HEADER IMMUNE SYSTEM 23-DEC-16 5UD9 TITLE CRYSTAL STRUCTURE OF 354BG18 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E KEYWDS HIV, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.SCHARF,P.J.BJORKMAN REVDAT 5 23-OCT-24 5UD9 1 REMARK REVDAT 4 04-OCT-23 5UD9 1 REMARK REVDAT 3 11-DEC-19 5UD9 1 REMARK REVDAT 2 13-SEP-17 5UD9 1 REMARK REVDAT 1 01-FEB-17 5UD9 0 JRNL AUTH N.T.FREUND,H.WANG,L.SCHARF,L.NOGUEIRA,J.A.HORWITZ,Y.BAR-ON, JRNL AUTH 2 J.GOLIJANIN,S.A.SIEVERS,D.SOK,H.CAI,J.C.CESAR LORENZI, JRNL AUTH 3 A.HALPER-STROMBERG,I.TOTH,A.PIECHOCKA-TROCHA,H.B.GRISTICK, JRNL AUTH 4 M.J.VAN GILS,R.W.SANDERS,L.X.WANG,M.S.SEAMAN,D.R.BURTON, JRNL AUTH 5 A.GAZUMYAN,B.D.WALKER,A.P.WEST,P.J.BJORKMAN,M.C.NUSSENZWEIG JRNL TITL COEXISTENCE OF POTENT HIV-1 BROADLY NEUTRALIZING ANTIBODIES JRNL TITL 2 AND ANTIBODY-SENSITIVE VIRUSES IN A VIREMIC CONTROLLER. JRNL REF SCI TRANSL MED V. 9 2017 JRNL REFN ESSN 1946-6242 JRNL PMID 28100831 JRNL DOI 10.1126/SCITRANSLMED.AAL2144 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 106582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6847 - 2.8907 0.99 9788 148 0.1681 0.1548 REMARK 3 2 2.8907 - 2.2946 0.97 9534 142 0.1674 0.1718 REMARK 3 3 2.2946 - 2.0045 0.99 9654 146 0.1514 0.1715 REMARK 3 4 2.0045 - 1.8213 0.98 9568 143 0.1571 0.1678 REMARK 3 5 1.8213 - 1.6907 0.98 9513 144 0.1777 0.2158 REMARK 3 6 1.6907 - 1.5911 0.98 9577 144 0.1911 0.2468 REMARK 3 7 1.5911 - 1.5114 0.99 9595 144 0.2084 0.2261 REMARK 3 8 1.5114 - 1.4456 0.97 9422 142 0.2393 0.2426 REMARK 3 9 1.4456 - 1.3899 0.98 9486 143 0.2626 0.2908 REMARK 3 10 1.3899 - 1.3420 0.98 9491 142 0.2893 0.3038 REMARK 3 11 1.3420 - 1.3000 0.96 9374 142 0.3146 0.3464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3252 REMARK 3 ANGLE : 0.999 4459 REMARK 3 CHIRALITY : 0.083 517 REMARK 3 PLANARITY : 0.007 567 REMARK 3 DIHEDRAL : 15.931 1125 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8768 20.6815 92.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1190 REMARK 3 T33: 0.1206 T12: 0.0120 REMARK 3 T13: -0.0120 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.3583 L22: 0.4806 REMARK 3 L33: 0.5195 L12: 0.3641 REMARK 3 L13: -0.1849 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: -0.0004 S13: 0.0368 REMARK 3 S21: -0.0138 S22: -0.0180 S23: 0.0131 REMARK 3 S31: -0.0434 S32: -0.0430 S33: 0.0314 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 92 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8889 10.1131 75.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.1478 REMARK 3 T33: 0.1276 T12: -0.0322 REMARK 3 T13: -0.0101 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.7383 L22: 0.1564 REMARK 3 L33: 0.2459 L12: -0.2593 REMARK 3 L13: -0.2846 L23: 0.0788 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: 0.1216 S13: -0.0656 REMARK 3 S21: -0.0807 S22: 0.0086 S23: 0.0388 REMARK 3 S31: -0.0126 S32: -0.0631 S33: 0.0184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 5 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2166 -5.8195 101.7134 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.1439 REMARK 3 T33: 0.2127 T12: 0.0005 REMARK 3 T13: 0.0115 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.7397 L22: 1.2820 REMARK 3 L33: 0.8369 L12: 0.0619 REMARK 3 L13: -0.2813 L23: -0.2850 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: -0.0541 S13: -0.0539 REMARK 3 S21: 0.0662 S22: -0.0403 S23: -0.2409 REMARK 3 S31: 0.2377 S32: 0.1323 S33: 