HEADER OXIDOREDUCTASE 27-JAN-17 5UMH TITLE CRYSTAL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE PROTEIN FROM TITLE 2 BURKHOLDERIA MULTIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BUMUA.00117.A.B1; COMPND 5 EC: 1.13.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS (STRAIN ATCC 17616 / SOURCE 3 249); SOURCE 4 ORGANISM_TAXID: 395019; SOURCE 5 STRAIN: ATCC 17616 / 249; SOURCE 6 GENE: CATA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BUMUA.00117.A.B1 KEYWDS DIOXYGENASE, AROMATIC HYDROCARBON DEGRADATION, ALPHA/BETA FOLD, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5UMH 1 LINK REVDAT 1 15-FEB-17 5UMH 0 JRNL AUTH S.L.DELKER,J.ABENDROTH,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE PROTEIN, FROM JRNL TITL 2 BURKHOLDERIA MULTIVORANS ATCC 17616 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2621 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 157467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.280 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1567 - 3.2525 0.99 11309 145 0.1316 0.1506 REMARK 3 2 3.2525 - 2.5820 1.00 11238 125 0.1315 0.1704 REMARK 3 3 2.5820 - 2.2557 0.99 11067 171 0.1259 0.1589 REMARK 3 4 2.2557 - 2.0495 0.99 11059 155 0.1187 0.1647 REMARK 3 5 2.0495 - 1.9026 0.99 11079 140 0.1218 0.1574 REMARK 3 6 1.9026 - 1.7905 0.99 11011 155 0.1223 0.1774 REMARK 3 7 1.7905 - 1.7008 0.99 11060 146 0.1162 0.1660 REMARK 3 8 1.7008 - 1.6268 0.99 11041 166 0.1172 0.1524 REMARK 3 9 1.6268 - 1.5641 1.00 11123 160 0.1169 0.1513 REMARK 3 10 1.5641 - 1.5102 1.00 11056 159 0.1244 0.1544 REMARK 3 11 1.5102 - 1.4630 1.00 11138 120 0.1363 0.1629 REMARK 3 12 1.4630 - 1.4211 1.00 11117 114 0.1576 0.1785 REMARK 3 13 1.4211 - 1.3837 1.00 11059 130 0.1757 0.1987 REMARK 3 14 1.3837 - 1.3500 1.00 11088 136 0.2027 0.2809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5219 REMARK 3 ANGLE : 0.932 7110 REMARK 3 CHIRALITY : 0.090 770 REMARK 3 PLANARITY : 0.007 955 REMARK 3 DIHEDRAL : 17.885 2006 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 31.148 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.713 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.67 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 1DMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 A12: 0.2 M CALCIUM CHLORIDE 0.1 REMARK 280 M TRIS:HCL, PH 8.5 25 % (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.61000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.61000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 310 REMARK 465 ALA A 311 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 526 O HOH B 605 2.03 REMARK 500 O HOH B 578 O HOH B 959 2.03 REMARK 500 OD1 ASP A 98 O HOH A 501 2.10 REMARK 500 O HOH A 849 O HOH A 877 2.14 REMARK 500 OD1 ASP B 7 O HOH B 502 2.14 REMARK 500 O HOH B 643 O HOH B 980 2.14 REMARK 500 O TRP B 250 O HOH B 503 2.16 REMARK 500 O HOH A 625 O HOH A 884 2.17 REMARK 500 OD2 ASP A 232 O HOH A 502 2.17 REMARK 500 O HOH A 501 O HOH A 945 2.17 REMARK 500 OE1 GLN B 32 O HOH B 504 2.18 REMARK 500 O HOH A 1082 O HOH A 1084 2.18 REMARK 500 O HOH B 635 O HOH B 959 2.18 REMARK 500 O HOH B 549 O HOH B 786 2.18 REMARK 500 NZ LYS A 282 