HEADER APOPTOSIS 07-JAN-17 5UG7 TITLE CALCIUM BOUND PERFORIN C2 DOMAIN - T431D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERFORIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN (UNP RESIDUES 410-535); COMPND 5 SYNONYM: P1,CYTOLYSIN,LYMPHOCYTE PORE-FORMING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRF1, PFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10F'; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAGEMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOMB3X KEYWDS C2, PERFORIN, CALCIUM, PROTEOSTASIS, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.H.P.LAW,P.J.CONROY,I.VOSKOBOINIK,J.C.WHISSTOCK REVDAT 5 04-OCT-23 5UG7 1 LINK REVDAT 4 12-SEP-18 5UG7 1 JRNL REVDAT 3 18-APR-18 5UG7 1 REMARK REVDAT 2 21-FEB-18 5UG7 1 JRNL REVDAT 1 07-FEB-18 5UG7 0 JRNL AUTH A.J.BRENNAN,R.H.P.LAW,P.J.CONROY,T.NOORI,N.LUKOYANOVA, JRNL AUTH 2 H.SAIBIL,H.YAGITA,A.CICCONE,S.VERSCHOOR,J.C.WHISSTOCK, JRNL AUTH 3 J.A.TRAPANI,I.VOSKOBOINIK JRNL TITL PERFORIN PROTEOSTASIS IS REGULATED THROUGH ITS C2 DOMAIN: JRNL TITL 2 SUPRA-PHYSIOLOGICAL CELL DEATH MEDIATED BY T431D-PERFORIN. JRNL REF CELL DEATH DIFFER. V. 25 1517 2018 JRNL REFN ISSN 1476-5403 JRNL PMID 29416110 JRNL DOI 10.1038/S41418-018-0057-Z REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 626 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2974 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1850 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2829 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 979 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.75760 REMARK 3 B22 (A**2) : -1.71960 REMARK 3 B33 (A**2) : -8.03790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.62840 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.142 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.125 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.136 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1007 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1369 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 334 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 28 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 151 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1007 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 121 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1124 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|410 - A|442 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.7095 27.7544 13.2769 REMARK 3 T TENSOR REMARK 3 T11: 0.0726 T22: 0.0978 REMARK 3 T33: 0.0943 T12: -0.0073 REMARK 3 T13: -0.0234 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.2832 L22: 0.7196 REMARK 3 L33: 0.5445 L12: 0.6711 REMARK 3 L13: -0.0951 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: 0.2692 S13: 0.2189 REMARK 3 S21: -0.0114 S22: 0.0326 S23: 0.0350 REMARK 3 S31: 0.0184 S32: -0.1574 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|443 - A|448 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.8322 23.6741 3.6434 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.2940 REMARK 3 T33: 0.1629 T12: -0.0327 REMARK 3 T13: -0.1372 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 5.5662 L22: 2.8940 REMARK 3 L33: 9.5288 L12: -2.1993 REMARK 3 L13: -4.1616 L23: -0.4573 REMARK 3 S TENSOR REMARK 3 S11: 0.1864 S12: 0.4185 S13: -0.1643 REMARK 3 S21: -0.7406 S22: -0.3163 S23: 0.7710 REMARK 3 S31: 0.6383 S32: 0.2768 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|449 - A|470 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.0740 31.4285 9.9939 REMARK 3 T TENSOR REMARK 3 T11: 0.1702 T22: 0.1604 REMARK 3 T33: 0.1661 T12: -0.0120 REMARK 3 T13: -0.0288 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.5516 L22: 1.9693 REMARK 3 L33: 0.7788 L12: 1.7167 REMARK 3 L13: -0.1100 L23: 0.5730 REMARK 3 S TENSOR REMARK 3 S11: -0.2716 S12: 0.6265 S13: 0.3535 REMARK 3 S21: -0.2398 S22: 0.1549 S23: 0.0491 REMARK 3 S31: -0.0945 S32: -0.0269 S33: 0.1167 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|471 - A|476 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.4755 20.3568 9.7814 REMARK 3 T TENSOR REMARK 3 T11: 0.3370 T22: 0.4021 REMARK 3 T33: 0.1993 T12: -0.0901 REMARK 3 T13: -0.0789 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 3.6729 L22: 0.0000 REMARK 3 L33: -0.5980 L12: -2.3076 REMARK 3 L13: -1.1209 L23: -2.5284 REMARK 3 S TENSOR REMARK 3 S11: 0.4702 S12: 0.2746 S13: -0.2964 REMARK 3 S21: -0.3804 S22: -0.2875 S23: 0.1997 REMARK 3 S31: 0.3819 S32: -0.5688 S33: -0.1828 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|477 - A|490 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.2208 20.6836 11.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.0499 REMARK 3 T33: 0.1040 T12: -0.0297 REMARK 3 T13: -0.0088 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 7.8133 L22: 2.2192 REMARK 3 L33: 1.2926 L12: -2.3377 REMARK 3 L13: 4.0039 L23: -1.2756 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.0189 S13: -0.5058 REMARK 3 S21: -0.3171 S22: 0.0508 S23: 0.0892 REMARK 3 S31: 0.2418 S32: -0.1144 S33: -0.0792 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|491 - A|498 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.7442 20.3609 17.3012 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.2357 REMARK 3 T33: 0.2505 T12: -0.0424 REMARK 3 T13: -0.0230 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 10.1883 L22: 0.2529 REMARK 3 L33: -0.3895 L12: -1.2563 REMARK 3 L13: 0.0522 L23: 0.2088 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: -0.2189 S13: -0.5463 REMARK 3 S21: 0.1060 S22: -0.0047 S23: 0.1876 REMARK 3 S31: 0.0750 S32: -0.5511 S33: -0.1027 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|499 - A|510 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.6706 29.5569 18.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.2083 REMARK 3 T33: 0.2175 T12: 0.0306 REMARK 3 T13: -0.0123 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 8.0184 L22: 0.0000 REMARK 3 L33: 1.6365 L12: 1.6204 REMARK 3 L13: 2.7343 L23: -0.4827 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.1246 S13: -0.0517 REMARK 3 S21: 0.1337 S22: 0.0241 S23: 0.2152 REMARK 3 S31: 0.1089 S32: -0.7041 S33: -0.0970 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|511 - A|524 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.1081 29.2503 17.7916 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.1180 REMARK 3 T33: 0.1482 T12: 0.0097 REMARK 3 T13: -0.0089 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 9.4350 L22: 0.0000 REMARK 3 L33: 5.4986 L12: -0.1419 REMARK 3 L13: 6.0895 L23: -0.5278 REMARK 3 S TENSOR REMARK 3 S11: -0.2008 S12: -0.2223 S13: 0.2403 REMARK 3 S21: 0.0061 S22: 0.0700 S23: -0.0123 REMARK 3 S31: 0.0405 S32: -0.5393 S33: 0.1308 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|525 - A|535 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.2517 28.8675 9.