0.1079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 31 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1145 2.9034 93.8622 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1055 REMARK 3 T33: 0.1597 T12: 0.0014 REMARK 3 T13: 0.0119 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.0684 L22: 1.3997 REMARK 3 L33: 1.6522 L12: 0.4445 REMARK 3 L13: -0.6275 L23: -0.3593 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: 0.1884 S13: -0.0573 REMARK 3 S21: -0.1629 S22: 0.0144 S23: -0.1104 REMARK 3 S31: 0.0323 S32: -0.0462 S33: 0.0362 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 50 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6861 0.3154 98.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1204 REMARK 3 T33: 0.1497 T12: 0.0025 REMARK 3 T13: 0.0133 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.4971 L22: 1.1343 REMARK 3 L33: 0.5979 L12: 0.3705 REMARK 3 L13: -0.0532 L23: -0.7585 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: 0.0263 S13: 0.0164 REMARK 3 S21: -0.0309 S22: -0.0531 S23: -0.0634 REMARK 3 S31: 0.0855 S32: -0.0262 S33: 0.0498 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 106 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5044 -13.9663 85.7873 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.1503 REMARK 3 T33: 0.2574 T12: 0.0110 REMARK 3 T13: 0.1249 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.0552 L22: 0.4941 REMARK 3 L33: 3.4366 L12: -0.7179 REMARK 3 L13: -1.9027 L23: 1.3145 REMARK 3 S TENSOR REMARK 3 S11: -0.3768 S12: 0.0771 S13: -0.1099 REMARK 3 S21: -0.0097 S22: 0.1886 S23: 0.2261 REMARK 3 S31: 0.4501 S32: -0.0177 S33: 0.0857 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.4020 4.5847 65.5845 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.1939 REMARK 3 T33: 0.1802 T12: -0.0562 REMARK 3 T13: 0.0375 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.6819 L22: 3.8186 REMARK 3 L33: 1.2787 L12: 1.4932 REMARK 3 L13: -0.3195 L23: -0.6077 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0710 S13: 0.1946 REMARK 3 S21: -0.0950 S22: 0.0281 S23: -0.0123 REMARK 3 S31: -0.1034 S32: 0.1390 S33: -0.0467 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 134 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.0975 -6.2528 76.6258 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.1598 REMARK 3 T33: 0.1351 T12: -0.0066 REMARK 3 T13: 0.0037 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.6981 L22: 1.2855 REMARK 3 L33: 1.3889 L12: 0.6295 REMARK 3 L13: -0.6675 L23: -0.4859 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.0541 S13: 0.0370 REMARK 3 S21: 0.4396 S22: 0.0278 S23: 0.0430 REMARK 3 S31: 0.0028 S32: 0.2070 S33: -0.0278 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 155 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.9483 -4.1687 79.0534 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2307 REMARK 3 T33: 0.2368 T12: -0.0010 REMARK 3 T13: 0.0549 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.4939 L22: 1.1059 REMARK 3 L33: 0.8330 L12: 0.1495 REMARK 3 L13: 0.1708 L23: 0.1768 REMARK 3 S TENSOR REMARK 3 S11: -0.2562 S12: -0.0523 S13: -0.2328 REMARK 3 S21: 0.5451 S22: 0.1424 S23: 0.1631 REMARK 3 S31: 0.1613 S32: 0.1160 S33: -0.0285 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 176 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.4752 -2.3794 71.