HEADER CELL ADHESION 25-JAN-17 5ULU TITLE CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC19-21 (S2087P) WITH NON- TITLE 2 SYNDROMIC DEAFNESS (DFNB12) ASSOCIATED MUTATION D2148N COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1955-2289; COMPND 5 SYNONYM: OTOCADHERIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A+ KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.JAIGANESH,M.SOTOMAYOR REVDAT 6 04-OCT-23 5ULU 1 REMARK LINK REVDAT 5 18-DEC-19 5ULU 1 REMARK REVDAT 4 19-SEP-18 5ULU 1 JRNL REVDAT 3 05-SEP-18 5ULU 1 SOURCE REVDAT 2 01-AUG-18 5ULU 1 JRNL REVDAT 1 31-JAN-18 5ULU 0 JRNL AUTH A.JAIGANESH,P.DE-LA-TORRE,A.A.PATEL,D.J.TERMINE, JRNL AUTH 2 F.VELEZ-CORTES,C.CHEN,M.SOTOMAYOR JRNL TITL ZOOMING IN ON CADHERIN-23: STRUCTURAL DIVERSITY AND JRNL TITL 2 POTENTIAL MECHANISMS OF INHERITED DEAFNESS. JRNL REF STRUCTURE V. 26 1210 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30033219 JRNL DOI 10.1016/J.STR.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 13292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2443 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.47000 REMARK 3 B22 (A**2) : 8.66000 REMARK 3 B33 (A**2) : -13.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.484 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2488 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2311 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3412 ; 1.456 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5371 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 7.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;39.778 ;25.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;16.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.654 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2750 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 2.619 ; 7.132 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1277 ; 2.620 ; 7.131 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1594 ; 4.130 ;10.701 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1595 ; 4.128 ;10.702 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1210 ; 2.390 ; 7.333 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1208 ; 2.387 ; 7.330 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1818 ; 3.981 ;10.917 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2553 ; 6.047 ;85.024 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2553 ; 6.046 ;85.042 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1934 A 2040 REMARK 3 RESIDUE RANGE : A 2301 A 2302 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9040 21.8820 -34.