O HOH A 503 2.18 REMARK 500 OE1 GLU B 10 O HOH B 505 2.18 REMARK 500 O1 EDO A 409 O HOH A 504 2.19 REMARK 500 O HOH B 959 O HOH B 1014 2.19 REMARK 500 O HOH B 1038 O HOH B 1040 2.19 REMARK 500 NZ LYS B 236 O HOH B 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 526 O HOH B 809 4546 1.91 REMARK 500 OD2 ASP A 267 O HOH A 945 4455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 166 -4.00 78.04 REMARK 500 CYS A 202 150.62 -46.55 REMARK 500 HIS B 166 -4.29 76.88 REMARK 500 CYS B 202 151.30 -49.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1078 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 8.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 164 OH REMARK 620 2 TYR A 200 OH 95.9 REMARK 620 3 HIS A 224 NE2 94.9 88.5 REMARK 620 4 HIS A 226 NE2 104.4 158.7 96.1 REMARK 620 5 EDO A 402 O2 167.8 73.0 80.3 87.4 REMARK 620 6 EDO A 402 O1 112.4 61.8 140.6 103.5 67.0 REMARK 620 7 HOH A 507 O 150.0 58.4 99.3 100.3 24.3 44.0 REMARK 620 8 HOH A 797 O 104.5 82.0 159.1 86.6 79.2 21.7 59.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 603 O REMARK 620 2 HOH A 727 O 105.7 REMARK 620 3 HOH A 763 O 80.8 72.1 REMARK 620 4 HOH A 954 O 92.6 141.4 77.9 REMARK 620 5 HOH A1008 O 167.2 79.2 89.6 76.9 REMARK 620 6 HOH A1074 O 84.8 82.6 146.1 133.6 107.8 REMARK 620 7 HOH A1076 O 88.6 137.8 150.1 74.8 95.6 58.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 164 OH REMARK 620 2 TYR B 200 OH 97.3 REMARK 620 3 HIS B 224 NE2 95.4 89.0 REMARK 620 4 HIS B 226 NE2 101.8 159.6 96.0 REMARK 620 5 EDO B 402 O2 170.9 74.1 81.6 87.0 REMARK 620 6 EDO B 402 O1 103.6 85.4 160.7 83.4 79.1 REMARK 620 7 HOH B 501 O 170.8 76.4 91.3 83.7 9.9 69.5 REMARK 620 8 HOH B 511 O 118.7 62.4 136.7 101.7 60.4 27.3 52.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUMUA.00117.A RELATED DB: TARGETTRACK DBREF1 5UMH A 1 311 UNP A0A0H3KXJ8_BURM1 DBREF2 5UMH A A0A0H3KXJ8 1 311 DBREF1 5UMH B 1 311 UNP A0A0H3KXJ8_BURM1 DBREF2 5UMH B A0A0H3KXJ8 1 311 SEQADV 5UMH MET A -7 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH ALA A -6 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS A -5 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS A -4 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS A -3 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS A -2 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS A -1 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS A 0 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH MET B -7 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH ALA B -6 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS B -5 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS B -4 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS B -3 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS B -2 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS B -1 UNP A0A0H3KXJ EXPRESSION TAG SEQADV 5UMH HIS B 0 UNP A0A0H3KXJ EXPRESSION TAG SEQRES 1 A 319 MET ALA HIS HIS HIS HIS HIS HIS MET SER VAL LYS VAL SEQRES 2 A 319 PHE ASP THR LYS GLU VAL GLN ASP LEU LEU LYS ALA ALA SEQRES 3 A 319 ALA ASN LEU ASN GLY ASP ALA GLY ASN ALA ARG PHE ARG SEQRES 4 A 319 GLN ILE VAL HIS ARG LEU LEU SER