATD "C4'" C N R 136 ATD "O4'" O N N 137 ATD "C3'" C N S 138 ATD "O3'" O N N 139 ATD "C2'" C N N 140 ATD "C1'" C N S 141 ATD N1 N N N 142 ATD C2 C N N 143 ATD O2 O N N 144 ATD N3 N N N 145 ATD C4 C N N 146 ATD O4 O N N 147 ATD C5 C N N 148 ATD C5M C N N 149 ATD C6 C N N 150 ATD HOP2 H N N 151 ATD HOP3 H N N 152 ATD "HO'5" H N N 153 ATD "H5'" H N N 154 ATD "H5''" H N N 155 ATD "H4'" H N N 156 ATD "H3'" H N N 157 ATD "H2'" H N N 158 ATD "H2''" H N N 159 ATD "H1'" H N N 160 ATD H3 H N N 161 ATD H71 H N N 162 ATD H72 H N N 163 ATD H73 H N N 164 ATD H6 H N N 165 CYS N N N N 166 CYS CA C N R 167 CYS C C N N 168 CYS O O N N 169 CYS CB C N N 170 CYS SG S N N 171 CYS OXT O N N 172 CYS H H N N 173 CYS H2 H N N 174 CYS HA H N N 175 CYS HB2 H N N 176 CYS HB3 H N N 177 CYS HG H N N 178 CYS HXT H N N 179 DA OP3 O N N 180 DA P P N N 181 DA OP1 O N N 182 DA OP2 O N N 183 DA "O5'" O N N 184 DA "C5'" C N N 185 DA "C4'" C N R 186 DA "O4'" O N N 187 DA "C3'" C N S 188 DA "O3'" O N N 189 DA "C2'" C N N 190 DA "C1'" C N R 191 DA N9 N Y N 192 DA C8 C Y N 193 DA N7 N Y N 194 DA C5 C Y N 195 DA C6 C Y N 196 DA N6 N N N 197 DA N1 N Y N 198 DA C2 C Y N 199 DA N3 N Y N 200 DA C4 C Y N 201 DA HOP3 H N N 202 DA HOP2 H N N 203 DA "H5'" H N N 204 DA "H5''" H N N 205 DA "H4'" H N N 206 DA "H3'" H N N 207 DA "HO3'" H N N 208 DA "H2'" H N N 209 DA "H2''" H N N 210 DA "H1'" H N N 211 DA H8 H N N 212 DA H61 H N N 213 DA H62 H N N 214 DA H2 H N N 215 DC OP3 O N N 216 DC P P N N 217 DC OP1 O N N 218 DC OP2 O N N 219 DC "O5'" O N N 220 DC "C5'" C N N 221 DC "C4'" C N R 222 DC "O4'" O N N 223 DC "C3'" C N S 224 DC "O3'" O N N 225 DC "C2'" C N N 226 DC "C1'" C N R 227 DC N1 N N N 228 DC C2 C N N 229 DC O2 O N N 230 DC N3 N N N 231 DC C4 C N N 232 DC N4 N N N 233 DC C5 C N N 234 DC C6 C N N 235 DC HOP3 H N N 236 DC HOP2 H N N 237 DC "H5'" H N N 238 DC "H5''" H N N 239 DC "H4'" H N N 240 DC "H3'" H N N 241 DC "HO3'" H N N 242 DC "H2'" H N N 243 DC "H2''" H N N 244 DC "H1'" H N N 245 DC H41 H N N 246 DC H42 H N N 247 DC H5 H N N 248 DC H6 H N N 249 DG OP3 O N N 250 DG P P N N 251 DG OP1 O N N 252 DG OP2 O N N 253 DG "O5'" O N N 254 DG "C5'" C N N 255 DG "C4'" C N R 256 DG "O4'" O N N 257 DG "C3'" C N S 258 DG "O3'" O N N 259 DG "C2'" C N N 260 DG "C1'" C N R 261 DG N9 N Y N 262 DG C8 C Y N 263 DG N7 N Y N 264 DG C5 C Y N 265 DG C6 C N N 266 DG O6 O N N 267 DG N1 N N N 268 DG C2 C N N 269 DG N2 N N N 270 DG N3 N N N 271 DG C4 C Y N 272 DG HOP3 H N N 273 DG HOP2 H N N 274 DG "H5'" H N N 275 DG "H5''" H N N 276 DG "H4'" H N N 277 DG "H3'" H N N 278 DG "HO3'" H N N 279 DG "H2'" H N N 280 DG "H2''" H N N 281 DG "H1'" H N N 282 DG H8 H N N 283 DG H1 H N N 284 DG H21 H N N 285 DG H22 H N N 286 GLN N N N N 287 GLN CA C N S 288 GLN C C N N 289 GLN O O N N 290 GLN CB C N N 291 GLN CG C N N 292 GLN CD C N N 293 GLN OE1 O N N 294 GLN NE2 N N N 295 GLN OXT O N N 296 GLN H H N N 297 GLN H2 H N N 298 GLN HA H N N 299 GLN HB2 H N N 300 GLN HB3 H N N 301 GLN HG2 H N N 302 GLN HG3 H N N 303 GLN HE21 H