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.2976 REMARK 3 T33: 0.3073 T12: 0.2161 REMARK 3 T13: 0.0468 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.5260 L22: 2.7530 REMARK 3 L33: 11.7241 L12: 0.7163 REMARK 3 L13: 2.1087 L23: -1.2774 REMARK 3 S TENSOR REMARK 3 S11: 0.1526 S12: 0.5191 S13: 0.1770 REMARK 3 S21: -0.4907 S22: -0.0408 S23: -0.1739 REMARK 3 S31: -0.3753 S32: 0.1246 S33: -0.1118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2041 A 2145 REMARK 3 RESIDUE RANGE : A 2303 A 2305 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8780 6.3410 8.0410 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.2989 REMARK 3 T33: 0.2276 T12: -0.1426 REMARK 3 T13: -0.1132 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.6598 L22: 1.1126 REMARK 3 L33: 12.3919 L12: 0.5085 REMARK 3 L13: -4.1867 L23: -2.4208 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.3932 S13: -0.2050 REMARK 3 S21: 0.0061 S22: -0.1216 S23: 0.0557 REMARK 3 S31: 0.5461 S32: -1.1264 S33: 0.0776 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2146 A 2262 REMARK 3 RESIDUE RANGE : A 2306 A 2306 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7440 -6.1560 55.5420 REMARK 3 T TENSOR REMARK 3 T11: 0.5065 T22: 0.1869 REMARK 3 T33: 0.2610 T12: -0.1874 REMARK 3 T13: 0.0446 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 3.3225 L22: 0.9594 REMARK 3 L33: 10.1980 L12: -0.5802 REMARK 3 L13: 0.4687 L23: -2.2218 REMARK 3 S TENSOR REMARK 3 S11: -0.3734 S12: -0.3465 S13: -0.2693 REMARK 3 S21: 0.1046 S22: 0.1390 S23: -0.0106 REMARK 3 S31: 1.2833 S32: -0.9180 S33: 0.2344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ULU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.375 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5I8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5 0.05M MGCL2 25% MPD, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.11900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.69300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.11900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.69300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1931 REMARK 465 ASN A 1932 REMARK 465 HIS A 1933 REMARK 465 ASP A 1966 REMARK 465 ALA A 1967 REMARK 465 ASP A 1968 REMARK 465 GLU A 1969 REMARK 465 ASP A 1970 REMARK 465 VAL A 1971 REMARK 465 TYR A 1972 REMARK 465 ALA A 1973 REMARK 465 VAL A 1974 REMARK 465 VAL A 2263 REMARK 465 ASN A 2264 REMARK 465 ASP A 2265 REMARK 465 ASN A 2266 REMARK 465 LEU A 2267 REMARK 465 GLU A 2268 REMARK 465 HIS A 2269 REMARK 465 HIS A 2270 REMARK 465 HIS A 2271 REMARK 465 HIS A 2272 REMARK 465 HIS A 2273 REMARK 465 HIS A 2274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1948 -5.34 74.58 REMARK 500 HIS A1983 43.41 -91.66 REMARK 500 PRO A2012 42.91 -84.12 REMARK 500 GLN A2025 -9.80 91.33 REMARK 500 ASP A2091 15.45 58.84 REMARK 500 ASN A2106 58.04 -99.19 REMARK 500 ILE A2189 -30.50 -135.14 REMARK 500 THR A2197 58.23 -119.03 REMARK 500 ASP A2198 -12.22 70.65 REMARK 500 ASP A2203 77.20 68.79 REMARK 500 GLN A2204 32.67 -141.84 REMARK 500 LYS A2220 -56.07 -121.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 2190 ILE A 2191 144.