HEADER LYASE 23-DEC-16 5UCZ TITLE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE E149A VARIANT OF TITLE 2 HELICOBACTER PYLORI WITH DHAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: FBA, HP_0176; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, METALLOENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.JACQUES,J.SYGUSCH REVDAT 4 04-OCT-23 5UCZ 1 REMARK REVDAT 3 08-JAN-20 5UCZ 1 REMARK REVDAT 2 30-MAY-18 5UCZ 1 JRNL REVDAT 1 11-APR-18 5UCZ 0 JRNL AUTH B.JACQUES,M.COINCON,J.SYGUSCH JRNL TITL ACTIVE SITE REMODELING DURING THE CATALYTIC CYCLE IN JRNL TITL 2 METAL-DEPENDENT FRUCTOSE-1,6-BISPHOSPHATE ALDOLASES. JRNL REF J. BIOL. CHEM. V. 293 7737 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29593097 JRNL DOI 10.1074/JBC.RA117.001098 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2481) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 50202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9154 - 4.4818 0.99 3477 169 0.1445 0.1686 REMARK 3 2 4.4818 - 3.5592 1.00 3443 158 0.1385 0.1605 REMARK 3 3 3.5592 - 3.1099 1.00 3431 167 0.1698 0.2325 REMARK 3 4 3.1099 - 2.8258 0.99 3405 157 0.1909 0.2327 REMARK 3 5 2.8258 - 2.6234 0.98 3352 161 0.1863 0.2212 REMARK 3 6 2.6234 - 2.4688 0.98 3350 159 0.1802 0.2361 REMARK 3 7 2.4688 - 2.3452 0.96 3298 164 0.1839 0.2338 REMARK 3 8 2.3452 - 2.2431 0.95 3246 152 0.1968 0.2684 REMARK 3 9 2.2431 - 2.1568 0.93 3147 158 0.2079 0.2950 REMARK 3 10 2.1568 - 2.0824 0.90 3079 146 0.2376 0.2694 REMARK 3 11 2.0824 - 2.0173 0.88 3031 141 0.2568 0.3284 REMARK 3 12 2.0173 - 1.9596 0.84 2847 137 0.2687 0.2995 REMARK 3 13 1.9596 - 1.9081 0.77 2621 128 0.2730 0.3225 REMARK 3 14 1.9081 - 1.8615 0.69 2345 109 0.2972 0.3092 REMARK 3 15 1.8615 - 1.8192 0.60 2044 103 0.3204 0.3984 REMARK 3 16 1.8192 - 1.7805 0.52 1785 92 0.3445 0.4099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4630 REMARK 3 ANGLE : 0.618 6228 REMARK 3 CHIRALITY : 0.041 686 REMARK 3 PLANARITY : 0.003 806 REMARK 3 DIHEDRAL : 14.520 2801 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3484 -11.7801 -40.7416 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.3527 REMARK 3 T33: 0.1750 T12: -0.0334 REMARK 3 T13: 0.0323 T23: -0.1415 REMARK 3 L TENSOR REMARK 3 L11: 0.0535 L22: 0.5236 REMARK 3 L33: 0.1729 L12: -0.1405 REMARK 3 L13: 0.0895 L23: -0.2564 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: 0.4800 S13: -0.1209 REMARK 3 S21: 0.1335 S22: 0.0464 S23: 0.0183 REMARK 3 S31: -0.0656 S32: 0.0147 S33: -0.1010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6412 -14.3435 -58.9638 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.8317 REMARK 3 T33: 0.1541 T12: -0.0341 REMARK 3 T13: 0.1533 T23: -0.3427 REMARK 3 L TENSOR REMARK 3 L11: 0.0503 L22: 0.0462 REMARK 3 L33: 0.0968 L12: -0.0575 REMARK 3 L13: -0.0804 L23: 0.0723 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: 0.1575 S13: 0.0156 REMARK 3 S21: -0.0724 S22: 0.0627 S23: -0.0888 REMARK 3 S31: -0.0130 S32: 0.0386 S33: 0.1051 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0914 -1.4909 -57.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.8175 REMARK 3 T33: 0.1203 T12: -0.0829 REMARK 3 T13: 0.0210 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 0.0132 L22: 0.0190 REMARK 3 L33: 0.1567 L12: -0.0240 REMARK 3 L13: 0.0340 L23: -0.0399 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: 0.1666 S13: -0.0485 REMARK 3 S21: -0.0766 S22: -0.0239 S23: -0.0607 REMARK 3 S31: -0.0507 S32: 0.0122 S33: -0.0738 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8610 5.0941 -37.