N N 304 GLN HE22 H N N 305 GLN HXT H N N 306 GLU N N N N 307 GLU CA C N S 308 GLU C C N N 309 GLU O O N N 310 GLU CB C N N 311 GLU CG C N N 312 GLU CD C N N 313 GLU OE1 O N N 314 GLU OE2 O N N 315 GLU OXT O N N 316 GLU H H N N 317 GLU H2 H N N 318 GLU HA H N N 319 GLU HB2 H N N 320 GLU HB3 H N N 321 GLU HG2 H N N 322 GLU HG3 H N N 323 GLU HE2 H N N 324 GLU HXT H N N 325 GLY N N N N 326 GLY CA C N N 327 GLY C C N N 328 GLY O O N N 329 GLY OXT O N N 330 GLY H H N N 331 GLY H2 H N N 332 GLY HA2 H N N 333 GLY HA3 H N N 334 GLY HXT H N N 335 HIS N N N N 336 HIS CA C N S 337 HIS C C N N 338 HIS O O N N 339 HIS CB C N N 340 HIS CG C Y N 341 HIS ND1 N Y N 342 HIS CD2 C Y N 343 HIS CE1 C Y N 344 HIS NE2 N Y N 345 HIS OXT O N N 346 HIS H H N N 347 HIS H2 H N N 348 HIS HA H N N 349 HIS HB2 H N N 350 HIS HB3 H N N 351 HIS HD1 H N N 352 HIS HD2 H N N 353 HIS HE1 H N N 354 HIS HE2 H N N 355 HIS HXT H N N 356 HOH O O N N 357 HOH H1 H N N 358 HOH H2 H N N 359 ILE N N N N 360 ILE CA C N S 361 ILE C C N N 362 ILE O O N N 363 ILE CB C N S 364 ILE CG1 C N N 365 ILE CG2 C N N 366 ILE CD1 C N N 367 ILE OXT O N N 368 ILE H H N N 369 ILE H2 H N N 370 ILE HA H N N 371 ILE HB H N N 372 ILE HG12 H N N 373 ILE HG13 H N N 374 ILE HG21 H N N 375 ILE HG22 H N N 376 ILE HG23 H N N 377 ILE HD11 H N N 378 ILE HD12 H N N 379 ILE HD13 H N N 380 ILE HXT H N N 381 LEU N N N N 382 LEU CA C N S 383 LEU C C N N 384 LEU O O N N 385 LEU CB C N N 386 LEU CG C N N 387 LEU CD1 C N N 388 LEU CD2 C N N 389 LEU OXT O N N 390 LEU H H N N 391 LEU H2 H N N 392 LEU HA H N N 393 LEU HB2 H N N 394 LEU HB3 H N N 395 LEU HG H N N 396 LEU HD11 H N N 397 LEU HD12 H N N 398 LEU HD13 H N N 399 LEU HD21 H N N 400 LEU HD22 H N N 401 LEU HD23 H N N 402 LEU HXT H N N 403 LYS N N N N 404 LYS CA C N S 405 LYS C C N N 406 LYS O O N N 407 LYS CB C N N 408 LYS CG C N N 409 LYS CD C N N 410 LYS CE C N N 411 LYS NZ N N N 412 LYS OXT O N N 413 LYS H H N N 414 LYS H2 H N N 415 LYS HA H N N 416 LYS HB2 H N N 417 LYS HB3 H N N 418 LYS HG2 H N N 419 LYS HG3 H N N 420 LYS HD2 H N N 421 LYS HD3 H N N 422 LYS HE2 H N N 423 LYS HE3 H N N 424 LYS HZ1 H N N 425 LYS HZ2 H N N 426 LYS HZ3 H N N 427 LYS HXT H N N 428 MET N N N N 429 MET CA C N S 430 MET C C N N 431 MET O O N N 432 MET CB C N N 433 MET CG C N N 434 MET SD S N N 435 MET CE C N N 436 MET OXT O N N 437 MET H H N N 438 MET H2 H N N 439 MET HA H N N 440 MET HB2 H N N 441 MET HB3 H N N 442 MET HG2 H N N 443 MET HG3 H N N 444 MET HE1 H N N 445 MET HE2 H N N 446 MET HE3 H N N 447 MET HXT H N N 448 MG MG MG N N 449 NA NA NA N N 450 PHE N N N N 451 PHE CA C N S 452 PHE C C N N 453 PHE O O N N 454 PHE CB C N N 455 PHE CG C Y N 456 PHE CD1 C Y N 457 PHE CD2 C Y N 458 PHE CE1 C Y N 459 PHE CE2 C Y N 460 PHE CZ C Y N 461 PHE OXT O N N 462 PHE H H N N 463 PHE H2 H N N 464 PHE HA H N N 465 PHE HB2 H N N 466 PHE HB3 H N N 467 PHE HD1 H N N 468 PHE HD2 H N N 469 PHE HE1 H N N 470 PHE HE2 H N N 471 PHE HZ H N N 472 PHE HXT H N N 473 PO4 P P N N 474 PO4 O1 O N N 475 PO4 O2 O N