HEADER TRANSCRIPTION 04-JAN-17 5UFH TITLE THE CRYSTAL STRUCTURE OF A LACI-TYPE TRANSCRIPTION REGULATOR FROM TITLE 2 BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS DSM 10140 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACI-TYPE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS (STRAIN SOURCE 3 AD011); SOURCE 4 ORGANISM_TAXID: 442563; SOURCE 5 STRAIN: AD011; SOURCE 6 GENE: BLA_0054; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG73 KEYWDS HUMAN MICROBIOME, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MC SG, MCSG, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,H.LI,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 01-JAN-20 5UFH 1 REMARK REVDAT 2 13-SEP-17 5UFH 1 REMARK REVDAT 1 18-JAN-17 5UFH 0 JRNL AUTH K.TAN,H.LI,M.ENDRES,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A LACI-TYPE TRANSCRIPTION REGULATOR JRNL TITL 2 FROM BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS DSM 10140 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 46658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5765 - 3.7232 0.97 2712 124 0.1568 0.1644 REMARK 3 2 3.7232 - 2.9573 0.99 2701 123 0.1491 0.1698 REMARK 3 3 2.9573 - 2.5841 0.99 2665 151 0.1628 0.1757 REMARK 3 4 2.5841 - 2.3481 0.98 2662 135 0.1588 0.1768 REMARK 3 5 2.3481 - 2.1799 0.98 2647 147 0.1561 0.1767 REMARK 3 6 2.1799 - 2.0515 0.98 2605 146 0.1503 0.1676 REMARK 3 7 2.0515 - 1.9488 0.97 2611 153 0.1580 0.2009 REMARK 3 8 1.9488 - 1.8640 0.97 2616 138 0.1680 0.1829 REMARK 3 9 1.8640 - 1.7923 0.97 2634 117 0.1717 0.2090 REMARK 3 10 1.7923 - 1.7305 0.97 2604 130 0.1773 0.2205 REMARK 3 11 1.7305 - 1.6764 0.96 2568 159 0.1814 0.1919 REMARK 3 12 1.6764 - 1.6285 0.96 2569 135 0.1896 0.2089 REMARK 3 13 1.6285 - 1.5856 0.96 2593 145 0.2004 0.2320 REMARK 3 14 1.5856 - 1.5470 0.96 2565 129 0.2056 0.2438 REMARK 3 15 1.5470 - 1.5118 0.96 2558 143 0.2233 0.2459 REMARK 3 16 1.5118 - 1.4796 0.95 2540 138 0.2443 0.2336 REMARK 3 17 1.4796 - 1.4500 0.92 2475 120 0.2686 0.2797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2285 REMARK 3 ANGLE : 1.130 3083 REMARK 3 CHIRALITY : 0.094 334 REMARK 3 PLANARITY : 0.007 424 REMARK 3 DIHEDRAL : 15.465 795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5304 27.7399 21.4684 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.2089 REMARK 3 T33: 0.1797 T12: -0.0086 REMARK 3 T13: -0.0380 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.1162 L22: 3.4320 REMARK 3 L33: 3.3904 L12: -0.2498 REMARK 3 L13: 1.2140 L23: 1.2557 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: -0.0302 S13: -0.1192 REMARK 3 S21: -0.0733 S22: 0.2608 S23: -0.3559 REMARK 3 S31: 0.2595 S32: 0.3414 S33: -0.2868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5653 49.2284 6.