HEADER LIGASE 18-JAN-17 5UJI TITLE CRYSTAL STRUCTURE OF HUMAN T2-TRYPTOPHANYL-TRNA SYNTHETASE WITH H130R TITLE 2 MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN--TRNA LIGASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 56-430; COMPND 5 SYNONYM: INTERFERON-INDUCED PROTEIN 53,IFP53,TRYPTOPHANYL-TRNA COMPND 6 SYNTHETASE,HWRS; COMPND 7 EC: 6.1.1.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WARS, IFI53, WRS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS ROSSMANN-FOLD CATALYTIC DOMAIN, ANTI-CODON BINDING DOMAIN, H130R KEYWDS 2 MUTATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,X.-L.YANG REVDAT 4 04-OCT-23 5UJI 1 REMARK REVDAT 3 08-JAN-20 5UJI 1 REMARK REVDAT 2 29-AUG-18 5UJI 1 JRNL REVDAT 1 17-JAN-18 5UJI 0 JRNL AUTH X.XU,H.ZHOU,Q.ZHOU,F.HONG,M.N.VO,W.NIU,Z.WANG,X.XIONG, JRNL AUTH 2 K.NAKAMURA,K.WAKASUGI,P.SCHIMMEL,X.L.YANG JRNL TITL AN ALTERNATIVE CONFORMATION OF HUMAN TRPRS SUGGESTS A ROLE JRNL TITL 2 OF ZINC IN ACTIVATING NON-ENZYMATIC FUNCTION. JRNL REF RNA BIOL V. 15 649 2018 JRNL REFN ESSN 1555-8584 JRNL PMID 28910573 JRNL DOI 10.1080/15476286.2017.1377868 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 20481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.89000 REMARK 3 B22 (A**2) : 7.00000 REMARK 3 B33 (A**2) : -5.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.400 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.356 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5884 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5614 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7930 ; 1.158 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12924 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 5.908 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;32.654 ;23.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1044 ;16.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;12.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 861 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6563 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1408 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5UJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21588 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 146.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : 0.37100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG4000, 0.1 M NA CITRATE PH5.0, REMARK 280 0.1 M MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.36200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.36200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.44400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.52850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.44400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.52850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.36200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.44400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.52850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.36200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.44400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.52850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 344 REMARK 465 GLY A 345 REMARK 465 ALA A 346 REMARK 465 GLN A 347 REMARK 465 THR A 348 REMARK 465 LYS A 349 