N 476 PO4 O3 O N N 477 PO4 O4 O N N 478 PRO N N N N 479 PRO CA C N S 480 PRO C C N N 481 PRO O O N N 482 PRO CB C N N 483 PRO CG C N N 484 PRO CD C N N 485 PRO OXT O N N 486 PRO H H N N 487 PRO HA H N N 488 PRO HB2 H N N 489 PRO HB3 H N N 490 PRO HG2 H N N 491 PRO HG3 H N N 492 PRO HD2 H N N 493 PRO HD3 H N N 494 PRO HXT H N N 495 SER N N N N 496 SER CA C N S 497 SER C C N N 498 SER O O N N 499 SER CB C N N 500 SER OG O N N 501 SER OXT O N N 502 SER H H N N 503 SER H2 H N N 504 SER HA H N N 505 SER HB2 H N N 506 SER HB3 H N N 507 SER HG H N N 508 SER HXT H N N 509 THR N N N N 510 THR CA C N S 511 THR C C N N 512 THR O O N N 513 THR CB C N R 514 THR OG1 O N N 515 THR CG2 C N N 516 THR OXT O N N 517 THR H H N N 518 THR H2 H N N 519 THR HA H N N 520 THR HB H N N 521 THR HG1 H N N 522 THR HG21 H N N 523 THR HG22 H N N 524 THR HG23 H N N 525 THR HXT H N N 526 TRP N N N N 527 TRP CA C N S 528 TRP C C N N 529 TRP O O N N 530 TRP CB C N N 531 TRP CG C Y N 532 TRP CD1 C Y N 533 TRP CD2 C Y N 534 TRP NE1 N Y N 535 TRP CE2 C Y N 536 TRP CE3 C Y N 537 TRP CZ2 C Y N 538 TRP CZ3 C Y N 539 TRP CH2 C Y N 540 TRP OXT O N N 541 TRP H H N N 542 TRP H2 H N N 543 TRP HA H N N 544 TRP HB2 H N N 545 TRP HB3 H N N 546 TRP HD1 H N N 547 TRP HE1 H N N 548 TRP HE3 H N N 549 TRP HZ2 H N N 550 TRP HZ3 H N N 551 TRP HH2 H N N 552 TRP HXT H N N 553 TYR N N N N 554 TYR CA C N S 555 TYR C C N N 556 TYR O O N N 557 TYR CB C N N 558 TYR CG C Y N 559 TYR CD1 C Y N 560 TYR CD2 C Y N 561 TYR CE1 C Y N 562 TYR CE2 C Y N 563 TYR CZ C Y N 564 TYR OH O N N 565 TYR OXT O N N 566 TYR H H N N 567 TYR H2 H N N 568 TYR HA H N N 569 TYR HB2 H N N 570 TYR HB3 H N N 571 TYR HD1 H N N 572 TYR HD2 H N N 573 TYR HE1 H N N 574 TYR HE2 H N N 575 TYR HH H N N 576 TYR HXT H N N 577 VAL N N N N 578 VAL CA C N S 579 VAL C C N N 580 VAL O O N N 581 VAL CB C N N 582 VAL CG1 C N N 583 VAL CG2 C N N 584 VAL OXT O N N 585 VAL H H N N 586 VAL H2 H N N 587 VAL HA H N N 588 VAL HB H N N 589 VAL HG11 H N N 590 VAL HG12 H N N 591 VAL HG13 H N N 592 VAL HG21 H N N 593 VAL HG22 H N N 594 VAL HG23 H N N 595 VAL HXT H N N 596 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 85Y C32 C33 doub Y N 1 85Y C32 C31 sing Y N 2 85Y C33 C27 sing Y N 3 85Y C31 C30 doub Y N 4 85Y C27 C28 doub Y N 5 85Y C27 C26 sing Y N 6 85Y C30 C26 sing Y N 7 85Y C28 C29 sing Y N 8 85Y C26 C25 doub Y N 9 85Y C29 C24 doub Y N 10 85Y C25 C24 sing Y N 11 85Y C24 C23 sing N N 12 85Y C23 N22 sing N N 13 85Y N22 C20 sing N N 14 85Y C20 O21 doub N N 15 85Y C20 C5 sing N N 16 85Y O4 C4 doub N N 17 85Y C4 C5 sing N N 18 85Y C4 N3 sing N N 19 85Y C5 C6 doub N N 20 85Y N3 C2 sing N N 21 85Y C6 N1 sing N N 22 85Y C2 N1 sing N N 23 85Y C2 O2 doub N N 24 85Y N1 "C1'" sing N N 25 85Y "C2'" "C1'" sing N N 26 85Y "C2'" "C3'" sing N N 27 85Y "C1'" "O4'" sing N N 28 85Y "O3'" "C3'" sing N N 29 85Y "C3'" "C4'" sing N N 30 85Y "O4'" "C4'" sing N N 31 85Y "C4'" "C5'" sing N N 32 85Y "O5'" "C5'" sing N N 33 85Y "O5'" P sing N N 34 85Y OP2 P sing N N 35 85Y