HEADER HYDROLASE 27-DEC-16 5UDM TITLE PHAGE-ASSOCIATED CELL WALL HYDROLASE PLYPY FROM STREPTOCOCCUS TITLE 2 PYOGENES, SPACE GROUP P6522 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE-ASSOCIATED CELL WALL HYDROLASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES MGAS5005; SOURCE 3 ORGANISM_TAXID: 293653; SOURCE 4 GENE: M5005_SPY1001; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21D KEYWDS LYSIN, D-ALANYL-L-ALANINE ENDOPEPTIDASE, CHAP DOMAIN, SRC HOMOLOGY 3 KEYWDS 2 DOMAIN SUPERFAMILY, SH3 DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.J.EDGAR,N.KOROTKOVA,K.V.KOROTKOV REVDAT 2 11-DEC-19 5UDM 1 REMARK REVDAT 1 27-DEC-17 5UDM 0 JRNL AUTH R.J.EDGAR,N.KOROTKOVA,K.V.KOROTKOV JRNL TITL STRUCTURE OF PHAGE-ASSOCIATED CELL WALL HYDROLASE PLYPY FROM JRNL TITL 2 STREPTOCOCCUS PYOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2481 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.5017 - 6.3587 0.98 2751 132 0.2094 0.1958 REMARK 3 2 6.3587 - 5.0479 0.99 2713 167 0.1762 0.1884 REMARK 3 3 5.0479 - 4.4100 0.99 2734 143 0.1528 0.1903 REMARK 3 4 4.4100 - 4.0069 0.99 2752 143 0.1646 0.1931 REMARK 3 5 4.0069 - 3.7197 0.99 2741 138 0.2006 0.2246 REMARK 3 6 3.7197 - 3.5004 1.00 2762 140 0.2105 0.2711 REMARK 3 7 3.5004 - 3.3251 0.99 2765 127 0.2339 0.2774 REMARK 3 8 3.3251 - 3.1804 1.00 2805 113 0.2437 0.2682 REMARK 3 9 3.1804 - 3.0580 1.00 2743 157 0.2386 0.3206 REMARK 3 10 3.0580 - 2.9524 1.00 2762 152 0.2502 0.2828 REMARK 3 11 2.9524 - 2.8601 1.00 2733 152 0.2787 0.2932 REMARK 3 12 2.8601 - 2.7784 1.00 2760 145 0.2931 0.3281 REMARK 3 13 2.7784 - 2.7052 1.00 2767 150 0.3102 0.3511 REMARK 3 14 2.7052 - 2.6392 0.98 2715 113 0.3298 0.3492 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3497 REMARK 3 ANGLE : 0.541 4759 REMARK 3 CHIRALITY : 0.046 500 REMARK 3 PLANARITY : 0.004 612 REMARK 3 DIHEDRAL : 13.469 1960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2:156 OR RESID REMARK 3 172:256)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2:17 OR RESID 25:109 REMARK 3 OR RESID 129:256)) REMARK 3 ATOM PAIRS NUMBER : 2437 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAY 1, 2016 REMARK 200 BUILT=20160617 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION MAY 1, 2016 REMARK 200 BUILT=20160617 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 61.485 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.236 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.09 REMARK 200 R MERGE FOR SHELL (I) : 0.93100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER 2.7.12 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 7.0, 0.9M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.57667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.86500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.28833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 136.44167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.15333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.57667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.28833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.86500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 136.44167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 18 REMARK 465 GLN B 19 REMARK 465 