HEADER APOPTOSIS 07-JAN-17 5UG6 TITLE PERFORIN C2 DOMAIN - T431D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERFORIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN (UNP RESIDUES 410-535); COMPND 5 SYNONYM: P1,CYTOLYSIN,LYMPHOCYTE PORE-FORMING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRF1, PFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10F'; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAGEMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOMB3X KEYWDS C2, PERFORIN, CALCIUM, PROTEOSTASIS, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.H.P.LAW,P.J.CONROY,I.VOSKOBOINIK,J.C.WHISSTOCK REVDAT 5 04-OCT-23 5UG6 1 REMARK REVDAT 4 12-SEP-18 5UG6 1 JRNL REVDAT 3 18-APR-18 5UG6 1 REMARK REVDAT 2 21-FEB-18 5UG6 1 JRNL REVDAT 1 07-FEB-18 5UG6 0 JRNL AUTH A.J.BRENNAN,R.H.P.LAW,P.J.CONROY,T.NOORI,N.LUKOYANOVA, JRNL AUTH 2 H.SAIBIL,H.YAGITA,A.CICCONE,S.VERSCHOOR,J.C.WHISSTOCK, JRNL AUTH 3 J.A.TRAPANI,I.VOSKOBOINIK JRNL TITL PERFORIN PROTEOSTASIS IS REGULATED THROUGH ITS C2 DOMAIN: JRNL TITL 2 SUPRA-PHYSIOLOGICAL CELL DEATH MEDIATED BY T431D-PERFORIN. JRNL REF CELL DEATH DIFFER. V. 25 1517 2018 JRNL REFN ISSN 1476-5403 JRNL PMID 29416110 JRNL DOI 10.1038/S41418-018-0057-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2702 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1910 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2587 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.26 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 115 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.79010 REMARK 3 B22 (A**2) : 6.88780 REMARK 3 B33 (A**2) : 0.90230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.174 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.148 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.143 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 982 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1333 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 324 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 24 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 147 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 982 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 119 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1154 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|410 - A|419 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.6092 -29.1146 -9.4360 REMARK 3 T TENSOR REMARK 3 T11: 0.0456 T22: 0.0786 REMARK 3 T33: 0.0552 T12: 0.0366 REMARK 3 T13: -0.0178 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 7.4925 L22: 5.3489 REMARK 3 L33: 0.0000 L12: -4.3810 REMARK 3 L13: 2.5297 L23: -0.7956 REMARK 3 S TENSOR REMARK 3 S11: -0.1963 S12: -0.1114 S13: 0.2663 REMARK 3 S21: -0.0648 S22: 0.1555 S23: -0.4640 REMARK 3 S31: -0.0841 S32: 0.2237 S33: 0.0407 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|420 - A|442 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.7468 -10.6473 -14.1672 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: -0.0695 REMARK 3 T33: -0.0371 T12: 0.0035 REMARK 3 T13: 0.0133 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 3.0980 L22: 0.6203 REMARK 3 L33: 2.9156 L12: 0.8167 REMARK 3 L13: 0.9830 L23: -0.6373 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.3139 S13: -0.1320 REMARK 3 S21: 0.0643 S22: -0.1139 S23: 0.2020 REMARK 3 S31: -0.2996 S32: -0.1083 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|443 - A|448 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.0261 -16.3372 -17.