HEADER OXIDOREDUCTASE 22-DEC-16 5UCD TITLE BENZALDEHYDE DEHYDROGENASE, A CLASS 3 ALDEHYDE DEHYDROGENASE, WITH TITLE 2 BOUND NADP+ AND BENZOATE ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)-DEPENDENT BENZALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.28,1.2.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS DEHYDROGENASE, OXIDOREDUCTASE, NADP+, CLASS 3 ALDEHYDE DEHYDROGENASE, KEYWDS 2 ADDUCT, COVALENT CATALYSIS, MANDELATE RACEMASE PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR M.P.D.ZAHNISER,S.PRASAD,M.M.KNEEN,C.A.KREINBRING,G.A.PETSKO,D.RINGE, AUTHOR 2 M.J.MCLEISH REVDAT 5 04-OCT-23 5UCD 1 REMARK REVDAT 4 27-NOV-19 5UCD 1 REMARK REVDAT 3 27-SEP-17 5UCD 1 REMARK REVDAT 2 03-MAY-17 5UCD 1 JRNL REVDAT 1 12-APR-17 5UCD 0 JRNL AUTH M.P.D.ZAHNISER,S.PRASAD,M.M.KNEEN,C.A.KREINBRING,G.A.PETSKO, JRNL AUTH 2 D.RINGE,M.J.MCLEISH JRNL TITL STRUCTURE AND MECHANISM OF BENZALDEHYDE DEHYDROGENASE FROM JRNL TITL 2 PSEUDOMONAS PUTIDA ATCC 12633, A MEMBER OF THE CLASS 3 JRNL TITL 3 ALDEHYDE DEHYDROGENASE SUPERFAMILY. JRNL REF PROTEIN ENG. DES. SEL. V. 30 271 2017 JRNL REFN ESSN 1741-0134 JRNL PMID 28338942 JRNL DOI 10.1093/PROTEIN/GZX015 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 56464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8690 - 6.1696 1.00 2874 158 0.1473 0.1893 REMARK 3 2 6.1696 - 4.9014 1.00 2748 157 0.1495 0.1815 REMARK 3 3 4.9014 - 4.2831 1.00 2752 138 0.1253 0.1486 REMARK 3 4 4.2831 - 3.8920 1.00 2703 140 0.1471 0.1808 REMARK 3 5 3.8920 - 3.6134 1.00 2702 147 0.1646 0.2235 REMARK 3 6 3.6134 - 3.4005 1.00 2710 137 0.1879 0.2342 REMARK 3 7 3.4005 - 3.2304 1.00 2708 133 0.1958 0.2445 REMARK 3 8 3.2304 - 3.0898 1.00 2692 133 0.2144 0.2633 REMARK 3 9 3.0898 - 2.9709 1.00 2673 149 0.2266 0.2842 REMARK 3 10 2.9709 - 2.8685 1.00 2678 143 0.2312 0.2604 REMARK 3 11 2.8685 - 2.7788 1.00 2688 135 0.2511 0.2903 REMARK 3 12 2.7788 - 2.6994 1.00 2673 144 0.2509 0.2997 REMARK 3 13 2.6994 - 2.6284 1.00 2670 122 0.2390 0.3183 REMARK 3 14 2.6284 - 2.5643 1.00 2671 142 0.2435 0.2692 REMARK 3 15 2.5643 - 2.5060 0.99 2635 145 0.2471 0.2897 REMARK 3 16 2.5060 - 2.4527 0.99 2636 142 0.2585 0.2816 REMARK 3 17 2.4527 - 2.4036 0.98 2612 151 0.2543 0.3025 REMARK 3 18 2.4036 - 2.3583 0.98 2629 145 0.2599 0.3226 REMARK 3 19 2.3583 - 2.3162 0.98 2618 119 0.2668 0.3902 REMARK 3 20 2.3162 - 2.2769 0.97 2566 146 0.2794 0.3428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6951 REMARK 3 ANGLE : 0.796 9492 REMARK 3 CHIRALITY : 0.031 1100 REMARK 3 PLANARITY : 0.004 1216 REMARK 3 DIHEDRAL : 14.154 2538 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR AND MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3LV1 REMARK 200 REMARK 200 REMARK: DIAMOND-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 5% (V/V) REMARK 280 ISOPROPANOL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 