GLY B 20 REMARK 465 TYR B 21 REMARK 465 ASP B 22 REMARK 465 ALA B 23 REMARK 465 VAL B 111 REMARK 465 ASP B 112 REMARK 465 GLY B 113 REMARK 465 TYR B 114 REMARK 465 SER B 115 REMARK 465 ASP B 116 REMARK 465 ASN B 117 REMARK 465 ASN B 118 REMARK 465 GLY B 119 REMARK 465 ASP B 120 REMARK 465 GLY B 121 REMARK 465 ILE B 122 REMARK 465 ASN B 123 REMARK 465 ASP B 124 REMARK 465 THR B 157 REMARK 465 SER B 158 REMARK 465 SER B 159 REMARK 465 GLU B 160 REMARK 465 LYS B 161 REMARK 465 GLN B 162 REMARK 465 SER B 163 REMARK 465 GLN B 164 REMARK 465 SER B 165 REMARK 465 GLN B 166 REMARK 465 ALA B 167 REMARK 465 PRO B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 PHE B 171 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 GLY A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 ASN A 110 REMARK 465 VAL A 111 REMARK 465 ASP A 112 REMARK 465 GLY A 113 REMARK 465 TYR A 114 REMARK 465 SER A 115 REMARK 465 ASP A 116 REMARK 465 ASN A 117 REMARK 465 ASN A 118 REMARK 465 GLY A 119 REMARK 465 ASP A 120 REMARK 465 GLY A 121 REMARK 465 ILE A 122 REMARK 465 ASN A 123 REMARK 465 ASP A 124 REMARK 465 GLN A 125 REMARK 465 PHE A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 GLU A 160 REMARK 465 LYS A 161 REMARK 465 GLN A 162 REMARK 465 SER A 163 REMARK 465 GLN A 164 REMARK 465 SER A 165 REMARK 465 GLN A 166 REMARK 465 ALA A 167 REMARK 465 PRO A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 PHE A 171 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS B 173 OD1 ASP B 176 1.58 REMARK 500 OE2 GLU A 177 HO1 GOL A 302 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 30 -64.05 -92.08 REMARK 500 ASP B 141 -158.40 -152.45 REMARK 500 PRO B 194 46.82 -76.12 REMARK 500 ASN B 248 80.85 -154.54 REMARK 500 GLN A 30 -65.41 -92.03 REMARK 500 ASP A 141 -159.44 -151.81 REMARK 500 PRO A 194 42.72 -79.51 REMARK 500 ASN A 248 80.70 -154.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UDN RELATED DB: PDB DBREF1 5UDM B 2 254 UNP A0A0C6FZU1_STRPY DBREF2 5UDM B A0A0C6FZU1 2 254 DBREF1 5UDM A 2 254 UNP A0A0C6FZU1_STRPY DBREF2 5UDM A A0A0C6FZU1 2 254 SEQADV 5UDM LEU B 255 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM GLU B 256 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS B 257 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS B 258 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS B 259 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS B 260 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS B 261 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS B 262 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM LEU A 255 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM GLU A 256 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS A 257 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS A 258 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS A 259 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS A 260 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS A 261 UNP A0A0C6FZU EXPRESSION TAG SEQADV 5UDM HIS A 262 UNP A0A0C6FZU EXPRESSION TAG SEQRES 1 B 261 ALA THR VAL SER GLU VAL ILE SER TYR TRP ARG GLY LEU SEQRES 2 B 261 ALA ASP THR GLY GLN GLY TYR ASP ALA ASP LEU ALA TRP SEQRES 3 B 261 GLY TRP GLN CYS ALA ASP VAL THR ASN GLY THR THR THR