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.2490 REMARK 3 T33: 0.1260 T12: 0.0301 REMARK 3 T13: -0.0619 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 0.5104 L22: 0.0434 REMARK 3 L33: 0.0801 L12: 0.0465 REMARK 3 L13: -0.1832 L23: -0.0315 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: 0.5251 S13: 0.0640 REMARK 3 S21: 0.1559 S22: 0.0658 S23: 0.0659 REMARK 3 S31: -0.3119 S32: -0.1628 S33: -0.0863 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4370 -18.9272 -4.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.2520 REMARK 3 T33: 0.2836 T12: 0.0237 REMARK 3 T13: -0.0115 T23: 0.1097 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.0002 REMARK 3 L33: 0.0039 L12: 0.0006 REMARK 3 L13: 0.0026 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0423 S13: -0.0509 REMARK 3 S21: 0.0455 S22: -0.0589 S23: -0.0065 REMARK 3 S31: 0.0115 S32: 0.0384 S33: -0.0155 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8302 -11.6601 -13.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.0973 REMARK 3 T33: 0.2029 T12: 0.0157 REMARK 3 T13: 0.0300 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.0754 L22: 0.1401 REMARK 3 L33: 0.1255 L12: 0.0162 REMARK 3 L13: 0.0960 L23: 0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.1061 S13: -0.1656 REMARK 3 S21: -0.0867 S22: 0.0309 S23: 0.0241 REMARK 3 S31: -0.0911 S32: -0.0005 S33: 0.0064 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5342 -19.3890 2.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.3101 REMARK 3 T33: 0.3006 T12: 0.0325 REMARK 3 T13: 0.0934 T23: 0.1650 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0030 REMARK 3 L33: 0.0125 L12: 0.0034 REMARK 3 L13: 0.0012 L23: 0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.1082 S13: -0.0593 REMARK 3 S21: 0.0563 S22: 0.0390 S23: 0.0223 REMARK 3 S31: -0.0257 S32: -0.0500 S33: 0.0412 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6860 -13.0605 8.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.2989 REMARK 3 T33: 0.1934 T12: 0.0597 REMARK 3 T13: 0.0914 T23: 0.1952 REMARK 3 L TENSOR REMARK 3 L11: 0.0469 L22: 0.0509 REMARK 3 L33: 0.0523 L12: 0.0320 REMARK 3 L13: -0.0358 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.1295 S13: -0.0712 REMARK 3 S21: 0.0833 S22: 0.0204 S23: 0.0309 REMARK 3 S31: -0.0383 S32: -0.0362 S33: 0.0624 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2718 -3.0626 4.9802 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2730 REMARK 3 T33: 0.1950 T12: 0.0196 REMARK 3 T13: -0.0125 T23: 0.0963 REMARK 3 L TENSOR REMARK 3 L11: 0.0228 L22: 0.0128 REMARK 3 L33: 0.0162 L12: 0.0175 REMARK 3 L13: -0.0096 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.1985 S13: 0.0364 REMARK 3 S21: 0.0090 S22: 0.0283 S23: 0.1031 REMARK 3 S31: -0.1783 S32: 0.0022 S33: -0.0134 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8737 5.7747 -5.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.2521 T22: 0.0987 REMARK 3 T33: 0.1441 T12: -0.0352 REMARK 3 T13: -0.0529 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.2879 L22: 0.0081 REMARK 3 L33: 0.0942 L12: 0.0467 REMARK 3 L13: -0.1627 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: -0.2422 S13: 0.0333 REMARK 3 S21: -0.0380 S22: -0.0489 S23: -0.0146 REMARK 3 S31: -0.1749 S32: 0.0892 S33: -0.0327 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2900 3.3835 -20.4264 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: -0.0004 REMARK 3 T33: 0.1421 T12: -0.0705 REMARK 3 T13: -0.0202 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 0.0571 L22: 0.0472 REMARK 3 L33: 0.0620 L12: 0.0416 REMARK 3 L13: -0.0171 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.0068 S13: 0.0004 REMARK 3 S21: -0.1897 S22: 0.0537 S23: -0.0635 REMARK 3 S31: -0.0853 S32: 0.1517 S33: -0.0052 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 29.911 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08477 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C4U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PEG 1000, CALCIUM ACETATE, REMARK 280 TRIS-ACETIC ACID BUFFER, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.06650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 137 REMARK 465 LEU A 138 REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 ALA A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 ALA A 152 REMARK 465 VAL A 153 REMARK 465 ARG B 137 REMARK 465 LEU B 138 REMARK 465 MET B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 ALA B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 465 ALA B 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 50 HG SER A 89 1.55 REMARK 500 H GLY A 235 O HOH A 507 1.57 REMARK 500 O HOH A 524 O HOH A 600 2.05 REMARK 500 O HOH A 524 O HOH A 584 2.07 REMARK 500 O HOH B 594 O HOH B 634 2.14 REMARK 500 O HOH A 610 O HOH A 620 2.14 REMARK 500 O HOH B 623 O HOH B 655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 215 71.60 50.39 REMARK 500 LYS A 231 -141.45 56.46 REMARK 500 ASP A 255 -60.86 -148.20 REMARK 500 ILE B 215 73.74 49.49 REMARK 500 ASP B 255 -56.61 -140.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 GLU A 132 OE2 149.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 GLU A 134 OE1 83.3 REMARK 620 3 GLU A 134 OE2 132.2 49.6 REMARK 620 4 HIS A 210 ND1 88.4 86.1 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 180 NE2 104.2 REMARK 620 3 HIS A 210 ND1 82.6 112.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 47 OE1 REMARK 620 2 ASP B 82 OD1 89.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 HIS B 180 NE2 109.6 REMARK 620 3 HIS B 210 ND1 97.6 111.0 REMARK 620 4 HOH B 503 O 110.1 125.9 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 HIS B 180 NE2 110.8 REMARK 620 3 HIS B 210 ND1 106.0 134.3 REMARK 620 4 13P B 404 O3 110.4 100.0 91.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UCK RELATED DB: PDB REMARK 900 RELATED ID: 5UCN RELATED DB: PDB REMARK 900 RELATED ID: 5UCP RELATED DB: PDB REMARK 900 RELATED ID: 5UCS RELATED DB: PDB REMARK 900 RELATED ID: 5UD0 RELATED DB: PDB REMARK 900 RELATED ID: 5UD1 RELATED DB: PDB REMARK 900 RELATED ID: 5UD2 RELATED DB: PDB REMARK 900 RELATED ID: 5UD3 RELATED DB: PDB REMARK 900 RELATED ID: 5UD4 RELATED DB: PDB DBREF 5UCZ A 1 307 UNP P56109 ALF_HELPY 1 307 DBREF 5UCZ B 1 307 UNP P56109 ALF_HELPY 1 307 SEQADV 5UCZ ALA A 48 UNP P56109 THR 48 CONFLICT SEQADV 5UCZ ILE A 67 UNP P56109 THR 67 CONFLICT SEQADV 5UCZ ALA A 149 UNP P56109 GLU 149 ENGINEERED MUTATION SEQADV 5UCZ ALA B 48 UNP P56109 THR 48 CONFLICT SEQADV 5UCZ ILE B 67 UNP P56109 THR 67 CONFLICT SEQADV 5UCZ ALA B 149 UNP P56109 GLU 149 ENGINEERED MUTATION SEQRES 1 A 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 A 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 