97.50150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.53250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.26625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 97.50150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.79875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.79875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.50150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.26625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 97.50150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.53250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 97.50150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.53250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 97.50150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 96.79875 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 32.26625 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 97.50150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 32.26625 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 96.79875 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 97.50150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 97.50150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.53250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 ILE A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 ILE B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OAC ZBZ A 249 C5N NAP A 501 1.96 REMARK 500 N GLU A 146 O2X NAP A 501 2.00 REMARK 500 O ASP B 56 NH2 ARG B 317 2.16 REMARK 500 OE2 GLU B 328 O HOH B 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 15.52 -143.21 REMARK 500 GLU A 68 -82.70 -116.32 REMARK 500 TYR A 167 -73.59 -105.59 REMARK 500 LEU A 216 -153.64 -114.34 REMARK 500 SER A 310 -41.67 67.37 REMARK 500 PRO A 332 -8.26 -59.46 REMARK 500 SER A 335 -61.81 -107.52 REMARK 500 PRO A 341 29.48 -73.81 REMARK 500 MET A 396 -38.39 69.08 REMARK 500 HIS A 418 141.87 88.94 REMARK 500 GLU B 68 -73.20 -112.01 REMARK 500 TYR B 167 -62.47 -101.72 REMARK 500 LEU B 216 -151.98 -117.96 REMARK 500 MET B 396 -37.64 67.99 REMARK 500 HIS B 418 144.02 93.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 501 DBREF 5UCD A 1 436 UNP Q84DC3 MDLD_PSEPU 1 436 DBREF 5UCD B 1 436 UNP Q84DC3 MDLD_PSEPU 1 436 SEQADV 5UCD HIS A -20 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -19 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -18 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -17 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -16 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -15 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -14 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -13 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -12 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -11 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD SER A -10 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD SER A -9 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD GLY A -8 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A -7 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ILE A -6 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP A -5 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP A -4 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP A -3 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP A -2 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD LYS A -1 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS A 0 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ZBZ A 249 UNP Q84DC3 CYS 249 MODIFIED RESIDUE SEQADV 5UCD HIS B -20 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -19 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -18 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -17 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -16 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -15 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -14 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -13 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -12 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -11 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD SER B -10 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD SER B -9 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD GLY B -8 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B -7 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ILE B -6 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP B -5 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP B -4 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP B -3 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ASP B -2 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD LYS B -1 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD HIS B 0 UNP Q84DC3 EXPRESSION TAG SEQADV 5UCD ZBZ B 249 UNP Q84DC3 CYS 249 MODIFIED RESIDUE SEQRES 1 A 457 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 457 HIS ILE ASP ASP ASP ASP LYS HIS MET ASN TYR LEU SER SEQRES 3 A 457 PRO ALA LYS ILE ASP SER LEU PHE SER ALA GLN LYS ALA SEQRES 4 A 457 TYR PHE ALA THR ARG ALA THR ALA ASP VAL GLY PHE ARG SEQRES 5 A 457 LYS GLN SER LEU GLU ARG LEU LYS GLU ALA VAL ILE ASN SEQRES 6 A 457 ASN LYS GLU ALA LEU TYR SER ALA LEU ALA GLU ASP LEU SEQRES 7 A 457 GLY LYS PRO LYS ASP VAL VAL ASP LEU ALA GLU ILE GLY SEQRES 8 A 457 ALA VAL LEU HIS GLU ILE ASP PHE ALA LEU ALA HIS LEU SEQRES 9 A 457 ASP GLU TRP VAL ALA PRO VAL SER VAL PRO SER PRO ASP SEQRES 10 A 457 ILE ILE ALA PRO SER GLU CYS TYR VAL VAL GLN GLU PRO SEQRES 11 A 457 TYR GLY VAL THR TYR ILE ILE GLY PRO PHE ASN TYR PRO SEQRES 12 A 457 VAL ASN LEU THR LEU THR PRO LEU ILE GLY ALA ILE ILE SEQRES 13 A 457 GLY GLY ASN THR CYS ILE ILE LYS PRO SER GLU THR THR SEQRES 14 A 457 PRO GLU THR SER ALA VAL