HEADER LYASE 23-DEC-16 5UD1 TITLE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE H180Q VARIANT OF TITLE 2 HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: FBA, HP_0176; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, METALLOENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.JACQUES,J.SYGUSCH REVDAT 4 04-OCT-23 5UD1 1 LINK REVDAT 3 08-JAN-20 5UD1 1 REMARK REVDAT 2 30-MAY-18 5UD1 1 JRNL REVDAT 1 11-APR-18 5UD1 0 JRNL AUTH B.JACQUES,M.COINCON,J.SYGUSCH JRNL TITL ACTIVE SITE REMODELING DURING THE CATALYTIC CYCLE IN JRNL TITL 2 METAL-DEPENDENT FRUCTOSE-1,6-BISPHOSPHATE ALDOLASES. JRNL REF J. BIOL. CHEM. V. 293 7737 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29593097 JRNL DOI 10.1074/JBC.RA117.001098 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 3 NUMBER OF REFLECTIONS : 44717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6112 - 4.5183 0.97 3059 163 0.1736 0.1993 REMARK 3 2 4.5183 - 3.5885 0.95 2979 156 0.1620 0.2171 REMARK 3 3 3.5885 - 3.1356 0.95 3009 158 0.1928 0.2379 REMARK 3 4 3.1356 - 2.8492 0.93 2929 154 0.2185 0.2725 REMARK 3 5 2.8492 - 2.6451 0.92 2893 152 0.2159 0.2242 REMARK 3 6 2.6451 - 2.4892 0.91 2871 153 0.2295 0.3007 REMARK 3 7 2.4892 - 2.3646 0.90 2823 157 0.2316 0.2825 REMARK 3 8 2.3646 - 2.2618 0.87 2759 131 0.2336 0.3358 REMARK 3 9 2.2618 - 2.1747 0.86 2692 151 0.2348 0.2959 REMARK 3 10 2.1747 - 2.0997 0.84 2673 135 0.2426 0.2549 REMARK 3 11 2.0997 - 2.0341 0.84 2654 148 0.2524 0.3081 REMARK 3 12 2.0341 - 1.9759 0.80 2490 140 0.2660 0.3323 REMARK 3 13 1.9759 - 1.9239 0.77 2401 130 0.2791 0.3090 REMARK 3 14 1.9239 - 1.8770 0.74 2319 126 0.3038 0.3891 REMARK 3 15 1.8770 - 1.8343 0.70 2214 113 0.3347 0.4111 REMARK 3 16 1.8343 - 1.7953 0.54 1699 86 0.3543 0.3708 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4380 REMARK 3 ANGLE : 0.715 5888 REMARK 3 CHIRALITY : 0.046 661 REMARK 3 PLANARITY : 0.004 765 REMARK 3 DIHEDRAL : 2.459 3189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0966 20.6661 -14.8158 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1647 REMARK 3 T33: 0.2029 T12: -0.0163 REMARK 3 T13: 0.0079 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 0.0033 REMARK 3 L33: 0.0060 L12: -0.0015 REMARK 3 L13: 0.0031 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: -0.0429 S13: 0.0270 REMARK 3 S21: -0.0006 S22: 0.0444 S23: -0.0291 REMARK 3 S31: 0.0447 S32: 0.0127 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1271 18.3463 -26.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1324 REMARK 3 T33: 0.1122 T12: 0.0081 REMARK 3 T13: 0.0081 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.0213 L22: 0.0742 REMARK 3 L33: 0.1038 L12: 0.0233 REMARK 3 L13: 0.0526 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.0300 S13: 0.0868 REMARK 3 S21: -0.0652 S22: 0.0265 S23: -0.0250 REMARK 3 S31: 0.0297 S32: 0.0248 S33: 0.0023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8892 31.3076 -11.7067 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.2018 REMARK 3 T33: 0.1970 T12: 0.0182 REMARK 3 T13: 0.0031 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.0331 L22: 0.0284 REMARK 3 L33: 0.0335 L12: 0.0262 REMARK 3 L13: 0.0237 L23: 0.0103 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.1915 S13: 0.1655 REMARK 3 S21: 0.0443 S22: -0.0457 S23: 0.0355 REMARK 3 S31: -0.0518 S32: -0.1057 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4475 37.1638 -17.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.2496 REMARK 3 T33: 0.2333 T12: 0.0079 REMARK 3 T13: 0.0148 T23: -0.0906 REMARK 3 L TENSOR REMARK 3 L11: 0.0230 L22: 0.0155 REMARK 3 L33: 0.0078 L12: 0.0122 REMARK 3 L13: -0.0004 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.0702 S13: 0.1200 REMARK 3 S21: 0.0209 S22: 0.0810 S23: 0.0042 REMARK 3 S31: -0.0052 S32: 0.0189 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6319 27.8616 -38.