SEQRES 4 B 261 ASN PHE PHE GLY VAL THR LEU TRP GLY ASN ALA ILE ASP SEQRES 5 B 261 LEU LEU ASP SER ALA LYS ALA GLN GLY LEU GLU VAL ILE SEQRES 6 B 261 TYR ASP ALA PRO GLY ILE ASN PRO LYS ALA GLY ASP LEU SEQRES 7 B 261 PHE VAL MSE PHE THR TYR GLY HIS PRO TYR GLY HIS THR SEQRES 8 B 261 GLY ILE ILE ILE ALA ASP SER ASP GLY TYR THR ILE GLN SEQRES 9 B 261 THR ILE GLU GLN ASN VAL ASP GLY TYR SER ASP ASN ASN SEQRES 10 B 261 GLY ASP GLY ILE ASN ASP GLN PHE GLN VAL GLY GLY PRO SEQRES 11 B 261 ALA ARG TYR VAL THR ARG ALA PHE SER ASP GLY ASP GLY SEQRES 12 B 261 TYR ILE VAL GLY TRP ILE ARG PRO PRO TYR SER ASP THR SEQRES 13 B 261 SER SER GLU LYS GLN SER GLN SER GLN ALA PRO SER GLY SEQRES 14 B 261 PHE ARG LYS LEU LYS ASP GLU VAL GLY THR PHE GLU VAL SEQRES 15 B 261 MSE VAL PRO ALA LEU ASN VAL ARG ARG GLU PRO SER LEU SEQRES 16 B 261 ASN GLY GLU ILE VAL ALA CYS TYR GLN TYR GLY MSE THR SEQRES 17 B 261 GLY THR TYR ASP SER VAL TYR VAL GLY ASP GLY TYR ILE SEQRES 18 B 261 TRP VAL SER TYR VAL GLY ALA SER GLY MSE ARG ASN TYR SEQRES 19 B 261 MSE ALA VAL GLY ASP ALA ASP GLY ASP TYR ASN VAL ASN SEQRES 20 B 261 PRO TYR CYS LYS PHE TYR LEU GLU HIS HIS HIS HIS HIS SEQRES 21 B 261 HIS SEQRES 1 A 261 ALA THR VAL SER GLU VAL ILE SER TYR TRP ARG GLY LEU SEQRES 2 A 261 ALA ASP THR GLY GLN GLY TYR ASP ALA ASP LEU ALA TRP SEQRES 3 A 261 GLY TRP GLN CYS ALA ASP VAL THR ASN GLY THR THR THR SEQRES 4 A 261 ASN PHE PHE GLY VAL THR LEU TRP GLY ASN ALA ILE ASP SEQRES 5 A 261 LEU LEU ASP SER ALA LYS ALA GLN GLY LEU GLU VAL ILE SEQRES 6 A 261 TYR ASP ALA PRO GLY ILE ASN PRO LYS ALA GLY ASP LEU SEQRES 7 A 261 PHE VAL MSE PHE THR TYR GLY HIS PRO TYR GLY HIS THR SEQRES 8 A 261 GLY ILE ILE ILE ALA ASP SER ASP GLY TYR THR ILE GLN SEQRES 9 A 261 THR ILE GLU GLN ASN VAL ASP GLY TYR SER ASP ASN ASN SEQRES 10 A 261 GLY ASP GLY ILE ASN ASP GLN PHE GLN VAL GLY GLY PRO SEQRES 11 A 261 ALA ARG TYR VAL THR ARG ALA PHE SER ASP GLY ASP GLY SEQRES 12 A 261 TYR ILE VAL GLY TRP ILE ARG PRO PRO TYR SER ASP THR SEQRES 13 A 261 SER SER GLU LYS GLN SER GLN SER GLN ALA PRO SER GLY SEQRES 14 A 261 PHE ARG LYS LEU LYS ASP GLU VAL GLY THR PHE GLU VAL SEQRES 15 A 261 MSE VAL PRO ALA LEU ASN VAL ARG ARG GLU PRO SER LEU SEQRES 16 A 261 ASN GLY GLU ILE VAL ALA CYS TYR GLN TYR GLY MSE THR SEQRES 17 A 261 GLY THR TYR ASP SER VAL TYR VAL GLY ASP GLY TYR ILE SEQRES 18 A 261 TRP VAL SER TYR VAL GLY ALA SER GLY MSE ARG ASN TYR SEQRES 19 A 261 MSE ALA VAL GLY ASP ALA ASP GLY ASP TYR ASN VAL ASN SEQRES 20 A 261 PRO TYR CYS LYS PHE TYR LEU GLU HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS MODRES 5UDM MSE B 82 MET MODIFIED RESIDUE MODRES 5UDM MSE B 184 MET MODIFIED RESIDUE MODRES 5UDM MSE B 208 MET MODIFIED RESIDUE MODRES 5UDM MSE B 232 MET MODIFIED RESIDUE MODRES 5UDM MSE B 236 MET MODIFIED RESIDUE MODRES 5UDM MSE A 82 MET MODIFIED RESIDUE MODRES 5UDM MSE A 184 MET MODIFIED RESIDUE MODRES 5UDM MSE A 208 MET MODIFIED RESIDUE MODRES 5UDM MSE A 232 MET MODIFIED RESIDUE MODRES 5UDM MSE A 236 MET MODIFIED RESIDUE HET MSE B 82 17 HET MSE B 184 17 HET MSE B 208 17 HET MSE B 232 17 HET MSE B 236 17 HET MSE A 82 17 HET MSE A 184 17 HET MSE A 208 17 HET MSE A 232 17 HET MSE A 236 17 HET GOL B 301 14 HET GOL B 302 14 HET GOL A 301 14 HET GOL A 302 14 