REMARK 465 MET A 350 REMARK 465 SER A 351 REMARK 465 ALA A 352 REMARK 465 SER A 353 REMARK 465 ASP A 354 REMARK 465 PRO A 355 REMARK 465 ARG A 388 REMARK 465 GLN A 389 REMARK 465 PHE A 390 REMARK 465 GLY A 391 REMARK 465 GLY A 392 REMARK 465 PHE A 470 REMARK 465 GLN A 471 REMARK 465 LYS A 472 REMARK 465 LEU A 473 REMARK 465 ALA A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 LEU A 477 REMARK 465 GLU A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 GLU B 167 REMARK 465 ASP B 302 REMARK 465 MET B 350 REMARK 465 SER B 351 REMARK 465 ALA B 352 REMARK 465 SER B 353 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 ARG B 381 REMARK 465 ASP B 382 REMARK 465 THR B 383 REMARK 465 ILE B 384 REMARK 465 GLU B 385 REMARK 465 GLU B 386 REMARK 465 HIS B 387 REMARK 465 ARG B 388 REMARK 465 GLN B 389 REMARK 465 PHE B 390 REMARK 465 GLY B 391 REMARK 465 SER B 422 REMARK 465 GLN B 471 REMARK 465 LYS B 472 REMARK 465 LEU B 473 REMARK 465 ALA B 474 REMARK 465 ALA B 475 REMARK 465 ALA B 476 REMARK 465 LEU B 477 REMARK 465 GLU B 478 REMARK 465 HIS B 479 REMARK 465 HIS B 480 REMARK 465 HIS B 481 REMARK 465 HIS B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 393 CG OD1 ND2 REMARK 470 TYR A 420 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 317 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 162 135.52 -175.91 REMARK 500 ASP A 312 -62.32 76.19 REMARK 500 SER A 357 -60.82 67.30 REMARK 500 TYR A 420 -173.08 64.08 REMARK 500 SER A 422 47.63 118.81 REMARK 500 ASP B 99 80.90 66.89 REMARK 500 HIS B 129 34.16 -141.53 REMARK 500 GLN B 313 35.96 -96.11 REMARK 500 SER B 357 56.51 -109.94 REMARK 500 HIS B 375 -52.60 -127.86 REMARK 500 PHE B 377 77.73 63.15 REMARK 500 ASN B 393 101.07 -163.51 REMARK 500 ASP B 395 72.90 59.96 REMARK 500 ALA B 424 -65.35 64.77 REMARK 500 ASP B 469 -60.24 -93.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UJJ RELATED DB: PDB DBREF 5UJI A 97 471 UNP P23381 SYWC_HUMAN 56 430 DBREF 5UJI B 97 471 UNP P23381 SYWC_HUMAN 56 430 SEQADV 5UJI ARG A 130 UNP P23381 HIS 89 ENGINEERED MUTATION SEQADV 5UJI LYS A 472 UNP P23381 EXPRESSION TAG SEQADV 5UJI LEU A 473 UNP P23381 EXPRESSION TAG SEQADV 5UJI ALA A 474 UNP P23381 EXPRESSION TAG SEQADV 5UJI ALA A 475 UNP P23381 EXPRESSION TAG SEQADV 5UJI ALA A 476 UNP P23381 EXPRESSION TAG SEQADV 5UJI LEU A 477 UNP P23381 EXPRESSION TAG SEQADV 5UJI GLU A 478 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS A 479 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS A 480 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS A 481 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS A 482 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS A 483 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS A 484 UNP P23381 EXPRESSION TAG SEQADV 5UJI ARG B 130 UNP P23381 HIS 89 ENGINEERED MUTATION SEQADV 5UJI LYS B 472 UNP P23381 EXPRESSION TAG SEQADV 5UJI LEU B 473 UNP P23381 EXPRESSION TAG SEQADV 5UJI ALA B 474 UNP P23381 EXPRESSION TAG SEQADV 5UJI ALA B 475 UNP P23381 EXPRESSION TAG SEQADV 5UJI ALA B 476 UNP P23381 EXPRESSION TAG SEQADV 5UJI LEU B 477 UNP P23381 EXPRESSION TAG SEQADV 5UJI GLU B 478 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS B 479 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS B 480 