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.0861 REMARK 3 T33: 0.1116 T12: -0.0616 REMARK 3 T13: 0.0071 T23: 0.0729 REMARK 3 L TENSOR REMARK 3 L11: 0.5773 L22: 0.1535 REMARK 3 L33: 0.2070 L12: -0.2202 REMARK 3 L13: -0.1935 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.0292 S13: 0.2042 REMARK 3 S21: -0.2323 S22: 0.0854 S23: -0.0959 REMARK 3 S31: -0.0300 S32: 0.0661 S33: 0.1679 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5708 -12.5756 -44.3301 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.2240 REMARK 3 T33: 0.2296 T12: 0.0160 REMARK 3 T13: -0.0092 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.0057 REMARK 3 L33: 0.0032 L12: -0.0006 REMARK 3 L13: 0.0024 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.0036 S13: -0.0420 REMARK 3 S21: 0.0857 S22: -0.0632 S23: 0.0044 REMARK 3 S31: 0.0055 S32: -0.0034 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4079 -1.1374 -43.3204 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1547 REMARK 3 T33: 0.1592 T12: 0.0047 REMARK 3 T13: 0.0055 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0206 L22: 0.1025 REMARK 3 L33: 0.0381 L12: 0.0570 REMARK 3 L13: 0.0173 L23: 0.0544 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: 0.0263 S13: -0.0664 REMARK 3 S21: 0.0353 S22: -0.0189 S23: 0.0056 REMARK 3 S31: -0.0172 S32: -0.0011 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4490 -17.0085 -54.5031 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.1853 REMARK 3 T33: 0.2401 T12: 0.0067 REMARK 3 T13: 0.0102 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: 0.0136 REMARK 3 L33: 0.0284 L12: 0.0024 REMARK 3 L13: 0.0020 L23: 0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0893 S13: -0.1672 REMARK 3 S21: -0.0017 S22: 0.0837 S23: -0.1270 REMARK 3 S31: 0.0002 S32: 0.0280 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0807 -1.8182 -61.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.1647 REMARK 3 T33: 0.1190 T12: -0.0073 REMARK 3 T13: -0.0542 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.5747 L22: 0.2501 REMARK 3 L33: 0.0785 L12: 0.0391 REMARK 3 L13: -0.1570 L23: -0.0696 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.2378 S13: -0.1446 REMARK 3 S21: -0.1560 S22: -0.1288 S23: 0.0022 REMARK 3 S31: -0.1846 S32: 0.0500 S33: -0.1411 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3887 14.2340 -49.5355 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.1365 REMARK 3 T33: 0.1186 T12: 0.0137 REMARK 3 T13: -0.0677 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 0.1080 L22: 0.0790 REMARK 3 L33: 0.0367 L12: -0.0961 REMARK 3 L13: -0.0468 L23: 0.0501 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: 0.0735 S13: 0.0375 REMARK 3 S21: -0.0382 S22: -0.0542 S23: 0.1112 REMARK 3 S31: -0.2627 S32: -0.1271 S33: -0.2325 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.795 REMARK 200 RESOLUTION RANGE LOW (A) : 28.608 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.06870 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C4U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PEG 1000, CALCIUM ACETATE, REMARK 280 TRIS-ACETIC ACID BUFFER, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -198.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 137 REMARK 465 LEU A 138 REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 ALA A 152 REMARK 465 VAL A 153 REMARK 465 THR A 178 REMARK 465 SER A 179 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 ALA A 182 REMARK 465 PHE A 183 REMARK 465 LYS A 184 REMARK 465 PHE A 185 REMARK 465 LYS A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 188 REMARK 465 PRO A 189 REMARK 465 ARG B 137 REMARK 465 LEU B 138 REMARK 465 MET B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 465 ALA B 152 REMARK 465 VAL B 153 REMARK 465 THR B 178 REMARK 465 SER B 179 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 ALA B 182 REMARK 465 PHE B 183 REMARK 465 LYS B 184 REMARK 465 PHE B 185 REMARK 465 LYS B 186 REMARK 465 GLY B 187 REMARK 465 GLU B 188 REMARK 465 PRO B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 261 O HOH B 501 1.93 REMARK 500 OG SER A 100 OH TYR A 171 2.00 REMARK 500 O HOH B 501 O HOH B 521 2.04 REMARK 500 O HOH A 559 O HOH A 602 2.10 REMARK 500 O HOH A 504 O HOH A 531 2.11 REMARK 500 OE1 GLU B 272 O HOH B 502 2.16 REMARK 500 O HOH B 567 O HOH B 592 2.16 REMARK 500 OE1 GLU B 115 O HOH B 503 2.16 REMARK 500 O HOH B 587 O HOH B 618 2.17 REMARK 500 OE1 GLN B 242 O HOH B 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 572 O HOH A 612 1655 2.13 REMARK 500 O HOH B 554 O HOH B 641 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 214 61.70 -119.42 REMARK 500 ILE A 215 90.73 -31.01 REMARK 500 ASP A 255 -67.53 -143.49 REMARK 500 ILE B 215 71.96 48.21 REMARK 500 ASP B 255 -59.02 -138.