P OP3 sing N N 36 85Y C30 H1 sing N N 37 85Y C33 H2 sing N N 38 85Y C23 H3 sing N N 39 85Y C23 H4 sing N N 40 85Y C25 H5 sing N N 41 85Y N3 H6 sing N N 42 85Y C6 H7 sing N N 43 85Y "C1'" H8 sing N N 44 85Y "C2'" H9 sing N N 45 85Y "C2'" H10 sing N N 46 85Y "C3'" H11 sing N N 47 85Y "O3'" H12 sing N N 48 85Y "C4'" H13 sing N N 49 85Y "C5'" H14 sing N N 50 85Y "C5'" H15 sing N N 51 85Y OP3 HOP3 sing N N 52 85Y OP2 HOP2 sing N N 53 85Y N22 H18 sing N N 54 85Y C28 H19 sing N N 55 85Y C29 H20 sing N N 56 85Y C31 H21 sing N N 57 85Y C32 H22 sing N N 58 85Y P OP1 doub N N 59 ALA N CA sing N N 60 ALA N H sing N N 61 ALA N H2 sing N N 62 ALA CA C sing N N 63 ALA CA CB sing N N 64 ALA CA HA sing N N 65 ALA C O doub N N 66 ALA C OXT sing N N 67 ALA CB HB1 sing N N 68 ALA CB HB2 sing N N 69 ALA CB HB3 sing N N 70 ALA OXT HXT sing N N 71 ARG N CA sing N N 72 ARG N H sing N N 73 ARG N H2 sing N N 74 ARG CA C sing N N 75 ARG CA CB sing N N 76 ARG CA HA sing N N 77 ARG C O doub N N 78 ARG C OXT sing N N 79 ARG CB CG sing N N 80 ARG CB HB2 sing N N 81 ARG CB HB3 sing N N 82 ARG CG CD sing N N 83 ARG CG HG2 sing N N 84 ARG CG HG3 sing N N 85 ARG CD NE sing N N 86 ARG CD HD2 sing N N 87 ARG CD HD3 sing N N 88 ARG NE CZ sing N N 89 ARG NE HE sing N N 90 ARG CZ NH1 sing N N 91 ARG CZ NH2 doub N N 92 ARG NH1 HH11 sing N N 93 ARG NH1 HH12 sing N N 94 ARG NH2 HH21 sing N N 95 ARG NH2 HH22 sing N N 96 ARG OXT HXT sing N N 97 ASN N CA sing N N 98 ASN N H sing N N 99 ASN N H2 sing N N 100 ASN CA C sing N N 101 ASN CA CB sing N N 102 ASN CA HA sing N N 103 ASN C O doub N N 104 ASN C OXT sing N N 105 ASN CB CG sing N N 106 ASN CB HB2 sing N N 107 ASN CB HB3 sing N N 108 ASN CG OD1 doub N N 109 ASN CG ND2 sing N N 110 ASN ND2 HD21 sing N N 111 ASN ND2 HD22 sing N N 112 ASN OXT HXT sing N N 113 ASP N CA sing N N 114 ASP N H sing N N 115 ASP N H2 sing N N 116 ASP CA C sing N N 117 ASP CA CB sing N N 118 ASP CA HA sing N N 119 ASP C O doub N N 120 ASP C OXT sing N N 121 ASP CB CG sing N N 122 ASP CB HB2 sing N N 123 ASP CB HB3 sing N N 124 ASP CG OD1 doub N N 125 ASP CG OD2 sing N N 126 ASP OD2 HD2 sing N N 127 ASP OXT HXT sing N N 128 ATD P OP1 doub N N 129 ATD P OP2 sing N N 130 ATD P OP3 sing N N 131 ATD P "O3'" sing N N 132 ATD OP2 HOP2 sing N N 133 ATD OP3 HOP3 sing N N 134 ATD "O5'" "C5'" sing N N 135 ATD "O5'" "HO'5" sing N N 136 ATD "C5'" "C4'" sing N N 137 ATD "C5'" "H5'" sing N N 138 ATD "C5'" "H5''" sing N N 139 ATD "C4'" "O4'" sing N N 140 ATD "C4'" "C3'" sing N N 141 ATD "C4'" "H4'" sing N N 142 ATD "O4'" "C1'" sing N N 143 ATD "C3'" "O3'" sing N N 144 ATD "C3'" "C2'" sing N N 145 ATD "C3'" "H3'" sing N N 146 ATD "C2'" "C1'" sing N N 147 ATD "C2'" "H2'" sing N N 148 ATD "C2'" "H2''" sing N N 149 ATD "C1'" N1 sing N N 150 ATD "C1'" "H1'" sing N N 151 ATD N1 C2 sing N N 152 ATD N1 C6 sing N N 153 ATD C2 O2 doub N N 154 ATD C2 N3 sing N N 155 ATD N3 C4 sing N N 156 ATD N3 H3 sing N N 157 ATD C4 O4 doub N N 158 ATD C4 C5 sing N N 159 ATD C5 C5M sing N N 160 ATD C5 