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS B 481 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS B 482 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS B 483 UNP P23381 EXPRESSION TAG SEQADV 5UJI HIS B 484 UNP P23381 EXPRESSION TAG SEQRES 1 A 388 GLY ILE ASP TYR ASP LYS LEU ILE VAL ARG PHE GLY SER SEQRES 2 A 388 SER LYS ILE ASP LYS GLU LEU ILE ASN ARG ILE GLU ARG SEQRES 3 A 388 ALA THR GLY GLN ARG PRO HIS ARG PHE LEU ARG ARG GLY SEQRES 4 A 388 ILE PHE PHE SER HIS ARG ASP MET ASN GLN VAL LEU ASP SEQRES 5 A 388 ALA TYR GLU ASN LYS LYS PRO PHE TYR LEU TYR THR GLY SEQRES 6 A 388 ARG GLY PRO SER SER GLU ALA MET HIS VAL GLY HIS LEU SEQRES 7 A 388 ILE PRO PHE ILE PHE THR LYS TRP LEU GLN ASP VAL PHE SEQRES 8 A 388 ASN VAL PRO LEU VAL ILE GLN MET THR ASP ASP GLU LYS SEQRES 9 A 388 TYR LEU TRP LYS ASP LEU THR LEU ASP GLN ALA TYR SER SEQRES 10 A 388 TYR ALA VAL GLU ASN ALA LYS ASP ILE ILE ALA CYS GLY SEQRES 11 A 388 PHE ASP ILE ASN LYS THR PHE ILE PHE SER ASP LEU ASP SEQRES 12 A 388 TYR MET GLY MET SER SER GLY PHE TYR LYS ASN VAL VAL SEQRES 13 A 388 LYS ILE GLN LYS HIS VAL THR PHE ASN GLN VAL LYS GLY SEQRES 14 A 388 ILE PHE GLY PHE THR ASP SER ASP CYS ILE GLY LYS ILE SEQRES 15 A 388 SER PHE PRO ALA ILE GLN ALA ALA PRO SER PHE SER ASN SEQRES 16 A 388 SER PHE PRO GLN ILE PHE ARG ASP ARG THR ASP ILE GLN SEQRES 17 A 388 CYS LEU ILE PRO CYS ALA ILE ASP GLN ASP PRO TYR PHE SEQRES 18 A 388 ARG MET THR ARG ASP VAL ALA PRO ARG ILE GLY TYR PRO SEQRES 19 A 388 LYS PRO ALA LEU LEU HIS SER THR PHE PHE PRO ALA LEU SEQRES 20 A 388 GLN GLY ALA GLN THR LYS MET SER ALA SER ASP PRO ASN SEQRES 21 A 388 SER SER ILE PHE LEU THR ASP THR ALA LYS GLN ILE LYS SEQRES 22 A 388 THR LYS VAL ASN LYS HIS ALA PHE SER GLY GLY ARG ASP SEQRES 23 A 388 THR ILE GLU GLU HIS ARG GLN PHE GLY GLY ASN CYS ASP SEQRES 24 A 388 VAL ASP VAL SER PHE MET TYR LEU THR PHE PHE LEU GLU SEQRES 25 A 388 ASP ASP ASP LYS LEU GLU GLN ILE ARG LYS ASP TYR THR SEQRES 26 A 388 SER GLY ALA MET LEU THR GLY GLU LEU LYS LYS ALA LEU SEQRES 27 A 388 ILE GLU VAL LEU GLN PRO LEU ILE ALA GLU HIS GLN ALA SEQRES 28 A 388 ARG ARG LYS GLU VAL THR ASP GLU ILE VAL LYS GLU PHE SEQRES 29 A 388 MET THR PRO ARG LYS LEU SER PHE ASP PHE GLN LYS LEU SEQRES 30 A 388 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 388 GLY ILE ASP TYR ASP LYS LEU ILE VAL ARG PHE GLY SER SEQRES 2 B 388 SER LYS ILE ASP LYS GLU LEU ILE ASN ARG ILE GLU ARG SEQRES 3 B 388 ALA THR GLY GLN ARG PRO HIS ARG PHE LEU ARG ARG GLY SEQRES 4 B 388 ILE PHE PHE SER HIS ARG ASP MET ASN GLN VAL LEU ASP SEQRES 5 B 388 ALA TYR GLU ASN LYS LYS PRO PHE TYR LEU TYR THR GLY SEQRES 6 B 388 ARG GLY PRO SER SER GLU ALA MET HIS VAL GLY HIS LEU SEQRES 7 B 388 ILE PRO PHE ILE PHE THR LYS TRP LEU GLN ASP VAL PHE SEQRES 8 B 388 ASN VAL PRO LEU VAL ILE GLN MET THR ASP ASP GLU LYS SEQRES 9 B 388 TYR LEU TRP LYS ASP LEU THR LEU ASP GLN ALA TYR SER SEQRES 10 B 388 TYR ALA VAL GLU ASN ALA LYS ASP ILE ILE ALA CYS GLY SEQRES 11 B 388 PHE ASP ILE ASN LYS THR PHE ILE PHE SER ASP LEU ASP SEQRES 12 B 388 TYR MET GLY MET SER SER GLY PHE TYR LYS ASN VAL VAL SEQRES 13 B 388 LYS ILE GLN LYS HIS VAL THR PHE ASN GLN VAL LYS GLY SEQRES 14 B 388 ILE PHE GLY PHE THR ASP SER ASP CYS ILE GLY LYS ILE SEQRES 15 B 388 SER PHE PRO ALA ILE GLN ALA ALA PRO SER PHE SER