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0633 REMARK 3 T33: 0.1562 T12: -0.0110 REMARK 3 T13: -0.0417 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 10.0841 L22: 5.8572 REMARK 3 L33: 13.1505 L12: -7.3542 REMARK 3 L13: 2.3106 L23: -3.3193 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 1.0017 S13: 0.5597 REMARK 3 S21: 0.0019 S22: -0.5110 S23: -0.9391 REMARK 3 S31: -0.4606 S32: 0.7283 S33: 0.4919 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|449 - A|462 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.6694 -11.3153 -19.7414 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.0468 REMARK 3 T33: 0.0439 T12: -0.0143 REMARK 3 T13: -0.0102 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 6.1884 L22: 4.1981 REMARK 3 L33: 6.0142 L12: -2.4642 REMARK 3 L13: -0.1741 L23: -0.3410 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 0.3186 S13: -0.1956 REMARK 3 S21: -0.2473 S22: -0.0766 S23: 0.3010 REMARK 3 S31: -0.0628 S32: 0.1927 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|463 - A|470 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.0783 -25.3668 -14.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.0482 REMARK 3 T33: 0.0622 T12: -0.0145 REMARK 3 T13: -0.0174 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.9119 L22: 2.7029 REMARK 3 L33: 4.2962 L12: -1.7697 REMARK 3 L13: 0.3449 L23: -2.2191 REMARK 3 S TENSOR REMARK 3 S11: 0.1749 S12: 0.0267 S13: -0.2141 REMARK 3 S21: -0.1688 S22: 0.0347 S23: -0.0044 REMARK 3 S31: 0.0797 S32: 0.0092 S33: -0.2096 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|471 - A|476 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.9208 -22.0329 -4.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.1472 REMARK 3 T33: 0.1991 T12: -0.0341 REMARK 3 T13: -0.1587 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.1279 L22: 1.0415 REMARK 3 L33: 0.0000 L12: 2.0871 REMARK 3 L13: 2.0274 L23: -0.2282 REMARK 3 S TENSOR REMARK 3 S11: 0.1711 S12: -0.1327 S13: 0.0919 REMARK 3 S21: 0.2045 S22: -0.0039 S23: -0.3191 REMARK 3 S31: -0.4747 S32: 0.2304 S33: -0.1672 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|477 - A|498 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.8515 -6.2083 -13.0952 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.0821 REMARK 3 T33: 0.1096 T12: 0.0147 REMARK 3 T13: -0.0246 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.5884 L22: 2.5213 REMARK 3 L33: 6.3353 L12: -0.7537 REMARK 3 L13: 3.7142 L23: -4.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.2486 S12: 0.1198 S13: 0.2945 REMARK 3 S21: 0.2973 S22: -0.1384 S23: -0.2595 REMARK 3 S31: -0.4131 S32: -0.0021 S33: 0.3870 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|499 - A|510 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.1379 -21.6059 -3.5405 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.0014 REMARK 3 T33: 0.0087 T12: 0.0077 REMARK 3 T13: -0.0203 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.4718 L22: 1.3386 REMARK 3 L33: 0.0000 L12: -4.2025 REMARK 3 L13: -0.0946 L23: 0.5995 REMARK 3 S TENSOR REMARK 3 S11: -0.1749 S12: -0.2960 S13: -0.0929 REMARK 3 S21: 0.3564 S22: 0.2599 S23: 0.0944 REMARK 3 S31: -0.1446 S32: 0.0378 S33: -0.0850 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|511 - A|535 } REMARK 3 ORIGIN FOR THE GROUP (A): 3.9819 -24.7503 -5.4289 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: -0.0150 REMARK 3 T33: -0.0101 T12: -0.0233 REMARK 3 T13: 0.0189 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.7552 L22: 4.4052 REMARK 3 L33: 2.1011 L12: -1.8506 REMARK 3 L13: 0.4503 L23: 0.7530 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: 0.0697 S13: -0.1876 REMARK 3 S21: 0.1001 S22: -0.0018 S23: 0.1235 REMARK 3 S31: 0.1123 S32: 0.1154 S33: -0.1702 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.32500 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3NSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM IODIDE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.88700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.43350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.01350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.43350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.88700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.01350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 