C6 doub N N 161 ATD C5M H71 sing N N 162 ATD C5M H72 sing N N 163 ATD C5M H73 sing N N 164 ATD C6 H6 sing N N 165 CYS N CA sing N N 166 CYS N H sing N N 167 CYS N H2 sing N N 168 CYS CA C sing N N 169 CYS CA CB sing N N 170 CYS CA HA sing N N 171 CYS C O doub N N 172 CYS C OXT sing N N 173 CYS CB SG sing N N 174 CYS CB HB2 sing N N 175 CYS CB HB3 sing N N 176 CYS SG HG sing N N 177 CYS OXT HXT sing N N 178 DA OP3 P sing N N 179 DA OP3 HOP3 sing N N 180 DA P OP1 doub N N 181 DA P OP2 sing N N 182 DA P "O5'" sing N N 183 DA OP2 HOP2 sing N N 184 DA "O5'" "C5'" sing N N 185 DA "C5'" "C4'" sing N N 186 DA "C5'" "H5'" sing N N 187 DA "C5'" "H5''" sing N N 188 DA "C4'" "O4'" sing N N 189 DA "C4'" "C3'" sing N N 190 DA "C4'" "H4'" sing N N 191 DA "O4'" "C1'" sing N N 192 DA "C3'" "O3'" sing N N 193 DA "C3'" "C2'" sing N N 194 DA "C3'" "H3'" sing N N 195 DA "O3'" "HO3'" sing N N 196 DA "C2'" "C1'" sing N N 197 DA "C2'" "H2'" sing N N 198 DA "C2'" "H2''" sing N N 199 DA "C1'" N9 sing N N 200 DA "C1'" "H1'" sing N N 201 DA N9 C8 sing Y N 202 DA N9 C4 sing Y N 203 DA C8 N7 doub Y N 204 DA C8 H8 sing N N 205 DA N7 C5 sing Y N 206 DA C5 C6 sing Y N 207 DA C5 C4 doub Y N 208 DA C6 N6 sing N N 209 DA C6 N1 doub Y N 210 DA N6 H61 sing N N 211 DA N6 H62 sing N N 212 DA N1 C2 sing Y N 213 DA C2 N3 doub Y N 214 DA C2 H2 sing N N 215 DA N3 C4 sing Y N 216 DC OP3 P sing N N 217 DC OP3 HOP3 sing N N 218 DC P OP1 doub N N 219 DC P OP2 sing N N 220 DC P "O5'" sing N N 221 DC OP2 HOP2 sing N N 222 DC "O5'" "C5'" sing N N 223 DC "C5'" "C4'" sing N N 224 DC "C5'" "H5'" sing N N 225 DC "C5'" "H5''" sing N N 226 DC "C4'" "O4'" sing N N 227 DC "C4'" "C3'" sing N N 228 DC "C4'" "H4'" sing N N 229 DC "O4'" "C1'" sing N N 230 DC "C3'" "O3'" sing N N 231 DC "C3'" "C2'" sing N N 232 DC "C3'" "H3'" sing N N 233 DC "O3'" "HO3'" sing N N 234 DC "C2'" "C1'" sing N N 235 DC "C2'" "H2'" sing N N 236 DC "C2'" "H2''" sing N N 237 DC "C1'" N1 sing N N 238 DC "C1'" "H1'" sing N N 239 DC N1 C2 sing N N 240 DC N1 C6 sing N N 241 DC C2 O2 doub N N 242 DC C2 N3 sing N N 243 DC N3 C4 doub N N 244 DC C4 N4 sing N N 245 DC C4 C5 sing N N 246 DC N4 H41 sing N N 247 DC N4 H42 sing N N 248 DC C5 C6 doub N N 249 DC C5 H5 sing N N 250 DC C6 H6 sing N N 251 DG OP3 P sing N N 252 DG OP3 HOP3 sing N N 253 DG P OP1 doub N N 254 DG P OP2 sing N N 255 DG P "O5'" sing N N 256 DG OP2 HOP2 sing N N 257 DG "O5'" "C5'" sing N N 258 DG "C5'" "C4'" sing N N 259 DG "C5'" "H5'" sing N N 260 DG "C5'" "H5''" sing N N 261 DG "C4'" "O4'" sing N N 262 DG "C4'" "C3'" sing N N 263 DG "C4'" "H4'" sing N N 264 DG "O4'" "C1'" sing N N 265 DG "C3'" "O3'" sing N N 266 DG "C3'" "C2'" sing N N 267 DG "C3'" "H3'" sing N N 268 DG "O3'" "HO3'" sing N N 269 DG "C2'" "C1'" sing N N 270 DG "C2'" "H2'" sing N N 271 DG "C2'" "H2''" sing N N 272 DG "C1'" N9 sing N N 273 DG "C1'" "H1'" sing N N 274 DG N9 C8 sing Y N 275 DG N9 C4 sing Y N 276 DG C8 N7 doub Y N 277 DG C8 H8 sing N N 278 DG N7 C5 sing Y N 279 DG C5 C6 sing N N 280 DG