ILE GLU LYS ILE ILE ALA GLU SEQRES 15 A 457 ALA PHE ALA PRO GLU TYR VAL ALA VAL ILE GLN GLY GLY SEQRES 16 A 457 ARG ASP GLU ASN SER HIS LEU LEU SER LEU PRO PHE ASP SEQRES 17 A 457 PHE ILE PHE PHE THR GLY SER PRO ASN VAL GLY LYS VAL SEQRES 18 A 457 VAL MET GLN ALA ALA ALA LYS HIS LEU THR PRO VAL VAL SEQRES 19 A 457 LEU GLU LEU GLY GLY LYS CYS PRO LEU ILE VAL LEU PRO SEQRES 20 A 457 ASP ALA ASP LEU ASP GLN THR VAL ASN GLN LEU MET PHE SEQRES 21 A 457 GLY LYS PHE ILE ASN SER GLY GLN THR ZBZ ILE ALA PRO SEQRES 22 A 457 ASP TYR LEU TYR VAL HIS TYR SER VAL LYS ASP ALA LEU SEQRES 23 A 457 LEU GLU ARG LEU VAL GLU ARG VAL LYS THR GLU LEU PRO SEQRES 24 A 457 GLU ILE ASN SER THR GLY LYS LEU VAL THR GLU ARG GLN SEQRES 25 A 457 VAL GLN ARG LEU VAL SER LEU LEU GLU ALA THR GLN GLY SEQRES 26 A 457 GLN VAL LEU VAL GLY SER GLN ALA ASP VAL SER LYS ARG SEQRES 27 A 457 ALA LEU SER ALA THR VAL VAL ASP GLY VAL GLU TRP ASN SEQRES 28 A 457 ASP PRO LEU MET SER GLU GLU LEU PHE GLY PRO ILE LEU SEQRES 29 A 457 PRO VAL LEU GLU PHE ASP SER VAL ARG THR ALA ILE ASP SEQRES 30 A 457 GLN VAL ASN LYS HIS HIS PRO LYS PRO LEU ALA VAL TYR SEQRES 31 A 457 VAL PHE GLY LYS ASP MET ASP VAL ALA LYS GLY ILE ILE SEQRES 32 A 457 ASN GLN ILE GLN SER GLY ASP ALA GLN VAL ASN GLY VAL SEQRES 33 A 457 MET LEU HIS ALA PHE SER PRO TYR LEU PRO PHE GLY GLY SEQRES 34 A 457 ILE GLY ALA SER GLY MET GLY GLU TYR HIS GLY HIS PHE SEQRES 35 A 457 SER TYR LEU THR PHE THR HIS LYS LYS SER VAL ARG ILE SEQRES 36 A 457 VAL PRO SEQRES 1 B 457 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 457 HIS ILE ASP ASP ASP ASP LYS HIS MET ASN TYR LEU SER SEQRES 3 B 457 PRO ALA LYS ILE ASP SER LEU PHE SER ALA GLN LYS ALA SEQRES 4 B 457 TYR PHE ALA THR ARG ALA THR ALA ASP VAL GLY PHE ARG SEQRES 5 B 457 LYS GLN SER LEU GLU ARG LEU LYS GLU ALA VAL ILE ASN SEQRES 6 B 457 ASN LYS GLU ALA LEU TYR SER ALA LEU ALA GLU ASP LEU SEQRES 7 B 457 GLY LYS PRO LYS ASP VAL VAL ASP LEU ALA GLU ILE GLY SEQRES 8 B 457 ALA VAL LEU HIS GLU ILE ASP PHE ALA LEU ALA HIS LEU SEQRES 9 B 457 ASP GLU TRP VAL ALA PRO VAL SER VAL PRO SER PRO ASP SEQRES 10 B 457 ILE ILE ALA PRO SER GLU CYS TYR VAL VAL GLN GLU PRO SEQRES 11 B 457 TYR GLY VAL THR TYR ILE ILE GLY PRO PHE ASN TYR PRO SEQRES 12 B 457 VAL ASN LEU THR LEU THR PRO LEU ILE GLY ALA ILE ILE SEQRES 13 B 457 GLY GLY ASN THR CYS ILE ILE LYS PRO SER GLU THR THR SEQRES 14 B 457 PRO GLU THR SER ALA VAL ILE GLU LYS ILE ILE ALA GLU SEQRES 15 B 457 ALA PHE ALA PRO GLU TYR VAL ALA VAL ILE GLN GLY GLY SEQRES 16 B 457 ARG ASP GLU ASN SER HIS LEU LEU SER LEU PRO PHE ASP SEQRES 17 B 457 PHE ILE PHE PHE THR GLY SER PRO ASN VAL GLY LYS VAL SEQRES 18 B 457 VAL MET GLN ALA ALA ALA LYS HIS LEU THR PRO VAL VAL SEQRES 19 B 457 LEU GLU LEU GLY GLY LYS CYS PRO LEU ILE VAL LEU PRO SEQRES 20 B 457 ASP ALA ASP LEU ASP GLN THR VAL ASN GLN LEU MET PHE SEQRES 21 B 457 GLY LYS PHE ILE ASN SER GLY GLN THR ZBZ ILE ALA PRO SEQRES 22 B 457 ASP TYR LEU TYR VAL HIS TYR SER VAL LYS ASP ALA LEU SEQRES 23 B 457 LEU GLU ARG LEU VAL GLU ARG VAL LYS THR GLU LEU PRO SEQRES 24 B 457 GLU ILE ASN SER THR GLY LYS LEU VAL THR GLU ARG GLN SEQRES 25 B 457 VAL GLN ARG LEU VAL SER LEU LEU GLU ALA THR GLN GLY SEQRES 26 B 457 GLN VAL LEU VAL GLY SER GLN ALA ASP VAL SER LYS ARG SEQRES 27 B 457 ALA LEU SER ALA THR VAL VAL ASP GLY VAL GLU TRP ASN SEQRES 28 B 457 ASP PRO LEU MET SER GLU GLU LEU PHE GLY PRO ILE LEU SEQRES 29 B 457 PRO VAL LEU GLU PHE ASP SER VAL ARG THR ALA ILE ASP SEQRES 30 B 457 GLN VAL ASN LYS HIS HIS PRO LYS PRO LEU ALA VAL TYR SEQRES 31 B 457 VAL PHE GLY LYS ASP MET ASP VAL ALA LYS GLY ILE ILE SEQRES 32 B 457 ASN GLN ILE GLN SER GLY ASP ALA GLN VAL ASN GLY VAL SEQRES 33 B 457 MET LEU HIS ALA PHE SER PRO TYR LEU PRO PHE GLY GLY SEQRES 34 B 457 ILE GLY ALA SER GLY MET GLY GLU TYR HIS GLY HIS PHE SEQRES 35 B 457 SER TYR LEU THR PHE THR HIS LYS LYS SER VAL ARG ILE SEQRES 36 B 457 VAL PRO HET ZBZ A 249 14 HET ZBZ B 249 14 HET NAP A 501 48 HET NAP B 501 48 HETNAM ZBZ S-(PHENYLCARBONYL)-L-CYSTEINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 1 ZBZ 2(C10 H11 N O3 S) FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *229(H2 O) HELIX 1 AA1 SER A 5 THR A 22 1 18 HELIX 2 AA2 ASP A 27 ASN A 44 1 18 HELIX 3 AA3 ASN A 45 GLY A 58 1 14 HELIX 4 AA4 PRO A 60 GLU A 68 1 9 HELIX 5 AA5 GLU A 68 VAL A 87 1 20 HELIX 6 AA6 PRO A 95 ALA A 99 5 5 HELIX 7 AA7 VAL A 123 GLY A 137 1 15 HELIX 8 AA8 THR A 148 PHE A 163 1 16 HELIX 9 AA9 GLY A 174 LEU A 182 1 9 HELIX 10 AB1 SER A 194 LYS A 207 1 14 HELIX 11 AB2 ASP A 229 ILE A 243 1 15 HELIX 12 AB3 ASN A 244 GLN A 247 5 4 HELIX 13 AB4 TYR A 259 LEU A 277 1 19 HELIX 14 AB5 THR A 288 THR A 302 1 15 HELIX 15 AB6 VAL A 314 ARG A 317 5 4 HELIX 16 AB7 SER A 350 HIS A 362 1 13 HELIX 17 AB8 ASP A 374 ASN A 383 1 10 HELIX 18 AB9 MET A 396 SER A 401 5 6 HELIX 19 AC1 ILE A 409 ALA A 411 5 3 HELIX 20 AC2 GLY A 419 PHE A 426 1 8 HELIX 21 AC3 SER B 5 THR B 22 1 18 HELIX 22 AC4 ASP B 27 ASN B 45 1 19 HELIX 23 AC5 ASN B 45 GLY B 58 1 14 HELIX 24 AC6 PRO B 60 GLU B 68 1 9 HELIX 25 AC7 GLU B 68 VAL B 87 1 20 HELIX 26 AC8 PRO B 95 ALA B 99 5 5 HELIX 27 AC9 VAL B 123 GLY B 136 1 14 HELIX 28 AD1 THR B 148 PHE B 163 1 16 HELIX 29 AD2 GLY B 174 SER B 183 1 10 HELIX 30 AD3 SER B 194 LYS B 207 1 14 HELIX 31 AD4 ASP B 229 ILE B 243 1 15 HELIX 32 AD5 ASN B 244 GLN B 247 5 4 HELIX 33 AD6 TYR B 259 LEU B 277 1 19 HELIX 34 AD7 THR B 288 THR B 302 1 15 HELIX 35 AD8 ASP B 331 SER B 335 5 5 HELIX 36 AD9 SER B 350 HIS B 362 1 13 HELIX 37 AE1 ASP B 374 GLN B 384 1 11 HELIX 38 AE2 MET B 396 SER B 401 5 6 HELIX 39 AE3 ILE B 409 ALA B 411 5 3 HELIX 40 AE4 GLY B 419 PHE B 426 1 8 SHEET 1 AA110 VAL A 90 VAL A 92 0 SHEET 2 AA110 GLU A 102 PRO A 109 -1 O VAL A 105 N VAL A 90 SHEET 3 AA110 THR A 427 ILE A 434 -1 O ILE A 434 N GLU A 102 SHEET 4 