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.2333 REMARK 3 T33: 0.2013 T12: -0.0161 REMARK 3 T13: 0.0021 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.9232 L22: 1.6584 REMARK 3 L33: 0.9444 L12: 0.0935 REMARK 3 L13: 0.0001 L23: 0.1788 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.0396 S13: -0.0067 REMARK 3 S21: 0.1300 S22: 0.0740 S23: -0.3879 REMARK 3 S31: 0.0320 S32: 0.2955 S33: -0.0247 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 202 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.4747 -10.1784 68.5470 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.1791 REMARK 3 T33: 0.1547 T12: 0.0098 REMARK 3 T13: 0.0082 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.3065 L22: 2.2545 REMARK 3 L33: 6.6349 L12: 0.3613 REMARK 3 L13: -1.0740 L23: -3.2050 REMARK 3 S TENSOR REMARK 3 S11: 0.1212 S12: 0.0308 S13: 0.0390 REMARK 3 S21: 0.2687 S22: 0.0325 S23: -0.0390 REMARK 3 S31: -0.0274 S32: 0.2792 S33: 0.0188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151082 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 35.671 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 5.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH4.5, 26.8% (V/V) REMARK 280 PEG 400, 13.4% (W/V) PEG 800, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.51750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 SER H 147 REMARK 465 THR H 148 REMARK 465 SER H 149 REMARK 465 GLY H 150 REMARK 465 CYS H 233 REMARK 465 ASP H 234 REMARK 465 LYS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 TRP L 1 REMARK 465 ALA L 2 REMARK 465 SER L 3 REMARK 465 SER L 4 REMARK 465 ARG L 55 REMARK 465 SER L 56 REMARK 465 SER L 57 REMARK 465 GLY L 58 REMARK 465 TRP L 59 REMARK 465 SER L 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 LYS H 44 CG CD CE NZ REMARK 470 ARG H 102 CG CD NE CZ NH1 NH2 REMARK 470 GLN H 122 CG CD OE1 NE2 REMARK 470 LYS H 146 CG CD CE NZ REMARK 470 THR H 208 OG1 CG2 REMARK 470 LYS H 218 CG CD CE NZ REMARK 470 SER H 232 OG REMARK 470 GLU L 5 CG CD OE1 OE2 REMARK 470 GLN L 18 CG CD OE1 NE2 REMARK 470 SER L 52 OG REMARK 470 SER L 53 OG REMARK 470 GLN L 54 CG CD OE1 NE2 REMARK 470 SER L 66 OG REMARK 470 THR L 71 OG1 CG2 REMARK 470 ARG L 77 CG CD NE CZ NH1 NH2 REMARK 470 GLN L 80 CG CD OE1 NE2 REMARK 470 LYS L 106 CG CD CE NZ REMARK 470 LEU L 110 CG CD1 CD2 REMARK 470 GLN L 112 CG CD OE1 NE2 REMARK 470 GLU L 127 CG CD OE1 OE2 REMARK 470 LYS L 160 CG CD CE NZ REMARK 470 SER L 172 OG REMARK 470 GLU L 187 CG CD OE1 OE2 REMARK 470 LYS L 193 CG CD CE NZ REMARK 470 THR L 213 OG1 CG2 REMARK 470 GLU L 214 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG L 38 O HOH L 305 1.54 REMARK 500 O GLU L 187 HG SER L 191 1.58 REMARK 500 NZ LYS H 134 O HOH H 301 1.83 REMARK 500 O HOH H 516 O HOH H 520 1.83 REMARK 500 O HOH L 404 O HOH L 459 1.87 REMARK 500 O HOH H 509 O HOH H 554 1.88 REMARK 500 O HOH L 427 O HOH L 433 1.90 REMARK 500 O HOH H 432 O HOH H 469 1.92 REMARK 500 OE2 GLU H 6 O HOH H 302 1.98 REMARK 500 O HOH H 535 O HOH H 541 1.98 REMARK 500 O HOH H 515 O HOH L 443 1.99 REMARK 500 O HOH H 471 O HOH H 500 1.99 REMARK 500 O SER L 52 O HOH L 301 1.99 REMARK 500 O HOH H 521 O HOH H 566 1.99 REMARK 500 N GLY H 151 O HOH H 303 2.00 REMARK 500 N VAL H 2 O HOH H 304 2.01 REMARK 500 O HOH L 438 O HOH L 477 2.05 REMARK 500 O HOH H 415 O HOH H 476 2.09 REMARK 500 OE2 GLU L 164 O HOH L 302 2.09 REMARK 500 O HOH L 328 O HOH L 390 2.09 REMARK 500 O HOH L 303 O HOH L 411 2.09 REMARK 500 O HOH H 307 O HOH H 492 2.11 REMARK 500 O HOH H 