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.4438 REMARK 3 T33: 0.1582 T12: 0.0085 REMARK 3 T13: -0.0127 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 8.4197 L22: 5.9988 REMARK 3 L33: 4.1039 L12: 3.6911 REMARK 3 L13: -2.5035 L23: -1.0669 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.3435 S13: 0.4309 REMARK 3 S21: -0.0601 S22: 0.1116 S23: -0.1161 REMARK 3 S31: 0.0475 S32: -0.6656 S33: -0.0420 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12655 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MGCL2, 0.1 M NA-HEPES PH7.5, 10% REMARK 280 W/V PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 16.99970 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.65600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.33750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 16.99970 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.65600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 42.33750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 536 REMARK 465 GLN A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 GLN A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 GLY A 547 REMARK 465 ALA A 548 REMARK 465 TYR A 549 REMARK 465 PRO A 550 REMARK 465 TYR A 551 REMARK 465 ASP A 552 REMARK 465 VAL A 553 REMARK 465 PRO A 554 REMARK 465 ASP A 555 REMARK 465 TYR A 556 REMARK 465 ALA A 557 REMARK 465 SER A 558 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 435 72.09 -119.20 REMARK 500 GLU A 467 -138.13 61.29 REMARK 500 ASP A 485 -97.89 -120.81 REMARK 500 HIS A 527 -8.54 91.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 428 O REMARK 620 2 ASP A 429 OD1 74.9 REMARK 620 3 ASP A 483 OD2 86.8 78.6 REMARK 620 4 ASP A 485 OD1 143.9 72.4 72.2 REMARK 620 5 ASP A 485 OD2 160.1 123.2 89.2 51.3 REMARK 620 6 ASP A 491 OD2 87.8 161.9 106.3 125.7 74.6 REMARK 620 7 HOH A 718 O 99.4 87.0 162.4 93.9 90.2 90.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 429 OD2 REMARK 620 2 THR A 432 OG1 78.6 REMARK 620 3 ALA A 433 O 87.1 91.8 REMARK 620 4 ASP A 435 OD1 115.0 166.0 86.0 REMARK 620 5 ASP A 435 OD2 69.8 142.4 106.2 51.0 REMARK 620 6 ASN A 454 OD1 162.1 87.0 82.8 79.0 127.2 REMARK 620 7 GLU A 535 OE2 77.9 139.5 54.7 47.1 52.2 107.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 429 OD1 REMARK 620 2 ASP A 429 OD2 51.2 REMARK 620 3 ASP A 435 OD2 120.3 70.6 REMARK 620 4 ASP A 483 OD1 84.0 90.9 84.4 REMARK 620 5 ASP A 483 OD2 72.2 114.5 132.0 49.1 REMARK 620 6 ALA A 484 O 151.6 156.9 87.6 94.8 85.6 REMARK 620 7 ASP A 485 OD1 74.6 115.4 155.3 118.4 69.4 81.3 REMARK 620 8 HOH A 752 O 101.0 79.8 78.7 162.6 148.3 88.6 79.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UG6 RELATED DB: PDB DBREF 5UG7 A 410 535 UNP P10820 PERF_MOUSE 410 535 SEQADV 5UG7 ALA A 427 UNP P10820 TRP 427 ENGINEERED MUTATION SEQADV 5UG7 ALA A 430 UNP P10820 TYR 430 ENGINEERED MUTATION SEQADV 5UG7 ASP A 431 UNP P10820 THR 431 ENGINEERED MUTATION SEQADV 5UG7 ALA A 486 UNP P10820 TYR 486 ENGINEERED MUTATION SEQADV 5UG7 ALA A 488 UNP P10820 TRP 488 ENGINEERED MUTATION SEQADV 5UG7 GLY A 536 UNP P10820 EXPRESSION TAG SEQADV 5UG7 GLN A 537 UNP P10820 EXPRESSION TAG SEQADV 5UG7 ALA A 538 UNP P10820 EXPRESSION TAG SEQADV 5UG7 GLY A 539 UNP P10820 EXPRESSION TAG SEQADV 5UG7 GLN A 540 UNP P10820 EXPRESSION TAG SEQADV 5UG7 HIS A 541 UNP P10820 EXPRESSION TAG SEQADV 5UG7 HIS A 542 UNP P10820 EXPRESSION TAG SEQADV 5UG7 HIS A 543 UNP P10820 EXPRESSION TAG SEQADV 5UG7 HIS A 544 UNP P10820 EXPRESSION TAG SEQADV 5UG7 HIS A 545 UNP P10820 EXPRESSION TAG SEQADV 5UG7 HIS A 546 