428 REMARK 465 ASP A 429 REMARK 465 ALA A 430 REMARK 465 GLY A 536 REMARK 465 GLN A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 GLN A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 GLY A 547 REMARK 465 ALA A 548 REMARK 465 TYR A 549 REMARK 465 PRO A 550 REMARK 465 TYR A 551 REMARK 465 ASP A 552 REMARK 465 VAL A 553 REMARK 465 PRO A 554 REMARK 465 ASP A 555 REMARK 465 TYR A 556 REMARK 465 ALA A 557 REMARK 465 SER A 558 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 431 CG OD1 OD2 REMARK 470 ASP A 489 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 467 -141.62 64.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 770 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UG7 RELATED DB: PDB DBREF 5UG6 A 410 535 UNP P10820 PERF_MOUSE 410 535 SEQADV 5UG6 ALA A 427 UNP P10820 TRP 427 ENGINEERED MUTATION SEQADV 5UG6 ALA A 430 UNP P10820 TYR 430 ENGINEERED MUTATION SEQADV 5UG6 ASP A 431 UNP P10820 THR 431 ENGINEERED MUTATION SEQADV 5UG6 ALA A 486 UNP P10820 TYR 486 ENGINEERED MUTATION SEQADV 5UG6 ALA A 488 UNP P10820 TRP 488 ENGINEERED MUTATION SEQADV 5UG6 GLY A 536 UNP P10820 EXPRESSION TAG SEQADV 5UG6 GLN A 537 UNP P10820 EXPRESSION TAG SEQADV 5UG6 ALA A 538 UNP P10820 EXPRESSION TAG SEQADV 5UG6 GLY A 539 UNP P10820 EXPRESSION TAG SEQADV 5UG6 GLN A 540 UNP P10820 EXPRESSION TAG SEQADV 5UG6 HIS A 541 UNP P10820 EXPRESSION TAG SEQADV 5UG6 HIS A 542 UNP P10820 EXPRESSION TAG SEQADV 5UG6 HIS A 543 UNP P10820 EXPRESSION TAG SEQADV 5UG6 HIS A 544 UNP P10820 EXPRESSION TAG SEQADV 5UG6 HIS A 545 UNP P10820 EXPRESSION TAG SEQADV 5UG6 HIS A 546 UNP P10820 EXPRESSION TAG SEQADV 5UG6 GLY A 547 UNP P10820 EXPRESSION TAG SEQADV 5UG6 ALA A 548 UNP P10820 EXPRESSION TAG SEQADV 5UG6 TYR A 549 UNP P10820 EXPRESSION TAG SEQADV 5UG6 PRO A 550 UNP P10820 EXPRESSION TAG SEQADV 5UG6 TYR A 551 UNP P10820 EXPRESSION TAG SEQADV 5UG6 ASP A 552 UNP P10820 EXPRESSION TAG SEQADV 5UG6 VAL A 553 UNP P10820 EXPRESSION TAG SEQADV 5UG6 PRO A 554 UNP P10820 EXPRESSION TAG SEQADV 5UG6 ASP A 555 UNP P10820 EXPRESSION TAG SEQADV 5UG6 TYR A 556 UNP P10820 EXPRESSION TAG SEQADV 5UG6 ALA A 557 UNP P10820 EXPRESSION TAG SEQADV 5UG6 SER A 558 UNP P10820 EXPRESSION TAG SEQRES 1 A 149 GLN ARG GLY LEU ALA HIS LEU VAL VAL SER ASN PHE ARG SEQRES 2 A 149 ALA GLU HIS LEU ALA GLY ASP ALA ASP THR ALA THR ASP SEQRES 3 A 149 ALA TYR LEU LYS VAL PHE PHE GLY GLY GLN GLU PHE ARG SEQRES 4 A 149 THR GLY VAL VAL TRP ASN ASN ASN ASN PRO ARG TRP THR SEQRES 5 A 149 ASP LYS MET ASP PHE GLU ASN VAL LEU LEU SER THR GLY SEQRES 6 A 149 GLY PRO LEU ARG VAL GLN VAL TRP ASP ALA ASP ALA GLY SEQRES 7 A 149 ALA ASP ASP ASP LEU LEU GLY SER CYS ASP ARG SER PRO SEQRES 8 A 149 HIS SER GLY PHE HIS GLU VAL THR CYS GLU LEU ASN HIS SEQRES 9 A 149 GLY ARG VAL LYS PHE SER TYR HIS ALA LYS CYS LEU PRO SEQRES 10 A 149 HIS LEU THR GLY GLY THR CYS LEU GLU GLY GLN ALA GLY SEQRES 11 A 149 GLN HIS HIS HIS HIS HIS HIS GLY ALA TYR PRO TYR ASP SEQRES 12 A 149 VAL PRO ASP TYR ALA SER HET IOD A 601 1 HETNAM IOD IODIDE ION FORMUL 2 IOD I 1- FORMUL 3 HOH *70(H2 O) HELIX 1 AA1 ASP A 485 ALA A 488 5 4 SHEET 1 AA1 4 MET A 464 LEU A 470 0 SHEET 2 AA1 4 LEU A 413 GLU A 424 -1 N VAL A 418 O MET A 464 SHEET 3 AA1 4 ARG A 515 CYS A 524 -1 O LYS A 517 N ARG A 422 SHEET 4 AA1 4 GLY A 503 GLU A 510 -1 N VAL A 507 O PHE A 518 SHEET 1 AA2 4 GLN A 445 ARG A 448 0 SHEET 2 AA2 4 ALA A 436 PHE A 442 -1 N VAL A 440 O PHE A 447 SHEET 3 AA2 4 LEU A 477 ASP A 483 -1 O TRP A 482 N TYR A 437 SHEET 4 AA2 4 ASP A 491 ARG A 498 -1 O GLY A 494 N VAL A 481 SSBOND 1 CYS A 496 CYS A 509 1555 1555 2.04 SSBOND 2 CYS A 524 CYS A 533 1555 1555 2.07 SITE 1 AC1 6 ASP A 465 ASP A 485 HOH A 701 HOH A 722 SITE 2 AC1 6 HOH A 728 HOH A 764 CRYST1 27.774 66.027 74.867 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013357 0.00000