AA110 ASP B 389 VAL B 392 1 O ALA B 390 N SER A 431 SHEET 5 AA110 ALA B 367 PHE B 371 1 N VAL B 368 O GLN B 391 SHEET 6 AA110 CYS B 220 VAL B 224 1 N ILE B 223 O PHE B 371 SHEET 7 AA110 PRO B 252 HIS B 258 1 O TYR B 256 N LEU B 222 SHEET 8 AA110 ILE B 342 PHE B 348 1 O LEU B 346 N LEU B 255 SHEET 9 AA110 THR B 322 ASP B 325 1 N THR B 322 O LEU B 343 SHEET 10 AA110 GLN B 305 VAL B 308 -1 N GLN B 305 O ASP B 325 SHEET 1 AA2 6 VAL A 168 VAL A 170 0 SHEET 2 AA2 6 THR A 139 LYS A 143 1 N ILE A 142 O ALA A 169 SHEET 3 AA2 6 VAL A 112 ILE A 116 1 N ILE A 115 O LYS A 143 SHEET 4 AA2 6 PHE A 188 THR A 192 1 O PHE A 190 N TYR A 114 SHEET 5 AA2 6 VAL A 212 GLU A 215 1 O GLU A 215 N PHE A 191 SHEET 6 AA2 6 GLY A 413 MET A 414 -1 O MET A 414 N LEU A 214 SHEET 1 AA310 GLN A 305 VAL A 308 0 SHEET 2 AA310 THR A 322 ASP A 325 -1 O ASP A 325 N GLN A 305 SHEET 3 AA310 ILE A 342 PHE A 348 1 O LEU A 343 N THR A 322 SHEET 4 AA310 PRO A 252 HIS A 258 1 N LEU A 255 O LEU A 346 SHEET 5 AA310 CYS A 220 VAL A 224 1 N LEU A 222 O TYR A 256 SHEET 6 AA310 ALA A 367 PHE A 371 1 O PHE A 371 N ILE A 223 SHEET 7 AA310 ASP A 389 VAL A 392 1 O GLN A 391 N VAL A 368 SHEET 8 AA310 THR B 427 ILE B 434 1 O SER B 431 N ALA A 390 SHEET 9 AA310 GLU B 102 PRO B 109 -1 N VAL B 106 O LYS B 430 SHEET 10 AA310 VAL B 90 VAL B 92 -1 N VAL B 90 O VAL B 105 SHEET 1 AA4 2 ALA A 312 ASP A 313 0 SHEET 2 AA4 2 ALA A 318 LEU A 319 -1 O ALA A 318 N ASP A 313 SHEET 1 AA5 6 VAL B 168 VAL B 170 0 SHEET 2 AA5 6 THR B 139 LYS B 143 1 N ILE B 142 O ALA B 169 SHEET 3 AA5 6 VAL B 112 ILE B 116 1 N THR B 113 O ILE B 141 SHEET 4 AA5 6 PHE B 188 THR B 192 1 O PHE B 190 N TYR B 114 SHEET 5 AA5 6 VAL B 212 GLU B 215 1 O GLU B 215 N PHE B 191 SHEET 6 AA5 6 GLY B 413 MET B 414 -1 O MET B 414 N LEU B 214 SHEET 1 AA6 2 ALA B 312 ASP B 313 0 SHEET 2 AA6 2 ALA B 318 LEU B 319 -1 O ALA B 318 N ASP B 313 LINK C THR A 248 N ZBZ A 249 1555 1555 1.33 LINK C ZBZ A 249 N ILE A 250 1555 1555 1.33 LINK C THR B 248 N ZBZ B 249 1555 1555 1.32 LINK C ZBZ B 249 N ILE B 250 1555 1555 1.33 CISPEP 1 ALA A 99 PRO A 100 0 -1.44 CISPEP 2 ALA B 99 PRO B 100 0 -3.79 SITE 1 AC1 24 ILE A 116 GLY A 117 PRO A 118 PHE A 119 SITE 2 AC1 24 ASN A 120 LYS A 143 SER A 145 GLU A 146 SITE 3 AC1 24 ARG A 175 ASN A 178 THR A 192 GLY A 193 SITE 4 AC1 24 SER A 194 VAL A 197 GLU A 215 LEU A 216 SITE 5 AC1 24 GLY A 217 ZBZ A 249 GLU A 337 PHE A 339 SITE 6 AC1 24 LEU A 366 PHE A 406 HOH A 616 HOH A 631 SITE 1 AC2 25 ILE B 116 GLY B 117 PHE B 119 ASN B 120 SITE 2 AC2 25 LEU B 125 LYS B 143 SER B 145 GLU B 146 SITE 3 AC2 25 THR B 147 ARG B 175 ASN B 178 PHE B 191 SITE 4 AC2 25 THR B 192 GLY B 193 SER B 194 VAL B 197 SITE 5 AC2 25 GLU B 215 LEU B 216 GLY B 217 ZBZ B 249 SITE 6 AC2 25 GLU B 337 PHE B 339 LEU B 366 PHE B 406 SITE 7 AC2 25 HOH B 611 CRYST1 195.003 195.003 129.065 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007748 0.00000