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1947 OE2 REMARK 620 2 ASP A2005 OD1 85.7 REMARK 620 3 GLU A2007 OE2 78.6 82.7 REMARK 620 4 ASP A2041 OD1 92.9 154.9 72.5 REMARK 620 5 ASP A2041 OD2 74.1 153.6 109.0 45.7 REMARK 620 6 HOH A2403 O 68.5 81.3 144.3 121.4 75.7 REMARK 620 7 HOH A2404 O 158.8 115.5 103.3 68.2 85.5 112.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1947 OE1 REMARK 620 2 GLU A2007 OE1 104.5 REMARK 620 3 GLU A2007 OE2 80.5 51.6 REMARK 620 4 ASP A2038 OD1 88.2 78.7 123.1 REMARK 620 5 ASP A2039 O 93.8 147.9 159.8 75.7 REMARK 620 6 ASP A2041 OD1 94.4 120.0 77.4 159.5 83.8 REMARK 620 7 ASP A2074 OD1 169.8 85.5 104.7 95.9 78.3 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2040 OD1 REMARK 620 2 ASN A2042 O 105.9 REMARK 620 3 ASP A2072 OD1 146.9 96.4 REMARK 620 4 ASP A2072 OD2 149.4 88.5 52.5 REMARK 620 5 ASP A2074 OD2 79.2 90.9 76.4 128.4 REMARK 620 6 ASN A2078 O 82.5 170.0 78.4 81.5 96.2 REMARK 620 7 ASN A2125 OD1 79.9 101.2 119.7 70.7 158.1 74.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2057 OE2 REMARK 620 2 ASP A2110 OD1 79.4 REMARK 620 3 GLU A2112 OE2 79.6 80.6 REMARK 620 4 ASP A2146 OD1 92.8 157.0 76.7 REMARK 620 5 ASP A2146 OD2 73.6 140.6 120.9 53.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2057 OE1 REMARK 620 2 GLU A2112 OE1 118.1 REMARK 620 3 GLU A2112 OE2 85.4 51.1 REMARK 620 4 ASP A2143 OD1 86.6 84.4 122.2 REMARK 620 5 ILE A2144 O 78.2 159.0 148.8 83.5 REMARK 620 6 ASP A2146 OD1 86.8 109.4 69.2 166.3 83.3 REMARK 620 7 ASP A2179 OD1 162.0 77.2 99.0 105.2 89.6 78.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2145 OD1 REMARK 620 2 SER A2147 O 125.7 REMARK 620 3 ASP A2177 OD1 143.1 66.5 REMARK 620 4 ASP A2177 OD2 106.7 115.5 49.1 REMARK 620 5 ASP A2179 OD2 65.3 89.8 81.3 79.5 REMARK 620 6 ASP A2239 OD2 78.4 143.8 112.4 74.5 126.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ULY RELATED DB: PDB DBREF 5ULU A 1932 2266 UNP Q99PF4 CAD23_MOUSE 1955 2289 SEQADV 5ULU MET A 1931 UNP Q99PF4 INITIATING METHIONINE SEQADV 5ULU PRO A 2064 UNP Q99PF4 SER 2087 ENGINEERED MUTATION SEQADV 5ULU ASN A 2125 UNP Q99PF4 ASP 2148 ENGINEERED MUTATION SEQADV 5ULU LEU A 2267 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU GLU A 2268 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU HIS A 2269 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU HIS A 2270 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU HIS A 2271 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU HIS A 2272 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU HIS A 2273 UNP Q99PF4 EXPRESSION TAG SEQADV 5ULU HIS A 2274 UNP Q99PF4 EXPRESSION TAG SEQRES 1 A 344 MET ASN HIS PRO LEU PHE THR GLU GLY THR TYR GLN ALA SEQRES 2 A 344 GLU VAL MET GLU ASN SER PRO ALA GLY THR PRO LEU THR SEQRES 3 A 344 VAL LEU ASN GLY PRO ILE LEU ALA LEU ASP ALA ASP GLU SEQRES 4 A 344 ASP VAL TYR ALA