C5 C4 doub Y N 281 DG C6 O6 doub N N 282 DG C6 N1 sing N N 283 DG N1 C2 sing N N 284 DG N1 H1 sing N N 285 DG C2 N2 sing N N 286 DG C2 N3 doub N N 287 DG N2 H21 sing N N 288 DG N2 H22 sing N N 289 DG N3 C4 sing N N 290 GLN N CA sing N N 291 GLN N H sing N N 292 GLN N H2 sing N N 293 GLN CA C sing N N 294 GLN CA CB sing N N 295 GLN CA HA sing N N 296 GLN C O doub N N 297 GLN C OXT sing N N 298 GLN CB CG sing N N 299 GLN CB HB2 sing N N 300 GLN CB HB3 sing N N 301 GLN CG CD sing N N 302 GLN CG HG2 sing N N 303 GLN CG HG3 sing N N 304 GLN CD OE1 doub N N 305 GLN CD NE2 sing N N 306 GLN NE2 HE21 sing N N 307 GLN NE2 HE22 sing N N 308 GLN OXT HXT sing N N 309 GLU N CA sing N N 310 GLU N H sing N N 311 GLU N H2 sing N N 312 GLU CA C sing N N 313 GLU CA CB sing N N 314 GLU CA HA sing N N 315 GLU C O doub N N 316 GLU C OXT sing N N 317 GLU CB CG sing N N 318 GLU CB HB2 sing N N 319 GLU CB HB3 sing N N 320 GLU CG CD sing N N 321 GLU CG HG2 sing N N 322 GLU CG HG3 sing N N 323 GLU CD OE1 doub N N 324 GLU CD OE2 sing N N 325 GLU OE2 HE2 sing N N 326 GLU OXT HXT sing N N 327 GLY N CA sing N N 328 GLY N H sing N N 329 GLY N H2 sing N N 330 GLY CA C sing N N 331 GLY CA HA2 sing N N 332 GLY CA HA3 sing N N 333 GLY C O doub N N 334 GLY C OXT sing N N 335 GLY OXT HXT sing N N 336 HIS N CA sing N N 337 HIS N H sing N N 338 HIS N H2 sing N N 339 HIS CA C sing N N 340 HIS CA CB sing N N 341 HIS CA HA sing N N 342 HIS C O doub N N 343 HIS C OXT sing N N 344 HIS CB CG sing N N 345 HIS CB HB2 sing N N 346 HIS CB HB3 sing N N 347 HIS CG ND1 sing Y N 348 HIS CG CD2 doub Y N 349 HIS ND1 CE1 doub Y N 350 HIS ND1 HD1 sing N N 351 HIS CD2 NE2 sing Y N 352 HIS CD2 HD2 sing N N 353 HIS CE1 NE2 sing Y N 354 HIS CE1 HE1 sing N N 355 HIS NE2 HE2 sing N N 356 HIS OXT HXT sing N N 357 HOH O H1 sing N N 358 HOH O H2 sing N N 359 ILE N CA sing N N 360 ILE N H sing N N 361 ILE N H2 sing N N 362 ILE CA C sing N N 363 ILE CA CB sing N N 364 ILE CA HA sing N N 365 ILE C O doub N N 366 ILE C OXT sing N N 367 ILE CB CG1 sing N N 368 ILE CB CG2 sing N N 369 ILE CB HB sing N N 370 ILE CG1 CD1 sing N N 371 ILE CG1 HG12 sing N N 372 ILE CG1 HG13 sing N N 373 ILE CG2 HG21 sing N N 374 ILE CG2 HG22 sing N N 375 ILE CG2 HG23 sing N N 376 ILE CD1 HD11 sing N N 377 ILE CD1 HD12 sing N N 378 ILE CD1 HD13 sing N N 379 ILE OXT HXT sing N N 380 LEU N CA sing N N 381 LEU N H sing N N 382 LEU N H2 sing N N 383 LEU CA C sing N N 384 LEU CA CB sing N N 385 LEU CA HA sing N N 386 LEU C O doub N N 387 LEU C OXT sing N N 388 LEU CB CG sing N N 389 LEU CB HB2 sing N N 390 LEU CB HB3 sing N N 391 LEU CG CD1 sing N N 392 LEU CG CD2 sing N N 393 LEU CG HG sing N N 394 LEU CD1 HD11 sing N N 395 LEU CD1 HD12 sing N N 396 LEU CD1 HD13 sing N N 397 LEU CD2 HD21 sing N N 398 LEU CD2 HD22 sing N N 399 LEU CD2 HD23 sing N N 400 LEU OXT HXT sing N N 401 LYS N CA sing N N 402 LYS N H sing N N 403 LYS N H2 sing N N 404 LYS CA C sing N N 405 LYS CA CB sing N N 406 LYS CA HA sing N N 407 LYS C O doub N N 408 LYS C OXT