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1461 REMARK 3 T33: 0.1066 T12: -0.0025 REMARK 3 T13: 0.0034 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.3741 L22: 1.0782 REMARK 3 L33: 1.4237 L12: 1.1071 REMARK 3 L13: 0.2901 L23: 0.2780 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: 0.0929 S13: 0.0202 REMARK 3 S21: -0.1048 S22: 0.0215 S23: 0.0235 REMARK 3 S31: -0.0106 S32: -0.0068 S33: 0.0717 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7361 49.2788 18.4219 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1257 REMARK 3 T33: 0.1054 T12: 0.0105 REMARK 3 T13: 0.0116 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.1691 L22: 1.5831 REMARK 3 L33: 1.2912 L12: 0.7418 REMARK 3 L13: 0.5549 L23: 0.0719 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0500 S13: 0.0464 REMARK 3 S21: 0.0110 S22: -0.0449 S23: -0.0063 REMARK 3 S31: -0.0248 S32: -0.0291 S33: 0.0489 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 22.574 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS:HCL, 6 M AMMONIUM NITRATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.16300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.08550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.16300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.08550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.20796 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.44304 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 PHE A 18 REMARK 465 LYS A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 VAL A 24 REMARK 465 ILE A 25 REMARK 465 ASN A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 MSE A 31 REMARK 465 ARG A 32 REMARK 465 GLU A 33 REMARK 465 SER A 34 REMARK 465 THR A 35 REMARK 465 ARG A 36 REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 VAL A 39 REMARK 465 LEU A 40 REMARK 465 GLU A 41 REMARK 465 ALA A 42 REMARK 465 MSE A 43 REMARK 465 ASP A 44 REMARK 465 LYS A 45 REMARK 465 LEU A 46 REMARK 465 ASN A 47 REMARK 465 TYR A 48 REMARK 465 THR A 49 REMARK 465 ILE A 50 REMARK 465 ASN A 51 REMARK 465 LEU A 52 REMARK 465 SER A 53 REMARK 465 ALA A 54 REMARK 465 ARG A 55 REMARK 465 SER A 56 REMARK 465 LEU A 57 REMARK 465 LYS A 58 REMARK 465 THR A 59 REMARK 465 GLY A 60 REMARK 465 THR A 61 REMARK 465 THR A 62 REMARK 465 HIS A 133 REMARK 465 SER A 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 89 CD NE CZ NH1 NH2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 HIS A 105 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 109 CZ NH1 NH2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 275 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 235 OH TYR A 293 2656 2.04 REMARK 500 O HOH A 684 O HOH A 684 2656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 232 65.70 -116.77 REMARK 500 ASP A 286 -32.03 142.25 REMARK 500 ARG A 339 -151.94 -130.