HEADER LYASE 16-JAN-17 5UIZ TITLE STRUCTURE OF T.FUSCA AA10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AA10A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 2021; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AA10A, POLYSACCHARIDE MONOOXYGENASE, OXIDOREDUCTASE, E7, LPMO, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.ALAHUHTA,V.V.LUNIN REVDAT 2 20-DEC-17 5UIZ 1 SPRSDE JRNL REVDAT 1 01-FEB-17 5UIZ 0 SPRSDE 20-DEC-17 5UIZ 4GBO JRNL AUTH N.KRUER-ZERHUSEN,M.ALAHUHTA,V.V.LUNIN,M.E.HIMMEL,Y.J.BOMBLE, JRNL AUTH 2 D.B.WILSON JRNL TITL STRUCTURE OF A THERMOBIFIDA FUSCA LYTIC POLYSACCHARIDE JRNL TITL 2 MONOOXYGENASE AND MUTAGENESIS OF KEY RESIDUES. JRNL REF BIOTECHNOL BIOFUELS V. 10 243 2017 JRNL REFN ESSN 1754-6834 JRNL PMID 29213309 JRNL DOI 10.1186/S13068-017-0925-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 27187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3269 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2650 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4500 ; 1.648 ; 1.864 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6172 ; 1.050 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.393 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;36.699 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;14.660 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3814 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1556 ; 1.465 ; 2.018 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1555 ; 1.455 ; 2.016 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1966 ; 2.149 ; 3.015 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1967 ; 2.153 ; 3.017 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1713 ; 2.210 ; 2.279 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1713 ; 2.210 ; 2.279 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2535 ; 3.365 ; 3.338 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4036 ; 4.875 ;24.612 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3967 ; 4.713 ;24.302 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HELIOS MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 40.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15480 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.62160 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 4.3 M SODIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.56400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.78200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.78200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.56400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 569 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 ARG A 3 REMARK 465 TYR A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 HIS A 10 REMARK 465 ARG A 11 REMARK 465 TRP A 12 REMARK 465 THR A 13 REMARK 465 VAL A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PHE A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 LEU A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 THR A 28 REMARK 465 GLN A 29 REMARK 465 TRP A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 SER A 35 REMARK 465 ALA A 36 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 ARG B 3 REMARK 465 TYR B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 HIS B 10 REMARK 465 ARG B 11 REMARK 465 TRP B 12 REMARK 465 THR B 13 REMARK 465 VAL B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 17 REMARK 465 ALA B 18 REMARK 465 VAL B 19 REMARK 465 LEU B 20 REMARK 465 PHE B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 LEU B 24 REMARK 465 LEU B 25 REMARK 465 GLY B 26 REMARK 465 LEU B 27 REMARK 465 THR B 28 REMARK 465 GLN B 29 REMARK 465 TRP B 30 REMARK 465 THR B 31 REMARK 465 ALA B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 SER B 35 REMARK 465 ALA B 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 66 O HOH A 405 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 461 O HOH A 461 5555 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 71 CE3 TRP A 71 CZ3 0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 53.55 -153.41 REMARK 500 ASN A 83 49.70 -104.98 REMARK 500 ASN A 83 57.51 -106.80 REMARK 500 ASP B 57 49.33 -154.75 REMARK 500 ASP B 67 70.66 -150.72 REMARK 500 ASN B 77 99.90 -165.75 REMARK 500 ASN B 83 52.64 -99.23 REMARK 500 MET B 209 -140.50 52.