sing N N 409 LYS CB CG sing N N 410 LYS CB HB2 sing N N 411 LYS CB HB3 sing N N 412 LYS CG CD sing N N 413 LYS CG HG2 sing N N 414 LYS CG HG3 sing N N 415 LYS CD CE sing N N 416 LYS CD HD2 sing N N 417 LYS CD HD3 sing N N 418 LYS CE NZ sing N N 419 LYS CE HE2 sing N N 420 LYS CE HE3 sing N N 421 LYS NZ HZ1 sing N N 422 LYS NZ HZ2 sing N N 423 LYS NZ HZ3 sing N N 424 LYS OXT HXT sing N N 425 MET N CA sing N N 426 MET N H sing N N 427 MET N H2 sing N N 428 MET CA C sing N N 429 MET CA CB sing N N 430 MET CA HA sing N N 431 MET C O doub N N 432 MET C OXT sing N N 433 MET CB CG sing N N 434 MET CB HB2 sing N N 435 MET CB HB3 sing N N 436 MET CG SD sing N N 437 MET CG HG2 sing N N 438 MET CG HG3 sing N N 439 MET SD CE sing N N 440 MET CE HE1 sing N N 441 MET CE HE2 sing N N 442 MET CE HE3 sing N N 443 MET OXT HXT sing N N 444 PHE N CA sing N N 445 PHE N H sing N N 446 PHE N H2 sing N N 447 PHE CA C sing N N 448 PHE CA CB sing N N 449 PHE CA HA sing N N 450 PHE C O doub N N 451 PHE C OXT sing N N 452 PHE CB CG sing N N 453 PHE CB HB2 sing N N 454 PHE CB HB3 sing N N 455 PHE CG CD1 doub Y N 456 PHE CG CD2 sing Y N 457 PHE CD1 CE1 sing Y N 458 PHE CD1 HD1 sing N N 459 PHE CD2 CE2 doub Y N 460 PHE CD2 HD2 sing N N 461 PHE CE1 CZ doub Y N 462 PHE CE1 HE1 sing N N 463 PHE CE2 CZ sing Y N 464 PHE CE2 HE2 sing N N 465 PHE CZ HZ sing N N 466 PHE OXT HXT sing N N 467 PO4 P O1 doub N N 468 PO4 P O2 sing N N 469 PO4 P O3 sing N N 470 PO4 P O4 sing N N 471 PRO N CA sing N N 472 PRO N CD sing N N 473 PRO N H sing N N 474 PRO CA C sing N N 475 PRO CA CB sing N N 476 PRO CA HA sing N N 477 PRO C O doub N N 478 PRO C OXT sing N N 479 PRO CB CG sing N N 480 PRO CB HB2 sing N N 481 PRO CB HB3 sing N N 482 PRO CG CD sing N N 483 PRO CG HG2 sing N N 484 PRO CG HG3 sing N N 485 PRO CD HD2 sing N N 486 PRO CD HD3 sing N N 487 PRO OXT HXT sing N N 488 SER N CA sing N N 489 SER N H sing N N 490 SER N H2 sing N N 491 SER CA C sing N N 492 SER CA CB sing N N 493 SER CA HA sing N N 494 SER C O doub N N 495 SER C OXT sing N N 496 SER CB OG sing N N 497 SER CB HB2 sing N N 498 SER CB HB3 sing N N 499 SER OG HG sing N N 500 SER OXT HXT sing N N 501 THR N CA sing N N 502 THR N H sing N N 503 THR N H2 sing N N 504 THR CA C sing N N 505 THR CA CB sing N N 506 THR CA HA sing N N 507 THR C O doub N N 508 THR C OXT sing N N 509 THR CB OG1 sing N N 510 THR CB CG2 sing N N 511 THR CB HB sing N N 512 THR OG1 HG1 sing N N 513 THR CG2 HG21 sing N N 514 THR CG2 HG22 sing N N 515 THR CG2 HG23 sing N N 516 THR OXT HXT sing N N 517 TRP N CA sing N N 518 TRP N H sing N N 519 TRP N H2 sing N N 520 TRP CA C sing N N 521 TRP CA CB sing N N 522 TRP CA HA sing N N 523 TRP C O doub N N 524 TRP C OXT sing N N 525 TRP CB CG sing N N 526 TRP CB HB2 sing N N 527 TRP CB HB3 sing N N 528 TRP CG CD1 doub Y N 529 TRP CG CD2 sing Y N 530 TRP CD1 NE1 sing Y N 531 TRP CD1 HD1 sing N N 532 TRP CD2 CE2 doub Y N 533 TRP CD2 CE3 sing Y N 534 TRP NE1 CE2 sing Y N 535 TRP NE1 HE1 sing N N 536 TRP CE2 CZ2 sing Y N 