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 THR B 3 THR B 17 1 15 HELIX 2 AA2 ASP B 33 GLY B 44 1 12 HELIX 3 AA3 ASN B 50 ILE B 52 5 3 HELIX 4 AA4 ASP B 53 GLN B 61 1 9 HELIX 5 AA5 THR A 3 THR A 17 1 15 HELIX 6 AA6 ASP A 33 GLY A 44 1 12 HELIX 7 AA7 ASN A 50 ILE A 52 5 3 HELIX 8 AA8 ASP A 53 GLN A 61 1 9 SHEET 1 AA1 6 GLU B 64 TYR B 67 0 SHEET 2 AA1 6 GLY B 144 ARG B 151 -1 O TRP B 149 N ILE B 66 SHEET 3 AA1 6 LEU B 79 THR B 84 -1 N LEU B 79 O ILE B 150 SHEET 4 AA1 6 HIS B 91 ILE B 95 -1 O HIS B 91 N MSE B 82 SHEET 5 AA1 6 THR B 103 GLN B 109 -1 O ILE B 107 N ILE B 94 SHEET 6 AA1 6 ALA B 132 ALA B 138 -1 O VAL B 135 N THR B 106 SHEET 1 AA212 TYR B 245 PRO B 249 0 SHEET 2 AA212 ARG B 233 ASP B 242 -1 N ASP B 240 O VAL B 247 SHEET 3 AA212 TYR B 221 VAL B 227 -1 N TYR B 226 O ASN B 234 SHEET 4 AA212 THR B 209 GLY B 218 -1 N TYR B 216 O TRP B 223 SHEET 5 AA212 LYS B 173 VAL B 183 -1 N PHE B 181 O GLY B 210 SHEET 6 AA212 CYS B 251 GLU B 256 -1 O TYR B 254 N THR B 180 SHEET 7 AA212 CYS A 251 LEU A 255 -1 O LEU A 255 N LEU B 255 SHEET 8 AA212 LYS A 173 VAL A 183 -1 N THR A 180 O TYR A 254 SHEET 9 AA212 THR A 209 GLY A 218 -1 O GLY A 210 N PHE A 181 SHEET 10 AA212 TYR A 221 VAL A 227 -1 O TRP A 223 N TYR A 216 SHEET 11 AA212 ARG A 233 ASP A 242 -1 O ASN A 234 N TYR A 226 SHEET 12 AA212 TYR A 245 PRO A 249 -1 O TYR A 245 N ASP A 242 SHEET 1 AA3 2 ALA B 187 ARG B 191 0 SHEET 2 AA3 2 ILE B 200 GLN B 205 -1 O VAL B 201 N VAL B 190 SHEET 1 AA4 6 GLU A 64 TYR A 67 0 SHEET 2 AA4 6 GLY A 144 ARG A 151 -1 O TRP A 149 N ILE A 66 SHEET 3 AA4 6 LEU A 79 THR A 84 -1 N LEU A 79 O ILE A 150 SHEET 4 AA4 6 HIS A 91 ILE A 95 -1 O HIS A 91 N MSE A 82 SHEET 5 AA4 6 THR A 103 GLU A 108 -1 O ILE A 107 N ILE A 94 SHEET 6 AA4 6 ARG A 133 ALA A 138 -1 O VAL A 135 N THR A 106 SHEET 1 AA5 2 ALA A 187 ARG A 191 0 SHEET 2 AA5 2 ILE A 200 GLN A 205 -1 O TYR A 204 N LEU A 188 LINK C VAL B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N PHE B 83 1555 1555 1.33 LINK C VAL B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N VAL B 185 1555 1555 1.33 LINK C GLY B 207 N MSE B 208 1555 1555 1.33 LINK C MSE B 208 N THR B 209 1555 1555 1.33 LINK C GLY B 231 N MSE B 232 1555 1555 1.33 LINK C MSE B 232 N ARG B 233 1555 1555 1.33 LINK C TYR B 235 N MSE B 236 1555 1555 1.33 LINK C MSE B 236 N ALA B 237 1555 1555 1.33 LINK C VAL A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N PHE A 83 1555 1555 1.33 LINK C VAL A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N VAL A 185 1555 1555 1.33 LINK C GLY A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N THR A 209 1555 1555 1.33 LINK C GLY A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N ARG A 233 1555 1555 1.33 LINK C TYR A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N ALA A 237 1555 1555 1.33 SITE 1 AC1 4 PRO B 70 GLY B 71 ASN B 73 GLY B 101 SITE 1 AC2 5 LYS B 175 GLU B 177 TYR B 212 ASN B 246 SITE 2 AC2 5 PHE B 253 SITE 1 AC3 4 PRO A 70 GLY A 71 ASN A 73 GLY A 101 SITE 1 AC4 6 LYS A 175 GLU A 177 TYR A 212 ASN A 246 SITE 2 AC4 6 PHE A 253 HOH A 401 CRYST1 122.970 122.970 163.730 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008132 0.004695 0.000000 0.00000 SCALE2 0.000000 0.009390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006108 0.00000