529 O HOH H 530 2.12 REMARK 500 O HOH H 325 O HOH H 444 2.12 REMARK 500 O HOH H 566 O HOH H 569 2.12 REMARK 500 OE1 GLU H 6 O TYR H 94 2.12 REMARK 500 OE2 GLU L 164 O HOH L 303 2.13 REMARK 500 O HOH H 375 O HOH H 556 2.13 REMARK 500 O HOH L 331 O HOH L 461 2.13 REMARK 500 O HOH H 537 O HOH H 545 2.14 REMARK 500 O HOH H 496 O HOH H 563 2.15 REMARK 500 O HOH H 481 O HOH H 552 2.17 REMARK 500 O HOH H 484 O HOH H 528 2.17 REMARK 500 CD GLU H 6 O HOH H 302 2.18 REMARK 500 O HOH L 348 O HOH L 451 2.18 REMARK 500 O HOH L 435 O HOH L 473 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 306 O HOH H 397 1655 2.01 REMARK 500 O HOH H 503 O HOH H 555 2847 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 67 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG H 67 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -13.17 84.70 REMARK 500 ASP L 155 -116.14 58.61 REMARK 500 ASN L 174 -0.77 73.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 5UD9 H 1 241 PDB 5UD9 5UD9 1 241 DBREF 5UD9 L 1 215 PDB 5UD9 5UD9 1 215 SEQRES 1 H 241 GLN VAL GLN LEU ARG GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 241 PRO SER GLU THR LEU SER LEU SER CYS THR VAL SER GLN SEQRES 3 H 241 ASP SER ARG PRO SER ASP HIS SER TRP THR TRP VAL ARG SEQRES 4 H 241 GLN SER PRO GLY LYS ALA LEU GLU TRP ILE GLY ASP ILE SEQRES 5 H 241 HIS TYR ASN GLY ALA THR THR TYR ASN PRO SER LEU ARG SEQRES 6 H 241 SER ARG VAL ARG ILE GLU LEU ASP GLN SER ILE PRO ARG SEQRES 7 H 241 PHE SER LEU LYS MET THR SER MET THR ALA ALA ASP THR SEQRES 8 H 241 GLY MET TYR TYR CYS ALA ARG ASN ALA ILE ARG ILE TYR SEQRES 9 H 241 GLY VAL VAL ALA LEU GLY GLU TRP PHE HIS TYR GLY MET SEQRES 10 H 241 ASP VAL TRP GLY GLN GLY THR ALA VAL THR VAL SER SER SEQRES 11 H 241 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 H 241 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 13 H 241 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 14 H 241 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 15 H 241 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 16 H 241 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 17 H 241 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 18 H 241 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 19 H 241 LYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 215 TRP ALA SER SER GLU LEU THR GLN PRO PRO SER VAL SER SEQRES 2 L 215 VAL SER PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY SEQRES 3 L 215 ALA PRO LEU THR SER ARG PHE THR TYR TRP TYR ARG GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO VAL LEU ILE ILE SER ARG SER SEQRES 5 L 215 SER GLN ARG SER SER GLY TRP SER GLY ARG PHE SER ALA SEQRES 6 L 215 SER TRP SER GLY THR THR VAL THR LEU THR ILE ARG GLY SEQRES 7 L 215 VAL GLN ALA ASP ASP GLU ALA ASP TYR TYR CYS GLN SER SEQRES 8 L 215 SER ASP THR SER ASP SER TYR LYS MET PHE GLY GLY GLY SEQRES 9 L 215 THR LYS LEU THR VAL LEU GLY GLN PRO ALA ALA ALA PRO SEQRES 10 L 215 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 215 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 215 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 215 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 215 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 215 SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 215 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 215 THR VAL ALA PRO THR GLU CYS FORMUL 3 HOH *449(H2 O) HELIX 1 AA1 ARG H 29 HIS H 33 5 5 HELIX 2 AA2 LEU