A 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 A 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 A 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 A 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 A 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 A 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 A 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 A 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 A 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 A 307 ASN ILE SER VAL ASP ALA LYS ASP ALA VAL LEU VAL ASN SEQRES 13 A 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 A 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 A 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 A 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 A 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 A 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 A 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 A 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 A 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 A 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 A 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 A 307 LEU LEU GLY SER ALA ASN LYS ILE SEQRES 1 B 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 B 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 B 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 B 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 B 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 B 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 B 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 B 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 B 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 B 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 B 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 B 307 ASN ILE SER VAL ASP ALA LYS ASP ALA VAL LEU VAL ASN SEQRES 13 B 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 B 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 B 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 B 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 B 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 B 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 B 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 B 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 B 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 B 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 B 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 B 307 LEU LEU GLY SER ALA ASN LYS ILE HET NA A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET 13P A 404 30 HET NA B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET 13P B 404 30 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE FORMUL 3 NA 2(NA 1+) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 13P 2(C3 H7 O6 P) FORMUL 11 HOH *320(H2 O) HELIX 1 AA1 LYS A 4 GLY A 16 1 13 HELIX 2 AA2 ASN A 26 ASN A 41 1 16 HELIX 3 AA3 GLU A 50 GLY A 57 1 8 HELIX 4 AA4 GLY A 57 TYR A 72 1 16 HELIX 5 AA5 THR A 86 GLY A 97 1 12 HELIX 6 AA6 ALA A 109 ALA A 127 1 19 HELIX 7 AA7 ASN A 156 GLN A 168 1 13 HELIX 8 AA8 ASP A 192 ASN A 204 1 13 HELIX 9 AA9 PRO A 216 ALA A 226 1 11 HELIX 10 AB1 PRO A 237 GLY A 248 1 12 HELIX 11 AB2 ASP A 255 ASP A 273 1 19 HELIX 12 AB3 ASP A 278 LEU A 301 1 24 HELIX 13 AB4 LYS B 4 GLY B 16 1 13 HELIX 