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 423 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC108873 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: APC108873 RELATED DB: TARGETTRACK DBREF 5UFH A 2 344 UNP B8DV56 B8DV56_BIFA0 2 344 SEQADV 5UFH SER A -2 UNP B8DV56 EXPRESSION TAG SEQADV 5UFH ASN A -1 UNP B8DV56 EXPRESSION TAG SEQADV 5UFH ALA A 0 UNP B8DV56 EXPRESSION TAG SEQADV 5UFH MSE A 1 UNP B8DV56 EXPRESSION TAG SEQRES 1 A 347 SER ASN ALA MSE ALA LYS GLY VAL THR ILE LYS ASP VAL SEQRES 2 A 347 ALA ALA GLU ALA GLY VAL SER PHE LYS THR VAL SER ASN SEQRES 3 A 347 VAL ILE ASN GLY THR GLY SER MSE ARG GLU SER THR ARG SEQRES 4 A 347 GLY ARG VAL LEU GLU ALA MSE ASP LYS LEU ASN TYR THR SEQRES 5 A 347 ILE ASN LEU SER ALA ARG SER LEU LYS THR GLY THR THR SEQRES 6 A 347 GLY LEU LEU GLY LEU ALA ILE PHE ASP PHE SER GLN PRO SEQRES 7 A 347 PHE ALA SER TYR LEU ALA ASP GLN ILE ILE VAL CSO ALA SEQRES 8 A 347 ARG GLU HIS HIS TYR GLY VAL ILE ILE ASN THR TYR GLY SEQRES 9 A 347 GLN ASN GLU HIS GLY LEU ALA ARG ALA MSE ARG GLN ALA SEQRES 10 A 347 ASN ASN LEU ALA ALA ASP GLY TRP ILE VAL PHE ALA ASP SEQRES 11 A 347 HIS ALA MSE GLY GLN HIS SER LYS MSE LEU ASP GLN SER SEQRES 12 A 347 TYR PRO LEU VAL LEU THR GLY ASP TRP ASP ALA TYR GLY SEQRES 13 A 347 LYS VAL ASP GLN VAL THR MSE PRO ASN VAL GLU ALA MSE SEQRES 14 A 347 ARG TYR THR THR ASN ARG LEU LEU ASP SER GLY TYR ARG SEQRES 15 A 347 SER ILE ALA LEU PHE GLY ALA ASP GLY SER LEU GLY ALA SEQRES 16 A 347 ARG HIS TYR ARG GLN ALA THR GLU GLY THR GLN GLU LEU SEQRES 17 A 347 ARG VAL GLN GLY TYR MSE GLN ALA TYR GLU GLU HIS GLY SEQRES 18 A 347 ILE GLU ALA ARG MSE ASP MSE LEU PHE SER GLY GLY LEU SEQRES 19 A 347 LEU THR SER ASP SER GLY VAL ARG ALA THR ASN LEU MSE SEQRES 20 A 347 MSE ASP GLN GLY VAL ARG PRO ASP ALA ILE ILE CYS LEU SEQRES 21 A 347 ASN ASP ALA MSE ALA LEU GLY ALA LEU HIS GLN LEU GLN SEQRES 22 A 347 VAL ARG GLY ILE ARG VAL PRO ASP ASP VAL GLN VAL VAL SEQRES 23 A 347 GLY PHE ASP ASN VAL PRO GLU ALA THR TYR ALA ASN PRO SEQRES 24 A 347 SER LEU THR THR ILE ASP PRO HIS ILE ASP SER TYR ALA SEQRES 25 A 347 ARG HIS ALA VAL ASP MSE LEU ILE GLU ARG ILE GLN GLY SEQRES 26 A 347 TYR ASP GLY ALA LYS ARG VAL TYR THR SER ASP PHE THR SEQRES 27 A 347 LEU VAL GLU ARG SER SER THR SER LEU MODRES 5UFH CSO A 87 CYS MODIFIED RESIDUE MODRES 5UFH MSE A 111 MET MODIFIED RESIDUE MODRES 5UFH MSE A 130 MET MODIFIED RESIDUE MODRES 5UFH MSE A 136 MET MODIFIED RESIDUE MODRES 5UFH MSE A 160 MET MODIFIED RESIDUE MODRES 5UFH MSE A 166 MET MODIFIED RESIDUE MODRES 5UFH MSE A 211 MET MODIFIED RESIDUE