H 64 SER H 66 5 3 HELIX 3 AA3 THR H 87 THR H 91 5 5 HELIX 4 AA4 VAL H 106 GLY H 110 5 5 HELIX 5 AA5 SER H 173 ALA H 175 5 3 HELIX 6 AA6 SER H 204 GLN H 209 1 6 HELIX 7 AA7 LYS H 218 ASN H 221 5 4 HELIX 8 AA8 ALA L 27 SER L 31 5 5 HELIX 9 AA9 GLN L 80 GLU L 84 5 5 HELIX 10 AB1 SER L 125 ALA L 131 1 7 HELIX 11 AB2 THR L 185 HIS L 192 1 8 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 ARG H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N ASP H 73 O ARG H 78 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 124 VAL H 128 1 O THR H 127 N VAL H 12 SHEET 3 AA2 6 GLY H 92 ILE H 103 -1 N GLY H 92 O VAL H 126 SHEET 4 AA2 6 SER H 34 GLN H 40 -1 N VAL H 38 O TYR H 95 SHEET 5 AA2 6 LEU H 46 ILE H 52 -1 O ILE H 52 N TRP H 35 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O THR H 59 N ASP H 51 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 124 VAL H 128 1 O THR H 127 N VAL H 12 SHEET 3 AA3 4 GLY H 92 ILE H 103 -1 N GLY H 92 O VAL H 126 SHEET 4 AA3 4 TRP H 112 TRP H 120 -1 O TYR H 115 N ALA H 100 SHEET 1 AA4 4 SER H 137 LEU H 141 0 SHEET 2 AA4 4 THR H 152 TYR H 162 -1 O LYS H 160 N SER H 137 SHEET 3 AA4 4 TYR H 193 PRO H 202 -1 O VAL H 199 N LEU H 155 SHEET 4 AA4 4 VAL H 180 THR H 182 -1 N HIS H 181 O VAL H 198 SHEET 1 AA5 4 SER H 137 LEU H 141 0 SHEET 2 AA5 4 THR H 152 TYR H 162 -1 O LYS H 160 N SER H 137 SHEET 3 AA5 4 TYR H 193 PRO H 202 -1 O VAL H 199 N LEU H 155 SHEET 4 AA5 4 VAL H 186 LEU H 187 -1 N VAL H 186 O SER H 194 SHEET 1 AA6 3 THR H 168 TRP H 171 0 SHEET 2 AA6 3 ILE H 212 HIS H 217 -1 O ASN H 214 N SER H 170 SHEET 3 AA6 3 THR H 222 ARG H 227 -1 O VAL H 224 N VAL H 215 SHEET 1 AA7 5 SER L 11 VAL L 14 0 SHEET 2 AA7 5 THR L 105 VAL L 109 1 O THR L 108 N VAL L 12 SHEET 3 AA7 5 ALA L 85 SER L 92 -1 N TYR L 87 O THR L 105 SHEET 4 AA7 5 TYR L 35 GLN L 39 -1 N TYR L 35 O GLN L 90 SHEET 5 AA7 5 VAL L 46 ILE L 49 -1 O ILE L 48 N TRP L 36 SHEET 1 AA8 4 SER L 11 VAL L 14 0 SHEET 2 AA8 4 THR L 105 VAL L 109 1 O THR L 108 N VAL L 12 SHEET 3 AA8 4 ALA L 85 SER L 92 -1 N TYR L 87 O THR L 105 SHEET 4 AA8 4 LYS L 99 PHE L 101 -1 O MET L 100 N SER L 91 SHEET 1 AA9 3 ALA L 20 SER L 25 0 SHEET 2 AA9 3 THR L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 3 AA9 3 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AB1 4 SER L 118 PHE L 122 0 SHEET 2 AB1 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AB1 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB1 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB2 4 SER L 118 PHE L 122 0 SHEET 2 AB2 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AB2 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB2 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AB3 4 SER L 157 PRO L 158 0 SHEET 2 AB3 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AB3 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AB3 4 SER L 204 VAL L 210 -1 O VAL L 206 N VAL L 199 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.13 SSBOND 2 CYS H 157 CYS H 213 1555 1555 2.04 SSBOND 3 CYS L 24 CYS L 89 1555 1555 2.08 SSBOND 4 CYS L 138 CYS L 197 1555 1555 2.04 CISPEP 1 ILE H 76 PRO H 77 0 -8.10 CISPEP 2 PHE H 163 PRO H 164 0 -4.86 CISPEP 3 GLU H 165 PRO H 166 0 -1.07 CISPEP 4 TYR L 144 PRO L 145 0 -2.54 CRYST1 46.124 71.035 69.543 90.00 98.48 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021681 0.000000 0.003233 0.00000 SCALE2 0.000000 0.014078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014539 0.00000