UNP P10820 EXPRESSION TAG SEQADV 5UG7 GLY A 547 UNP P10820 EXPRESSION TAG SEQADV 5UG7 ALA A 548 UNP P10820 EXPRESSION TAG SEQADV 5UG7 TYR A 549 UNP P10820 EXPRESSION TAG SEQADV 5UG7 PRO A 550 UNP P10820 EXPRESSION TAG SEQADV 5UG7 TYR A 551 UNP P10820 EXPRESSION TAG SEQADV 5UG7 ASP A 552 UNP P10820 EXPRESSION TAG SEQADV 5UG7 VAL A 553 UNP P10820 EXPRESSION TAG SEQADV 5UG7 PRO A 554 UNP P10820 EXPRESSION TAG SEQADV 5UG7 ASP A 555 UNP P10820 EXPRESSION TAG SEQADV 5UG7 TYR A 556 UNP P10820 EXPRESSION TAG SEQADV 5UG7 ALA A 557 UNP P10820 EXPRESSION TAG SEQADV 5UG7 SER A 558 UNP P10820 EXPRESSION TAG SEQRES 1 A 149 GLN ARG GLY LEU ALA HIS LEU VAL VAL SER ASN PHE ARG SEQRES 2 A 149 ALA GLU HIS LEU ALA GLY ASP ALA ASP THR ALA THR ASP SEQRES 3 A 149 ALA TYR LEU LYS VAL PHE PHE GLY GLY GLN GLU PHE ARG SEQRES 4 A 149 THR GLY VAL VAL TRP ASN ASN ASN ASN PRO ARG TRP THR SEQRES 5 A 149 ASP LYS MET ASP PHE GLU ASN VAL LEU LEU SER THR GLY SEQRES 6 A 149 GLY PRO LEU ARG VAL GLN VAL TRP ASP ALA ASP ALA GLY SEQRES 7 A 149 ALA ASP ASP ASP LEU LEU GLY SER CYS ASP ARG SER PRO SEQRES 8 A 149 HIS SER GLY PHE HIS GLU VAL THR CYS GLU LEU ASN HIS SEQRES 9 A 149 GLY ARG VAL LYS PHE SER TYR HIS ALA LYS CYS LEU PRO SEQRES 10 A 149 HIS LEU THR GLY GLY THR CYS LEU GLU GLY GLN ALA GLY SEQRES 11 A 149 GLN HIS HIS HIS HIS HIS HIS GLY ALA TYR PRO TYR ASP SEQRES 12 A 149 VAL PRO ASP TYR ALA SER HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *90(H2 O) SHEET 1 AA1 4 MET A 464 LEU A 470 0 SHEET 2 AA1 4 LEU A 413 GLU A 424 -1 N VAL A 418 O MET A 464 SHEET 3 AA1 4 ARG A 515 CYS A 524 -1 O LYS A 517 N ARG A 422 SHEET 4 AA1 4 GLY A 503 GLU A 510 -1 N VAL A 507 O PHE A 518 SHEET 1 AA2 4 GLN A 445 ARG A 448 0 SHEET 2 AA2 4 ALA A 436 PHE A 442 -1 N VAL A 440 O PHE A 447 SHEET 3 AA2 4 LEU A 477 ASP A 483 -1 O GLN A 480 N LYS A 439 SHEET 4 AA2 4 ASP A 491 ARG A 498 -1 O ARG A 498 N LEU A 477 SSBOND 1 CYS A 496 CYS A 509 1555 1555 2.00 SSBOND 2 CYS A 524 CYS A 533 1555 1555 2.04 LINK O GLY A 428 CA CA A 603 1555 1555 2.42 LINK OD2 ASP A 429 CA CA A 601 1555 1555 2.39 LINK OD1 ASP A 429 CA CA A 602 1555 1555 2.41 LINK OD2 ASP A 429 CA CA A 602 1555 1555 2.59 LINK OD1 ASP A 429 CA CA A 603 1555 1555 2.39 LINK OG1 THR A 432 CA CA A 601 1555 1555 2.41 LINK O ALA A 433 CA CA A 601 1555 1555 2.31 LINK OD1 ASP A 435 CA CA A 601 1555 1555 2.53 LINK OD2 ASP A 435 CA CA A 601 1555 1555 2.58 LINK OD2 ASP A 435 CA CA A 602 1555 1555 2.32 LINK OD1 ASN A 454 CA CA A 601 1555 1555 2.35 LINK OD1 ASP A 483 CA CA A 602 1555 1555 2.66 LINK OD2 ASP A 483 CA CA A 602 1555 1555 2.61 LINK OD2 ASP A 483 CA CA A 603 1555 1555 2.28 LINK O ALA A 484 CA CA A 602 1555 1555 2.31 LINK OD1 ASP A 485 CA CA A 602 1555 1555 2.47 LINK OD1 ASP A 485 CA CA A 603 1555 1555 2.61 LINK OD2 ASP A 485 CA CA A 603 1555 1555 2.45 LINK OD2 ASP A 491 CA CA A 603 1555 1555 2.32 LINK OE2 GLU A 535 CA CA A 601 1555 1455 2.15 LINK CA CA A 602 O HOH A 752 1555 1655 2.37 LINK CA CA A 603 O HOH A 718 1555 4645 2.41 SITE 1 AC1 6 ASP A 429 THR A 432 ALA A 433 ASP A 435 SITE 2 AC1 6 ASN A 454 GLU A 535 SITE 1 AC2 7 ASP A 429 ASP A 435 ASP A 483 ALA A 484 SITE 2 AC2 7 ASP A 485 CA A 603 HOH A 752 SITE 1 AC3 7 GLY A 428 ASP A 429 ASP A 483 ASP A 485 SITE 2 AC3 7 ASP A 491 CA A 602 HOH A 718 CRYST1 50.996 31.312 86.364 90.00 101.35 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019609 0.000000 0.003936 0.00000 SCALE2 0.000000 0.031937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011810 0.00000