MODRES 5UFH MSE A 223 MET MODIFIED RESIDUE MODRES 5UFH MSE A 225 MET MODIFIED RESIDUE MODRES 5UFH MSE A 244 MET MODIFIED RESIDUE MODRES 5UFH MSE A 245 MET MODIFIED RESIDUE MODRES 5UFH MSE A 261 MET MODIFIED RESIDUE MODRES 5UFH MSE A 315 MET MODIFIED RESIDUE HET CSO A 87 7 HET MSE A 111 8 HET MSE A 130 8 HET MSE A 136 8 HET MSE A 160 8 HET MSE A 166 8 HET MSE A 211 8 HET MSE A 223 8 HET MSE A 225 8 HET MSE A 244 8 HET MSE A 245 8 HET MSE A 261 8 HET MSE A 315 8 HET GOL A 401 6 HET NO3 A 402 4 HET NO3 A 403 4 HET NO3 A 404 4 HET NO3 A 405 4 HET NO3 A 406 4 HET NO3 A 407 4 HET NO3 A 408 4 HET NO3 A 409 4 HET NO3 A 410 4 HET NO3 A 411 4 HET NO3 A 412 4 HET NO3 A 413 4 HET NO3 A 414 4 HET NO3 A 415 4 HET NO3 A 416 4 HET NO3 A 417 4 HET NO3 A 418 4 HET NO3 A 419 4 HET NO3 A 420 4 HET NO3 A 421 4 HET NO3 A 422 4 HET NO3 A 423 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM NO3 NITRATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 NO3 22(N O3 1-) FORMUL 25 HOH *186(H2 O) HELIX 1 AA1 GLN A 74 HIS A 91 1 18 HELIX 2 AA2 HIS A 105 ALA A 114 1 10 HELIX 3 AA3 ASN A 115 LEU A 117 5 3 HELIX 4 AA4 PRO A 161 SER A 176 1 16 HELIX 5 AA5 ASP A 187 LEU A 190 5 4 HELIX 6 AA6 GLY A 191 ALA A 198 1 8 HELIX 7 AA7 GLY A 201 HIS A 217 1 17 HELIX 8 AA8 ARG A 222 ASP A 224 5 3 HELIX 9 AA9 THR A 233 GLN A 247 1 15 HELIX 10 AB1 ASN A 258 ARG A 272 1 15 HELIX 11 AB2 PRO A 289 ALA A 294 1 6 HELIX 12 AB3 HIS A 304 GLN A 321 1 18 SHEET 1 AA1 6 GLY A 94 THR A 99 0 SHEET 2 AA1 6 LEU A 64 ILE A 69 1 N LEU A 65 O GLY A 94 SHEET 3 AA1 6 GLY A 121 PHE A 125 1 O ILE A 123 N GLY A 66 SHEET 4 AA1 6 LEU A 143 THR A 146 1 O THR A 146 N VAL A 124 SHEET 5 AA1 6 ASP A 156 THR A 159 1 O VAL A 158 N LEU A 145 SHEET 6 AA1 6 VAL A 329 THR A 331 1 O TYR A 330 N THR A 159 SHEET 1 AA2 6 LEU A 226 PHE A 227 0 SHEET 2 AA2 6 ILE A 181 PHE A 184 1 N LEU A 183 O PHE A 227 SHEET 3 AA2 6 ALA A 253 CYS A 256 1 O ILE A 255 N ALA A 182 SHEET 4 AA2 6 GLN A 281 PHE A 285 1 O VAL A 283 N CYS A 256 SHEET 5 AA2 6 THR A 299 ASP A 302 1 O THR A 299 N GLY A 284 SHEET 6 AA2 6 THR A 335 VAL A 337 -1 O THR A 335 N ASP A 302 LINK C VAL A 86 N CSO A 87 1555 1555 1.33 LINK C CSO A 87 N ALA A 88 1555 1555 1.33 LINK C ALA A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N ARG A 112 1555 1555 1.33 LINK C ALA A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N GLY A 131 1555 1555 1.33 LINK C LYS A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N LEU A 137 1555 1555 1.33 LINK C THR A 159 N MSE A 160 1555 1555 1.34 LINK C MSE A 160 N PRO A 161 1555 1555 1.33 LINK C ALA A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N ARG A 167 1555 1555 1.34 LINK C TYR A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N