ASN SEQRES 16 B 388 SER PHE PRO GLN ILE PHE ARG ASP ARG THR ASP ILE GLN SEQRES 17 B 388 CYS LEU ILE PRO CYS ALA ILE ASP GLN ASP PRO TYR PHE SEQRES 18 B 388 ARG MET THR ARG ASP VAL ALA PRO ARG ILE GLY TYR PRO SEQRES 19 B 388 LYS PRO ALA LEU LEU HIS SER THR PHE PHE PRO ALA LEU SEQRES 20 B 388 GLN GLY ALA GLN THR LYS MET SER ALA SER ASP PRO ASN SEQRES 21 B 388 SER SER ILE PHE LEU THR ASP THR ALA LYS GLN ILE LYS SEQRES 22 B 388 THR LYS VAL ASN LYS HIS ALA PHE SER GLY GLY ARG ASP SEQRES 23 B 388 THR ILE GLU GLU HIS ARG GLN PHE GLY GLY ASN CYS ASP SEQRES 24 B 388 VAL ASP VAL SER PHE MET TYR LEU THR PHE PHE LEU GLU SEQRES 25 B 388 ASP ASP ASP LYS LEU GLU GLN ILE ARG LYS ASP TYR THR SEQRES 26 B 388 SER GLY ALA MET LEU THR GLY GLU LEU LYS LYS ALA LEU SEQRES 27 B 388 ILE GLU VAL LEU GLN PRO LEU ILE ALA GLU HIS GLN ALA SEQRES 28 B 388 ARG ARG LYS GLU VAL THR ASP GLU ILE VAL LYS GLU PHE SEQRES 29 B 388 MET THR PRO ARG LYS LEU SER PHE ASP PHE GLN LYS LEU SEQRES 30 B 388 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASP A 99 SER A 109 1 11 HELIX 2 AA2 ASP A 113 GLY A 125 1 13 HELIX 3 AA3 SER A 139 ASN A 152 1 14 HELIX 4 AA4 HIS A 170 HIS A 173 5 4 HELIX 5 AA5 LEU A 174 ASN A 188 1 15 HELIX 6 AA6 THR A 196 LYS A 204 1 9 HELIX 7 AA7 THR A 207 ALA A 224 1 18 HELIX 8 AA8 ASP A 237 MET A 241 1 5 HELIX 9 AA9 GLY A 246 HIS A 257 1 12 HELIX 10 AB1 THR A 259 GLY A 268 1 10 HELIX 11 AB2 CYS A 274 SER A 279 1 6 HELIX 12 AB3 SER A 279 ALA A 286 1 8 HELIX 13 AB4 PRO A 287 SER A 292 5 6 HELIX 14 AB5 PHE A 293 ARG A 298 1 6 HELIX 15 AB6 ASP A 314 ALA A 324 1 11 HELIX 16 AB7 PRO A 325 GLY A 328 5 4 HELIX 17 AB8 THR A 364 ALA A 376 1 13 HELIX 18 AB9 ASP A 397 LEU A 407 1 11 HELIX 19 AC1 ASP A 411 ASP A 419 1 9 HELIX 20 AC2 MET A 425 GLU A 451 1 27 HELIX 21 AC3 THR A 453 MET A 461 1 9 HELIX 22 AC4 ASP B 99 SER B 110 1 12 HELIX 23 AC5 ASP B 113 THR B 124 1 12 HELIX 24 AC6 SER B 139 ASN B 152 1 14 HELIX 25 AC7 HIS B 170 ASN B 188 1 19 HELIX 26 AC8 THR B 196 LYS B 204 1 9 HELIX 27 AC9 THR B 207 ALA B 224 1 18 HELIX 28 AD1 ASP B 228 ASN B 230 5 3 HELIX 29 AD2 ASP B 237 MET B 241 1 5 HELIX 30 AD3 GLY B 242 SER B 244 5 3 HELIX 31 AD4 GLY B 246 HIS B 257 1 12 HELIX 32 AD5 THR B 259 GLY B 268 1 10 HELIX 33 AD6 CYS B 274 PHE B 280 1 7 HELIX 34 AD7 PHE B 280 ALA B 286 1 7 HELIX 35 AD8 PRO B 287 SER B 292 5 6 HELIX 36 AD9 PHE B 293 ARG B 298 1 6 HELIX 37 AE1 ASP B 314 ILE B 327 1 14 HELIX 38 AE2 THR B 338 THR B 348 1 11 HELIX 39 AE3 THR B 364 ALA B 376 1 13 HELIX 40 AE4 ASP B 397 LEU B 407 1 11 HELIX 41 AE5 ASP B 411 TYR B 420 1 10 HELIX 42 AE6 ALA B 424 GLU B 451 1 28 HELIX 43 AE7 THR B 453 THR B 462 1 10 SHEET 1 AA1 5 THR A 232 SER A 236 0 SHEET 2 AA1 5 LEU A 191 MET A 195 1 N MET A 195 O PHE A 235 SHEET 3 AA1 5 PHE A 156 ARG A 162 1 N LEU A 158 O VAL A 192 SHEET 4 AA1 5 GLN A 304 CYS A 309 1 O LEU A 306 N TYR A 157 SHEET 5 AA1 5 ALA A 333 HIS A 336 1 O ALA A 333 N CYS A 305 SHEET 1 AA2 5 THR B 232 SER B 236 0 SHEET 2 AA2 5 LEU B 191 MET B 195 1 N MET B 195 O PHE B 235 SHEET 3 AA2 5 PHE B 156 ARG B 162 1 N LEU B 158 O VAL B 192 SHEET 4 AA2 5 GLN B 304 ILE B 307 1 O LEU B 306 N TYR B 157 SHEET 5 AA2 5 ALA B 333 LEU B 334 1 O ALA B 333 N CYS B 305 CRYST1 84.888 139.057 146.724 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006816 0.00000