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 624 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 GLU A 132 OE1 166.2 REMARK 620 3 GLU A 132 OE2 140.8 42.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 GLU A 134 OE2 129.2 REMARK 620 3 HOH A 531 O 65.7 88.4 REMARK 620 4 HOH A 566 O 74.0 156.4 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HOH A 523 O 78.3 REMARK 620 3 HOH A 566 O 75.8 154.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 82 OD1 REMARK 620 2 GLU B 132 OE1 145.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 104 OD2 REMARK 620 2 GLU B 134 OE1 82.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 134 OE1 REMARK 620 2 GLU B 134 OE2 50.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UCK RELATED DB: PDB REMARK 900 RELATED ID: 5UCN RELATED DB: PDB REMARK 900 RELATED ID: 5UCP RELATED DB: PDB REMARK 900 RELATED ID: 5UCS RELATED DB: PDB REMARK 900 RELATED ID: 5UCZ RELATED DB: PDB REMARK 900 RELATED ID: 5UD0 RELATED DB: PDB REMARK 900 RELATED ID: 5UD2 RELATED DB: PDB REMARK 900 RELATED ID: 5UD3 RELATED DB: PDB REMARK 900 RELATED ID: 5UD4 RELATED DB: PDB DBREF 5UD1 A 1 307 UNP P56109 ALF_HELPY 1 307 DBREF 5UD1 B 1 307 UNP P56109 ALF_HELPY 1 307 SEQADV 5UD1 ALA A 48 UNP P56109 THR 48 CONFLICT SEQADV 5UD1 ILE A 67 UNP P56109 THR 67 CONFLICT SEQADV 5UD1 GLN A 180 UNP P56109 HIS 180 ENGINEERED MUTATION SEQADV 5UD1 ALA B 48 UNP P56109 THR 48 CONFLICT SEQADV 5UD1 ILE B 67 UNP P56109 THR 67 CONFLICT SEQADV 5UD1 GLN B 180 UNP P56109 HIS 180 ENGINEERED MUTATION SEQRES 1 A 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 A 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 A 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 A 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 A 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 A 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 A 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 A 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 A 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 A 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 A 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 A 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 A 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 A 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER GLN GLY ALA SEQRES 15 A 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 A 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 A 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 A 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 A 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 A 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 A 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 A 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 A 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 A 307 LEU LEU GLY SER ALA ASN LYS ILE SEQRES 1 B 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 B 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 B 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 B 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 B 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 B 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 B 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 B 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 B 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 B 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 B 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 B 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 B 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 B 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER GLN GLY ALA SEQRES 15 B 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 B 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 B 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 B 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 B 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 B 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 B 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 B 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 B 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 B 307 LEU LEU GLY SER ALA ASN LYS ILE HET NA A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET NA B 401 1 HET ZN B 402 1 HET ZN B 403 1 HETNAM NA SODIUM ION HETNAM ZN ZINC ION FORMUL 3 NA 2(NA 1+) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *271(H2 O) HELIX 1 AA1 LYS A 4 GLY A 16 1 13 HELIX 2 AA2 ASN A 26 ASN A 41 1 16 HELIX 3 AA3 GLU A 50 GLY A 57 1 8 HELIX 4 AA4 GLY A 57 TYR A 72 1 16 HELIX 5 AA5 THR A 86 GLY A 97 1 12 HELIX 6 AA6 ALA A 109 ALA A 127 1 19 HELIX 7 AA7 ASN A 156 GLN A 168 1 13 HELIX 8 AA8 ASP A 192 ASN A 204 1 13 HELIX 9 AA9 PRO A 216 ALA A 226 1 11 HELIX 10 AB1 PRO A 237 GLY A 248 1 12 HELIX 11 AB2 ASP A 255 ASP A 273 1 19 HELIX 12 AB3 ASP A 278 LEU A 301 1 24 HELIX 13 AB4 LYS B 4 GLY B 16 1 13 HELIX 14 AB5 ASN B 26 ASN B 41 1 16 HELIX 15 AB6 GLU B 50 GLY B 57 1 8 HELIX 16 AB7 GLY B 57 TYR B 72 1 16 HELIX 17 AB8 THR B 86 GLY B 97 1 12 HELIX 18 AB9 ALA B 109 ALA B 127 1 19 HELIX 19 AC1 ASN B 156 GLN B 168 1 13 HELIX 20 AC2 ASP B 192 ASN B 204 1 13 HELIX 21 AC3 PRO B 216 ALA B 226 1 11 HELIX 22 AC4 PRO B 237 GLY B 248 1 12 HELIX 23 AC5 ASP B 255 ASP B 273 1 19 HELIX 24 AC6 ASP B 278 GLY B 302 1 25 SHEET 1 AA1 9 VAL A 19 ASN A 23 0 SHEET 2 AA1 9 LEU A 44 SER A 49 1 O GLN A 47 N PHE A 22 SHEET 3 AA1 9 VAL A 77 GLY A 84 1 O HIS A 80 N ILE A 46 SHEET 4 AA1 9 SER A 100 ILE A 103 1 O SER A 100 N LEU A 81 SHEET 5 AA1 9 SER A 130 LEU A 135 1 O GLU A 132 N VAL A 101 SHEET 6 AA1 9 TYR A 171 PRO A 174 1 O ALA A 173 N ALA A 133 SHEET 7 AA1 9 LEU A 207 LEU A 209 1 O VAL A 208 N LEU A 172 SHEET 8 AA1 9 ILE A 249 THR A 254 1 O ASN A 250 N LEU A 207 SHEET 9 AA1 9 VAL A 19 ASN A 23 1 N ALA A 21 O VAL A 252 SHEET 1 AA2 9 VAL B 19 ASN B 23 0 SHEET 2 AA2 9 LEU B 44 SER B 49 1 O GLN B 47 N PHE B 22 SHEET 3 AA2 9 VAL B 77 GLY B 84 1 O HIS B 80 N ILE B 46 SHEET 4 AA2 9 SER B 100 ILE B 103 1 O SER B 100 N LEU B 81 SHEET 5 AA2 9 SER B 130 LEU B 135 1 O GLU B 132 N VAL B 101 SHEET 6 AA2 9 TYR B 171 PRO B 174 1 O ALA B 173 N ALA B 133 SHEET 7 AA2 9 LEU B 207 LEU B 209 1 O VAL B 208 N LEU B 172 SHEET 8 AA2 9 ILE B 249 THR B 254 1 O ASN B 250 N LEU B 207 SHEET 9 AA2 9 VAL B 19 ASN B 23 1 N VAL B 19 O ASN B 250 LINK OD1 ASP A 82 NA NA A 401 1555 1555 3.05 LINK NE2AHIS A 83 ZN A ZN A 402 1555 1555 2.64 LINK NE2BHIS A 83 ZN B ZN A 403 1555 1555 2.34 LINK OE1 GLU A 132 NA NA A 401 1555 1555 3.16 LINK OE2 GLU A 132 NA NA A 401 1555 1555 2.89 LINK OE2 GLU A 134 ZN A ZN A 402 1555 1555 2.63 LINK ZN A ZN A 402 O HOH A 531 1555 1555 2.16 LINK ZN A ZN A 402 O HOH A 566 1555 1555 2.20 LINK ZN B ZN A 403 O HOH A 523 1555 1555 2.49 LINK ZN B ZN A 403 O HOH A 566 1555 1555 2.32 LINK OD1 ASP B 82 NA NA B 401 1555 1555 2.94 LINK OD2 ASP B 104 ZN C ZN B 403 1555 1555 2.47 LINK OE1 GLU B 132 NA NA B 401 1555 1555 3.09 LINK OE1 GLU B 134 ZN A ZN B 402 1555 1555 2.64 LINK OE2 GLU B 134 ZN A ZN B 402 1555 1555 2.54 LINK OE1 GLU B 134 ZN C ZN B 403 1555 1555 2.67 SITE 1 AC1 8 GLN A 47 HIS A 80 ASP A 82 MET A 102 SITE 2 AC1 8 GLU A 132 HIS A 210 LYS A 251 ASN A 253 SITE 1 AC2 5 HIS A 83 GLU A 134 HIS A 210 HOH A 531 SITE 2 AC2 5 HOH A 566 SITE 1 AC3 4 HIS A 83 HIS A 210 HOH A 523 HOH A 566 SITE 1 AC4 8 GLN B 47 HIS B 80 ASP B 82 MET B 102 SITE 2 AC4 8 GLU B 132 HIS B 210 LYS B 251 ASN B 253 SITE 1 AC5 5 HIS B 83 GLU B 134 HIS B 210 ZN B 403 SITE 2 AC5 5 HOH B 617 SITE 1 AC6 4 HIS B 83 ASP B 104 GLU B 134 ZN B 402 CRYST1 39.301 64.207 62.520 81.37 74.10 75.94 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025445 -0.006370 -0.006704 0.00000 SCALE2 0.000000 0.016055 -0.001442 0.00000 SCALE3 0.000000 0.000000 0.016698 0.00000