VAL VAL THR TYR GLN LEU LEU GLY THR SEQRES 5 A 344 HIS SER ASP LEU PHE VAL ILE ASP ASN SER THR GLY VAL SEQRES 6 A 344 VAL THR VAL ARG SER GLY ILE ILE ILE ASP ARG GLU ALA SEQRES 7 A 344 PHE SER PRO PRO PHE LEU GLU LEU LEU LEU LEU ALA GLU SEQRES 8 A 344 ASP ILE GLY GLN LEU ASN GLY THR ALA HIS LEU PHE ILE SEQRES 9 A 344 THR ILE LEU ASP ASP ASN ASP ASN TRP PRO THR PHE SER SEQRES 10 A 344 PRO PRO THR TYR THR VAL HIS LEU LEU GLU ASN CYS PRO SEQRES 11 A 344 PRO GLY PHE PRO VAL LEU GLN VAL THR ALA THR ASP GLU SEQRES 12 A 344 ASP SER GLY LEU ASN GLY GLU LEU VAL TYR ARG ILE GLU SEQRES 13 A 344 ALA GLY ALA GLN ASP ARG PHE LEU ILE HIS PRO VAL THR SEQRES 14 A 344 GLY VAL ILE ARG VAL GLY ASN ALA THR ILE ASP ARG GLU SEQRES 15 A 344 GLU GLN GLU SER TYR ARG LEU THR VAL VAL ALA THR ASN SEQRES 16 A 344 ARG GLY THR VAL PRO LEU SER GLY THR ALA ILE VAL THR SEQRES 17 A 344 ILE LEU ILE ASP ASP ILE ASN ASP SER ARG PRO GLU PHE SEQRES 18 A 344 LEU ASN PRO ILE GLN THR VAL SER VAL LEU GLU SER ALA SEQRES 19 A 344 GLU PRO GLY THR ILE ILE ALA ASN VAL THR ALA ILE ASP SEQRES 20 A 344 LEU ASP LEU ASN PRO LYS LEU GLU TYR HIS ILE ILE SER SEQRES 21 A 344 ILE VAL ALA LYS ASP ASP THR ASP ARG LEU VAL PRO ASP SEQRES 22 A 344 GLN GLU ASP ALA PHE ALA VAL ASN ILE ASN THR GLY SER SEQRES 23 A 344 VAL MET VAL LYS SER PRO LEU ASN ARG GLU LEU VAL ALA SEQRES 24 A 344 THR TYR GLU VAL THR LEU SER VAL ILE ASP ASN ALA SER SEQRES 25 A 344 ASP LEU PRO GLU HIS SER VAL SER VAL PRO ASN ALA LYS SEQRES 26 A 344 LEU THR VAL ASN ILE LEU ASP VAL ASN ASP ASN LEU GLU SEQRES 27 A 344 HIS HIS HIS HIS HIS HIS HET CA A2301 1 HET CA A2302 1 HET CA A2303 1 HET CA A2304 1 HET CA A2305 1 HET CA A2306 1 HETNAM CA CALCIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 8 HOH *7(H2 O) HELIX 1 AA1 GLY A 1981 ASP A 1985 5 5 HELIX 2 AA2 ASP A 2005 PHE A 2009 5 5 HELIX 3 AA3 SER A 2075 GLU A 2080 5 6 HELIX 4 AA4 LEU A 2244 SER A 2248 5 5 SHEET 1 AA1 5 THR A1956 VAL A1957 0 SHEET 2 AA1 5 THR A1940 MET A1946 -1 N GLU A1944 O THR A1956 SHEET 3 AA1 5 ASN A2027 LEU A2037 1 O HIS A2031 N TYR A1941 SHEET 4 AA1 5 PHE A2013 GLU A2021 -1 N LEU A2018 O ALA A2030 SHEET 5 AA1 5 GLN A1978 LEU A1980 -1 N LEU A1980 O LEU A2017 SHEET 1 AA2 2 PHE A1987 ILE A1989 0 SHEET 2 AA2 2 VAL A1996 VAL A1998 -1 O THR A1997 N VAL A1988 SHEET 1 AA3 4 THR A2050 LEU A2056 0 SHEET 2 AA3 4 SER A2132 ASP A2142 1 O ILE A2136 N TYR A2051 SHEET 3 AA3 4 SER A2116 THR A2124 -1 N LEU A2119 O VAL A2137 SHEET 4 AA3 4 VAL A2082 ALA A2087 -1 N ALA A2087 O THR A2120 SHEET 1 AA4 3 PRO A2064 GLN A2067 0 SHEET 2 AA4 3 VAL A2101 VAL A2104 -1 O ILE A2102 N LEU A2066 SHEET 3 AA4 3 PHE A2093 ILE A2095 -1 N LEU A2094 O ARG A2103 SHEET 1 AA5 2 GLU A2150 PHE A2151 0 SHEET 2 AA5 2 ALA A2175 ILE A2176 -1 O ILE A2176 N GLU A2150 SHEET 1 AA6 4 ILE A2155 LEU A2161 0 SHEET 2 AA6 4 ALA A2254 LEU A2261 1 O ASN A2259 N VAL A2160 SHEET 3 AA6 4 THR A2230 ASP