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 580 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 581 DISTANCE = 7.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 37 N REMARK 620 2 HIS A 37 ND1 92.8 REMARK 620 3 HIS A 144 NE2 96.9 162.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 37 N REMARK 620 2 HIS B 37 ND1 85.7 REMARK 620 3 HOH B 550 O 167.4 103.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 313 DBREF 5UIZ A 1 222 UNP Q47QG3 Q47QG3_THEFY 1 222 DBREF 5UIZ B 1 222 UNP Q47QG3 Q47QG3_THEFY 1 222 SEQRES 1 A 222 MET HIS ARG TYR SER ARG THR GLY LYS HIS ARG TRP THR SEQRES 2 A 222 VAL ARG ALA LEU ALA VAL LEU PHE THR ALA LEU LEU GLY SEQRES 3 A 222 LEU THR GLN TRP THR ALA PRO ALA SER ALA HIS GLY SER SEQRES 4 A 222 VAL ILE ASN PRO ALA THR ARG ASN TYR GLY CYS TRP LEU SEQRES 5 A 222 ARG TRP GLY HIS ASP HIS LEU ASN PRO ASN MET GLN TYR SEQRES 6 A 222 GLU ASP PRO MET CYS TRP GLN ALA TRP GLN ASP ASN PRO SEQRES 7 A 222 ASN ALA MET TRP ASN TRP ASN GLY LEU TYR ARG ASP TRP SEQRES 8 A 222 VAL GLY GLY ASN HIS ARG ALA ALA LEU PRO ASP GLY GLN SEQRES 9 A 222 LEU CYS SER GLY GLY LEU THR GLU GLY GLY ARG TYR ARG SEQRES 10 A 222 SER MET ASP ALA VAL GLY PRO TRP LYS THR THR ASP VAL SEQRES 11 A 222 ASN ASN THR PHE THR ILE HIS LEU TYR ASP GLN ALA SER SEQRES 12 A 222 HIS GLY ALA ASP TYR PHE LEU VAL TYR VAL THR LYS GLN SEQRES 13 A 222 GLY PHE ASP PRO THR THR GLN PRO LEU THR TRP ASP SER SEQRES 14 A 222 LEU GLU LEU VAL HIS GLN THR GLY SER TYR PRO PRO ALA SEQRES 15 A 222 GLN ASN ILE GLN PHE THR VAL HIS ALA PRO ASN ARG SER SEQRES 16 A 222 GLY ARG HIS VAL VAL PHE THR ILE TRP LYS ALA SER HIS SEQRES 17 A 222 MET ASP GLN THR TYR TYR LEU CYS SER ASP VAL ASN PHE SEQRES 18 A 222 VAL SEQRES 1 B 222 MET HIS ARG TYR SER ARG THR GLY LYS HIS ARG TRP THR SEQRES 2 B 222 VAL ARG ALA LEU ALA VAL LEU PHE THR ALA LEU LEU GLY SEQRES 3 B 222 LEU THR GLN TRP THR ALA PRO ALA SER ALA HIS GLY SER SEQRES 4 B 222 VAL ILE ASN PRO ALA THR ARG ASN TYR GLY CYS TRP LEU SEQRES 5 B 222 ARG TRP GLY HIS ASP HIS LEU ASN PRO ASN MET GLN TYR SEQRES 6 B 222 GLU ASP PRO MET CYS TRP GLN ALA TRP GLN ASP ASN PRO SEQRES 7 B 222 ASN ALA MET TRP ASN TRP ASN GLY LEU TYR ARG ASP TRP SEQRES 8 B 222 VAL GLY GLY ASN HIS ARG ALA ALA LEU PRO ASP GLY GLN SEQRES 9 B 222 LEU CYS SER GLY GLY LEU THR GLU GLY GLY ARG TYR ARG SEQRES 10 B 222 SER MET ASP ALA VAL GLY PRO TRP LYS THR THR ASP VAL SEQRES 11 B 222 ASN ASN THR PHE THR ILE HIS LEU TYR ASP GLN ALA SER SEQRES 12 B 222 HIS GLY ALA ASP TYR PHE LEU VAL TYR VAL THR LYS GLN SEQRES 13 B 222 GLY PHE ASP PRO THR THR GLN PRO LEU THR TRP ASP SER SEQRES 14 B 222 LEU GLU LEU VAL HIS GLN THR GLY SER TYR PRO PRO ALA SEQRES 15 B 222 GLN ASN ILE GLN PHE THR VAL HIS ALA PRO ASN ARG SER SEQRES 16 B 222 GLY ARG HIS VAL VAL PHE THR ILE TRP LYS ALA SER HIS SEQRES 17 B 222 MET ASP GLN THR TYR TYR LEU CYS SER ASP VAL ASN PHE SEQRES 18 B 222 VAL HET CU A 301 1 HET GOL A 302 12 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET IOD A 309 1 HET IOD A 310 1 HET IOD A 311 1 HET IOD A 312 1 HET IOD A 313 1 HET IOD A 314 1 HET IOD A 315 1 HET IOD A 316 1 HET IOD A 317 1 HET IOD A 318 1 HET CU B 301 1 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD B 305 1 HET IOD B 306 1 HET IOD B 307 1 HET IOD B 308 1 HET IOD B 309 1 HET IOD B 310 1 HET IOD B 311 1 HET IOD B 312 1 HET IOD B 313 1 HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM IOD IODIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CU 2(CU 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 IOD 28(I 1-) FORMUL 34 HOH *364(H2 O) HELIX 1 AA1 THR A 45 GLY A 55 1 11 HELIX 2 AA2 ASN A 62 ASP A 67 1 6 HELIX 3 AA3 ASP A 67 ASN A 77 1 11 HELIX 4 AA4 PRO A 78 ASN A 83 1 6 HELIX 5 AA5 ASN A 95 LEU A 100 1 6 HELIX 6 AA6 LEU A 110 ARG A 115 1 6 HELIX 7 AA7 TYR A 116 ALA A 121 5 6 HELIX 8 AA8 THR B 45 GLY B 55 1 11 HELIX 9 AA9 ASN B 62 ASP B 67 1 6 HELIX 10 AB1 ASP B 67 ASN B 77 1 11 HELIX 11 AB2 PRO B 78 ASN B 83 1 6 HELIX 12 AB3 TRP B 84 GLY B 86 5 3 HELIX 13 AB4 ASN B 95 LEU B 100 1 6 HELIX 14 AB5 LEU B 110 ARG B 115 1 6 HELIX 15 AB6 TYR B 116 ALA B 121 5 6 SHEET 1 AA1 3 GLY A 38 ASN A 42 0 SHEET 2 AA1 3 THR A 133 ASP A 140 -1 O HIS A 137 N ASN A 42 SHEET 3 AA1 3 ASN A 184 HIS A 190 -1 O VAL A 189 N PHE A 134 SHEET 1 AA2 3 TYR A 88 ASP A 90 0 SHEET 2 AA2 3 GLN A 211 PHE A 221 -1 O THR A 212 N ARG A 89 SHEET 3 AA2 3 THR A 128 VAL A 130 1 N VAL A 130 O ASN A 220 SHEET 1 AA3 5 TYR A 88 ASP A 90 0 SHEET 2 AA3 5 GLN A 211 PHE A 221 -1 O THR A 212 N ARG A 89 SHEET 3 AA3 5 GLY A 196 ALA A 206 -1 N VAL A 200 O SER A 217 SHEET 4 AA3 5 ALA A 146 THR A 154 -1 N TYR A 152 O PHE A 201 SHEET 5 AA3 5 LEU A 170 GLN A 175 -1 O VAL A 173 N VAL A 151 SHEET 1 AA4 3 GLY B 38 ASN B 42 0 SHEET 2 AA4 3 THR B 133 ASP B 140 -1 O HIS B 137 N ASN B 42 SHEET 3 AA4 3 ASN B 184 HIS B 190 -1 O VAL B 189 N PHE B 134 SHEET 1 AA5 3 TYR B 88 ARG B 89 0 SHEET 2 AA5 3 THR B 212 PHE B 221 -1 O THR B 212 N ARG B 89 SHEET 3 AA5 3 THR B 128 VAL B 130 1 N VAL B 130 O ASN B 220 SHEET 1 AA6 5 TYR B 88 ARG B 89 0 SHEET 2 AA6 5 THR B 212 PHE B 221 -1 O THR B 212 N ARG B 89 SHEET 3 AA6 5 GLY B 196 ALA B 206 -1 N GLY B 196 O PHE B 221 SHEET 4 AA6 5 ALA B 146 THR B 154 -1 N TYR B 152 O PHE B 201 SHEET 5 AA6 5 LEU B 170 GLN B 175 -1 O VAL B 173 N VAL B 151 SSBOND 1 CYS A 50 CYS A 70 1555 1555 2.07 SSBOND 2 CYS A 106 CYS A 216 1555 1555 2.10 SSBOND 3 CYS B 50 CYS B 70 1555 1555 2.10 SSBOND 4 CYS B 106 CYS B 216 1555 1555 2.08 LINK N HIS A 37 CU CU A 301 1555 1555 2.07 LINK ND1 HIS A 37 CU CU A 301 1555 1555 2.05 LINK NE2 HIS A 144 CU CU A 301 1555 1555 2.21 LINK N HIS B 37 CU CU B 301 1555 1555 2.31 LINK ND1 HIS B 37 CU CU B 301 1555 1555 2.12 LINK CU CU B 301 O HOH B 550 1555 1555 2.62 CISPEP 1 ASN A 42 PRO A 43 0 -11.81 CISPEP 2 ASN A 42 PRO A 43 0 0.27 CISPEP 3 ASN B 42 PRO B 43 0 -10.99 SITE 1 AC1 3 HIS A 37 HIS A 144 TYR A 213 SITE 1 AC2 6 ARG A 97 LYS A 155 TRP A 167 ASP A 168 SITE 2 AC2 6 LEU A 170 IOD A 314 SITE 1 AC3 3 SER A 178 TYR A 179 PRO A 180 SITE 1 AC4 2 HOH A 446 HOH A 539 SITE 1 AC5 1 ASN A 184 SITE 1 AC6 1 VAL A 122 SITE 1 AC7 1 GLN A 156 SITE 1 AC8 4 ASN A 95 ARG A 97 HOH A 551 TRP B 91 SITE 1 AC9 3 ASN A 77 ASN A 79 ARG A 115 SITE 1 AD1 1 ASN A 193 SITE 1 AD2 3 ARG A 117 HOH A 423 HOH A 564 SITE 1 AD3 1 THR A 127 SITE 1 AD4 5 ARG A 97 LEU A 172 GOL A 302 HOH A 443 SITE 2 AD4 5 HOH A 569 SITE 1 AD5 1 SER A 143 SITE 1 AD6 4 GLN A 175 HOH A 487 HOH A 514 HOH A 516 SITE 1 AD7 1 ASN A 184 SITE 1 AD8 4 ARG A 53 HOH A 555 HOH A 574 HOH A 581 SITE 1 AD9 3 HIS B 37 HIS B 144 HOH B 550 SITE 1 AE1 1 ASN B 184 SITE 1 AE2 2 HIS B 96 ARG B 97 SITE 1 AE3 1 ARG B 53 SITE 1 AE4 3 ASN B 77 ASN B 79 ARG B 115 SITE 1 AE5 2 VAL B 122 HOH B 575 SITE 1 AE6 1 HOH B 547 SITE 1 AE7 2 THR B 133 HOH B 443 CRYST1 77.228 77.228 122.346 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012949 0.007476 0.000000 0.00000 SCALE2 0.000000 0.014952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008174 0.00000