537 TRP CE3 CZ3 doub Y N 538 TRP CE3 HE3 sing N N 539 TRP CZ2 CH2 doub Y N 540 TRP CZ2 HZ2 sing N N 541 TRP CZ3 CH2 sing Y N 542 TRP CZ3 HZ3 sing N N 543 TRP CH2 HH2 sing N N 544 TRP OXT HXT sing N N 545 TYR N CA sing N N 546 TYR N H sing N N 547 TYR N H2 sing N N 548 TYR CA C sing N N 549 TYR CA CB sing N N 550 TYR CA HA sing N N 551 TYR C O doub N N 552 TYR C OXT sing N N 553 TYR CB CG sing N N 554 TYR CB HB2 sing N N 555 TYR CB HB3 sing N N 556 TYR CG CD1 doub Y N 557 TYR CG CD2 sing Y N 558 TYR CD1 CE1 sing Y N 559 TYR CD1 HD1 sing N N 560 TYR CD2 CE2 doub Y N 561 TYR CD2 HD2 sing N N 562 TYR CE1 CZ doub Y N 563 TYR CE1 HE1 sing N N 564 TYR CE2 CZ sing Y N 565 TYR CE2 HE2 sing N N 566 TYR CZ OH sing N N 567 TYR OH HH sing N N 568 TYR OXT HXT sing N N 569 VAL N CA sing N N 570 VAL N H sing N N 571 VAL N H2 sing N N 572 VAL CA C sing N N 573 VAL CA CB sing N N 574 VAL CA HA sing N N 575 VAL C O doub N N 576 VAL C OXT sing N N 577 VAL CB CG1 sing N N 578 VAL CB CG2 sing N N 579 VAL CB HB sing N N 580 VAL CG1 HG11 sing N N 581 VAL CG1 HG12 sing N N 582 VAL CG1 HG13 sing N N 583 VAL CG2 HG21 sing N N 584 VAL CG2 HG22 sing N N 585 VAL CG2 HG23 sing N N 586 VAL OXT HXT sing N N 587 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5UC6 'double helix' 5UC6 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 B DG 22 1_555 -0.179 -0.183 0.508 3.097 -3.220 -1.135 1 B_DC1:DG22_B B 1 ? B 22 ? 19 1 1 B DG 2 1_555 B DC 21 1_555 0.639 -0.215 0.333 2.991 0.423 -2.490 2 B_DG2:DC21_B B 2 ? B 21 ? 19 1 1 B DG 4 1_555 B DG 19 1_555 5.504 -0.110 0.530 26.127 13.108 -113.973 3 B_DG4:DG19_B B 4 ? B 19 ? 7 4 1 B DA 5 1_555 B DA 18 1_555 -5.691 -5.009 0.312 -2.318 -23.807 -176.296 4 B_DA5:DA18_B B 5 ? B 18 ? 2 8 1 B DG 6 1_555 B DG 17 1_555 1.143 -1.117 0.196 13.950 18.538 -172.278 5 B_DG6:DG17_B B 6 ? B 17 ? 3 2 1 B 85Y 8 1_555 B DA 16 1_555 -0.198 -0.090 0.294 -1.494 -4.957 -1.991 6 B_85Y8:DA16_B B 8 ? B 16 ? 20 1 1 B DA 9 1_555 B 85Y 15 1_555 0.145 -0.099 0.046 -11.219 -17.672 -10.897 7 B_DA9:85Y15_B B 9 ? B 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 B DG 22 1_555 B DG 2 1_555 B DC 21 1_555 -0.008 5.111 3.739 2.034 1.283 -4.495 -66.112 13.615 2.015 -15.019 23.813 -5.097 1 BB_DC1DG2:DC21DG22_BB B 1 ? B 22 ? B 2 ? B 21 ? 1 B DA 5 1_555 B DA 18 1_555 B DG 6 1_555 B DG 17 1_555 2.158 -3.804 4.821 5.848 -3.748 2.473 0.261 29.779 5.264 -38.004 -59.290 7.372 2 BB_DA5DG6:DG17DA18_BB B 5 ? B 18 ? B 6 ? B 17 ? 1 B DG 6 1_555 B DG 17 1_555 B 85Y 8 1_555 B DA 16 1_555 -0.237 -0.694 2.977 -7.600 -1.547 -142.238 0.374 -0.161 2.967 0.817 -4.015 -142.328 3 BB_DG685Y8:DA16DG17_BB B 6 ? B 17 ? B 8 ? B 16 ? 1 B 85Y 8 1_555 B DA 16 1_555 B DA 9 1_555 B 85Y 15 1_555 -0.077 5.067 3.693 0.450 -10.495 -7.366 0.453 0.646 6.268 55.006 2.357 -12.823 4 BB_85Y8DA9:85Y15DA16_BB B 8 ? B 16 ? B 9 ? B 15 ? # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 'PHOSPHATE ION' PO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ILA _pdbx_initial_refinement_model.details ? #