14 AB5 ASN B 26 ASN B 41 1 16 HELIX 15 AB6 GLU B 50 GLY B 57 1 8 HELIX 16 AB7 GLY B 57 TYR B 72 1 16 HELIX 17 AB8 THR B 86 GLY B 97 1 12 HELIX 18 AB9 ALA B 109 ALA B 127 1 19 HELIX 19 AC1 ASN B 156 GLN B 168 1 13 HELIX 20 AC2 ASP B 192 ASN B 204 1 13 HELIX 21 AC3 PRO B 216 ALA B 226 1 11 HELIX 22 AC4 PRO B 237 GLY B 247 1 11 HELIX 23 AC5 ASP B 255 ASP B 273 1 19 HELIX 24 AC6 ASP B 278 LEU B 301 1 24 SHEET 1 AA1 9 VAL A 19 ASN A 23 0 SHEET 2 AA1 9 LEU A 44 SER A 49 1 O GLN A 47 N PHE A 22 SHEET 3 AA1 9 VAL A 77 GLY A 84 1 O ALA A 78 N ILE A 46 SHEET 4 AA1 9 SER A 100 ILE A 103 1 O SER A 100 N LEU A 81 SHEET 5 AA1 9 SER A 130 LEU A 135 1 O SER A 130 N VAL A 101 SHEET 6 AA1 9 TYR A 171 PRO A 174 1 O ALA A 173 N ALA A 133 SHEET 7 AA1 9 LEU A 207 LEU A 209 1 O VAL A 208 N LEU A 172 SHEET 8 AA1 9 ILE A 249 THR A 254 1 O ASN A 250 N LEU A 207 SHEET 9 AA1 9 VAL A 19 ASN A 23 1 N VAL A 19 O ASN A 250 SHEET 1 AA2 9 VAL B 19 ASN B 23 0 SHEET 2 AA2 9 LEU B 44 SER B 49 1 O GLN B 47 N PHE B 22 SHEET 3 AA2 9 VAL B 77 GLY B 84 1 O ALA B 78 N ILE B 46 SHEET 4 AA2 9 SER B 100 ILE B 103 1 O SER B 100 N LEU B 81 SHEET 5 AA2 9 SER B 130 LEU B 135 1 O GLU B 132 N VAL B 101 SHEET 6 AA2 9 TYR B 171 PRO B 174 1 O ALA B 173 N ALA B 133 SHEET 7 AA2 9 LEU B 207 LEU B 209 1 O VAL B 208 N LEU B 172 SHEET 8 AA2 9 ILE B 249 THR B 254 1 O LYS B 251 N LEU B 209 SHEET 9 AA2 9 VAL B 19 ASN B 23 1 N ALA B 21 O THR B 254 LINK OD1 ASP A 82 NA NA A 401 1555 1555 2.66 LINK NE2AHIS A 83 ZN A ZN A 402 1555 1555 2.56 LINK NE2BHIS A 83 ZN B ZN A 403 1555 1555 1.88 LINK OE2 GLU A 132 NA NA A 401 1555 1555 3.19 LINK OE1 GLU A 134 ZN A ZN A 402 1555 1555 2.70 LINK OE2 GLU A 134 ZN A ZN A 402 1555 1555 2.51 LINK NE2 HIS A 180 ZN B ZN A 403 1555 1555 1.92 LINK ND1AHIS A 210 ZN A ZN A 402 1555 1555 2.51 LINK ND1BHIS A 210 ZN B ZN A 403 1555 1555 2.39 LINK OE1 GLN B 47 NA NA B 401 1555 1555 3.16 LINK OD1 ASP B 82 NA NA B 401 1555 1555 2.70 LINK NE2 HIS B 83 ZN A ZN B 402 1555 1555 1.97 LINK NE2 HIS B 83 ZN B ZN B 403 1555 1555 2.07 LINK NE2 HIS B 180 ZN A ZN B 402 1555 1555 2.07 LINK NE2 HIS B 180 ZN B ZN B 403 1555 1555 1.94 LINK ND1 HIS B 210 ZN A ZN B 402 1555 1555 2.44 LINK ND1 HIS B 210 ZN B ZN B 403 1555 1555 2.10 LINK ZN A ZN B 402 O HOH B 503 1555 1555 1.93 LINK ZN B ZN B 403 O3 B13P B 404 1555 1555 2.46 SITE 1 AC1 7 GLN A 47 HIS A 80 ASP A 82 GLU A 132 SITE 2 AC1 7 HIS A 210 LYS A 251 ASN A 253 SITE 1 AC2 4 HIS A 83 GLU A 134 HIS A 210 ZN A 403 SITE 1 AC3 5 HIS A 83 HIS A 180 HIS A 210 ZN A 402 SITE 2 AC3 5 13P A 404 SITE 1 AC4 14 ASP A 82 HIS A 83 HIS A 180 GLY A 181 SITE 2 AC4 14 LYS A 184 HIS A 210 GLY A 211 ALA A 212 SITE 3 AC4 14 SER A 213 ASN A 253 THR A 254 ASP A 255 SITE 4 AC4 14 THR A 256 ZN A 403 SITE 1 AC5 7 GLN B 47 HIS B 80 ASP B 82 GLU B 132 SITE 2 AC5 7 HIS B 210 LYS B 251 ASN B 253 SITE 1 AC6 6 HIS B 83 HIS B 180 HIS B 210 ZN B 403 SITE 2 AC6 6 13P B 404 HOH B 503 SITE 1 AC7 6 HIS B 83 HIS B 180 HIS B 210 ZN B 402 SITE 2 AC7 6 13P B 404 HOH B 503 SITE 1 AC8 16 ASP B 82 HIS B 83 HIS B 180 GLY B 181 SITE 2 AC8 16 LYS B 184 HIS B 210 GLY B 211 ALA B 212 SITE 3 AC8 16 SER B 213 ASN B 253 THR B 254 ASP B 255 SITE 4 AC8 16 THR B 256 ZN B 402 ZN B 403 HOH B 514 CRYST1 39.474 86.133 91.196 90.00 100.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025333 0.000000 0.004592 0.00000 SCALE2 0.000000 0.011610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011144 0.00000