GLN A 212 1555 1555 1.34 LINK C AARG A 222 N MSE A 223 1555 1555 1.33 LINK C BARG A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N ASP A 224 1555 1555 1.34 LINK C ASP A 224 N MSE A 225 1555 1555 1.32 LINK C MSE A 225 N LEU A 226 1555 1555 1.34 LINK C LEU A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N ASP A 246 1555 1555 1.34 LINK C ALA A 260 N MSE A 261 1555 1555 1.34 LINK C MSE A 261 N ALA A 262 1555 1555 1.35 LINK C ASP A 314 N MSE A 315 1555 1555 1.32 LINK C MSE A 315 N LEU A 316 1555 1555 1.35 CISPEP 1 VAL A 276 PRO A 277 0 6.05 CISPEP 2 ASN A 295 PRO A 296 0 1.46 SITE 1 AC1 7 PHE A 76 ARG A 206 LEU A 232 ASN A 258 SITE 2 AC1 7 ASP A 286 HOH A 547 HOH A 585 SITE 1 AC2 8 PRO A 161 ASN A 162 VAL A 163 GLU A 164 SITE 2 AC2 8 THR A 331 NO3 A 407 HOH A 593 HOH A 609 SITE 1 AC3 6 ARG A 250 ARG A 272 ARG A 310 NO3 A 404 SITE 2 AC3 6 NO3 A 422 HOH A 586 SITE 1 AC4 9 MSE A 245 ASP A 246 GLY A 248 ARG A 250 SITE 2 AC4 9 ARG A 272 HIS A 311 NO3 A 403 HOH A 502 SITE 3 AC4 9 HOH A 548 SITE 1 AC5 9 GLN A 74 PRO A 75 PHE A 76 ASN A 258 SITE 2 AC5 9 ASP A 259 ALA A 260 ASP A 286 VAL A 288 SITE 3 AC5 9 HOH A 547 SITE 1 AC6 6 GLU A 164 ARG A 167 TYR A 168 ASN A 171 SITE 2 AC6 6 HOH A 508 HOH A 570 SITE 1 AC7 6 VAL A 163 GLU A 164 ARG A 167 NO3 A 402 SITE 2 AC7 6 HOH A 503 HOH A 645 SITE 1 AC8 4 HIS A 304 SER A 307 TYR A 330 ASP A 333 SITE 1 AC9 5 HIS A 304 ILE A 305 ASP A 306 SER A 307 SITE 2 AC9 5 NO3 A 422 SITE 1 AD1 8 PHE A 70 TYR A 100 ASN A 103 GLY A 106 SITE 2 AD1 8 LEU A 107 ASP A 127 HIS A 128 NO3 A 411 SITE 1 AD2 6 HIS A 105 LEU A 107 ALA A 108 HIS A 128 SITE 2 AD2 6 MSE A 136 NO3 A 410 SITE 1 AD3 6 PRO A 142 LEU A 143 ARG A 319 LYS A 327 SITE 2 AD3 6 HOH A 509 HOH A 534 SITE 1 AD4 5 LEU A 266 GLN A 270 ASN A 295 PRO A 296 SITE 2 AD4 5 HOH A 516 SITE 1 AD5 3 ARG A 250 ASP A 279 HOH A 550 SITE 1 AD6 7 ASP A 246 GLN A 247 HIS A 311 MSE A 315 SITE 2 AD6 7 TYR A 330 HOH A 522 HOH A 600 SITE 1 AD7 5 HIS A 91 ARG A 239 ASN A 242 ASP A 314 SITE 2 AD7 5 GLU A 318 SITE 1 AD8 5 SER A 228 GLY A 229 GLY A 230 ARG A 239 SITE 2 AD8 5 TYR A 323 SITE 1 AD9 5 SER A 180 ILE A 181 TYR A 214 ARG A 222 SITE 2 AD9 5 HOH A 590 SITE 1 AE1 3 LEU A 174 HOH A 513 HOH A 627 SITE 1 AE2 5 ASP A 175 SER A 176 LEU A 344 HOH A 541 SITE 2 AE2 5 HOH A 598 SITE 1 AE3 4 TYR A 168 PHE A 334 THR A 335 LEU A 336 SITE 1 AE4 5 SER A 307 ARG A 310 NO3 A 403 NO3 A 409 SITE 2 AE4 5 HOH A 502 SITE 1 AE5 6 LEU A 226 PHE A 227 SER A 228 TYR A 323 SITE 2 AE5 6 HOH A 583 HOH A 616 CRYST1 72.326 60.171 67.188 90.00 109.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013826 0.000000 0.004821 0.00000 SCALE2 0.000000 0.016619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015762 0.00000