A2239 -1 N LEU A2235 O ALA A2254 SHEET 4 AA6 4 LEU A2184 LYS A2194 -1 N ILE A2189 O THR A2234 SHEET 1 AA7 3 ILE A2169 ASN A2172 0 SHEET 2 AA7 3 SER A2216 VAL A2219 -1 O VAL A2217 N ALA A2171 SHEET 3 AA7 3 PHE A2208 VAL A2210 -1 N ALA A2209 O MET A2218 LINK OE2 GLU A1947 CA CA A2301 1555 1555 2.46 LINK OE1 GLU A1947 CA CA A2302 1555 1555 2.12 LINK OD1 ASP A2005 CA CA A2301 1555 1555 2.63 LINK OE2 GLU A2007 CA CA A2301 1555 1555 2.29 LINK OE1 GLU A2007 CA CA A2302 1555 1555 2.61 LINK OE2 GLU A2007 CA CA A2302 1555 1555 2.42 LINK OD1 ASP A2038 CA CA A2302 1555 1555 2.32 LINK O ASP A2039 CA CA A2302 1555 1555 2.30 LINK OD1 ASN A2040 CA CA A2303 1555 1555 2.14 LINK OD1 ASP A2041 CA CA A2301 1555 1555 2.95 LINK OD2 ASP A2041 CA CA A2301 1555 1555 2.67 LINK OD1 ASP A2041 CA CA A2302 1555 1555 2.59 LINK O ASN A2042 CA CA A2303 1555 1555 2.21 LINK OE2 GLU A2057 CA CA A2304 1555 1555 2.52 LINK OE1 GLU A2057 CA CA A2305 1555 1555 2.25 LINK OD1 ASP A2072 CA CA A2303 1555 1555 2.43 LINK OD2 ASP A2072 CA CA A2303 1555 1555 2.44 LINK OD1 ASP A2074 CA CA A2302 1555 1555 2.33 LINK OD2 ASP A2074 CA CA A2303 1555 1555 2.24 LINK O ASN A2078 CA CA A2303 1555 1555 2.52 LINK OD1 ASP A2110 CA CA A2304 1555 1555 1.98 LINK OE2 GLU A2112 CA CA A2304 1555 1555 2.37 LINK OE1 GLU A2112 CA CA A2305 1555 1555 2.04 LINK OE2 GLU A2112 CA CA A2305 1555 1555 2.73 LINK OD1 ASN A2125 CA CA A2303 1555 1555 2.53 LINK OD1 ASP A2143 CA CA A2305 1555 1555 2.40 LINK O ILE A2144 CA CA A2305 1555 1555 2.14 LINK OD1 ASN A2145 CA CA A2306 1555 1555 2.17 LINK OD1 ASP A2146 CA CA A2304 1555 1555 2.52 LINK OD2 ASP A2146 CA CA A2304 1555 1555 2.24 LINK OD1 ASP A2146 CA CA A2305 1555 1555 2.61 LINK O SER A2147 CA CA A2306 1555 1555 2.42 LINK OD1 ASP A2177 CA CA A2306 1555 1555 2.81 LINK OD2 ASP A2177 CA CA A2306 1555 1555 2.20 LINK OD1 ASP A2179 CA CA A2305 1555 1555 2.29 LINK OD2 ASP A2179 CA CA A2306 1555 1555 2.57 LINK OD2 ASP A2239 CA CA A2306 1555 1555 2.19 LINK CA CA A2301 O HOH A2403 1555 1555 2.10 LINK CA CA A2301 O HOH A2404 1555 1555 2.43 CISPEP 1 GLY A 1960 PRO A 1961 0 0.32 CISPEP 2 SER A 2010 PRO A 2011 0 7.05 CISPEP 3 SER A 2047 PRO A 2048 0 1.36 CISPEP 4 VAL A 2251 PRO A 2252 0 5.19 SITE 1 AC1 6 GLU A1947 ASP A2005 GLU A2007 ASP A2041 SITE 2 AC1 6 HOH A2403 HOH A2404 SITE 1 AC2 6 GLU A1947 GLU A2007 ASP A2038 ASP A2039 SITE 2 AC2 6 ASP A2041 ASP A2074 SITE 1 AC3 6 ASN A2040 ASN A2042 ASP A2072 ASP A2074 SITE 2 AC3 6 ASN A2078 ASN A2125 SITE 1 AC4 4 GLU A2057 ASP A2110 GLU A2112 ASP A2146 SITE 1 AC5 6 GLU A2057 GLU A2112 ASP A2143 ILE A2144 SITE 2 AC5 6 ASP A2146 ASP A2179 SITE 1 AC6 5 ASN A2145 SER A2147 ASP A2177 ASP A2179 SITE 2 AC6 5 ASP A2239 CRYST1 84.238 65.386 114.651 90.00 98.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011871 0.000000 0.001800 0.00000 SCALE2 0.000000 0.015294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008822 0.00000