ASP LEU PHE LYS ALA SEQRES 5 A 319 ILE ASP ASP LEU ASP ILE THR PRO ASP GLU VAL TRP ALA SEQRES 6 A 319 GLY VAL ASN TYR LEU ASN LYS LEU GLY GLN ASP GLY GLU SEQRES 7 A 319 ALA ALA LEU LEU ALA ALA GLY ILE GLY LEU GLU LYS TYR SEQRES 8 A 319 LEU ASP ILE ARG MET ASP ALA ALA ASP ARG ALA ALA GLY SEQRES 9 A 319 LEU ASP GLY GLY THR PRO ARG THR ILE GLU GLY PRO LEU SEQRES 10 A 319 TYR VAL ALA GLY ALA PRO VAL ARG ASP GLY VAL ALA LYS SEQRES 11 A 319 ILE ASP LEU ASP ASP ASP ALA ASP ALA GLY PRO LEU VAL SEQRES 12 A 319 ILE ARG GLY THR VAL THR GLY THR ASP GLY LYS PRO LEU SEQRES 13 A 319 ALA GLY ALA LEU VAL GLU CYS TRP HIS ALA ASN SER LYS SEQRES 14 A 319 GLY PHE TYR SER HIS PHE ASP PRO THR GLY ALA GLN THR SEQRES 15 A 319 ALA PHE ASN LEU ARG GLY ALA VAL ARG THR ASP ALA ASN SEQRES 16 A 319 GLY LYS TYR GLU PHE ARG THR LEU MET PRO VAL GLY TYR SEQRES 17 A 319 GLY CYS PRO PRO GLN GLY ALA THR GLN GLN LEU LEU ASN SEQRES 18 A 319 GLY LEU GLY ARG HIS GLY ASN ARG PRO ALA HIS VAL HIS SEQRES 19 A 319 PHE PHE VAL SER GLY ASP GLY HIS ARG LYS LEU THR THR SEQRES 20 A 319 GLN PHE ASN ILE GLU GLY ASP PRO LEU ILE TRP ASP ASP SEQRES 21 A 319 PHE ALA TYR ALA THR ARG GLU GLU LEU ILE PRO HIS VAL SEQRES 22 A 319 VAL ASP LYS THR GLY GLY ALA ALA LEU GLY MET LYS SER SEQRES 23 A 319 ASP ALA TYR LYS GLU ILE GLU PHE ASP ILE VAL LEU THR SEQRES 24 A 319 PRO LEU LEU ASP GLY ARG ASP ASN GLN VAL VAL HIS ARG SEQRES 25 A 319 PRO ARG ALA SER ALA ASP ALA SEQRES 1 B 319 MET ALA HIS HIS HIS HIS HIS HIS MET SER VAL LYS VAL SEQRES 2 B 319 PHE ASP THR LYS GLU VAL GLN ASP LEU LEU LYS ALA ALA SEQRES 3 B 319 ALA ASN LEU ASN GLY ASP ALA GLY ASN ALA ARG PHE ARG SEQRES 4 B 319 GLN ILE VAL HIS ARG LEU LEU SER ASP LEU PHE LYS ALA SEQRES 5 B 319 ILE ASP ASP LEU ASP ILE THR PRO ASP GLU VAL TRP ALA SEQRES 6 B 319 GLY VAL ASN TYR LEU ASN LYS LEU GLY GLN ASP GLY GLU SEQRES 7 B 319 ALA ALA LEU LEU ALA ALA GLY ILE GLY LEU GLU LYS TYR SEQRES 8 B 319 LEU ASP ILE ARG MET ASP ALA ALA ASP ARG ALA ALA GLY SEQRES 9 B 319 LEU ASP GLY GLY THR PRO ARG THR ILE GLU GLY PRO LEU SEQRES 10 B 319 TYR VAL ALA GLY ALA PRO VAL ARG ASP GLY VAL ALA LYS SEQRES 11 B 319 ILE ASP LEU ASP ASP ASP ALA ASP ALA GLY PRO LEU VAL SEQRES 12 B 319 ILE ARG GLY THR VAL THR GLY THR ASP GLY LYS PRO LEU SEQRES 13 B 319 ALA GLY ALA LEU VAL GLU CYS TRP HIS ALA ASN SER LYS SEQRES 14 B 319 GLY PHE TYR SER HIS PHE ASP PRO THR GLY ALA GLN THR SEQRES 15 B 319 ALA PHE ASN LEU ARG GLY ALA VAL ARG THR ASP ALA ASN SEQRES 16 B 319 GLY LYS TYR GLU PHE ARG THR LEU MET PRO VAL GLY TYR SEQRES 17 B 319 GLY CYS PRO PRO GLN GLY ALA THR GLN GLN LEU LEU ASN SEQRES 18 B 319 GLY LEU GLY ARG HIS GLY ASN ARG PRO ALA HIS VAL HIS SEQRES 19 B 319 PHE PHE VAL SER GLY ASP GLY HIS ARG LYS LEU THR THR SEQRES 20 B 319 GLN PHE ASN ILE GLU GLY ASP PRO LEU ILE TRP ASP ASP SEQRES 21 B 319 PHE ALA TYR ALA THR ARG GLU GLU LEU ILE PRO HIS VAL SEQRES 22 B 319 VAL ASP LYS THR GLY GLY ALA ALA LEU GLY MET LYS SER SEQRES 23 B 319 ASP ALA TYR LYS GLU ILE GLU PHE ASP ILE VAL LEU THR SEQRES 24 B 319 PRO LEU LEU ASP GLY ARG ASP ASN GLN VAL VAL HIS ARG SEQRES 25 B 319 PRO ARG ALA SER ALA ASP ALA HET ZN A 401 1 HET EDO A 402 4 HET CA A 403 1 HET CL A 404 1 HET PG4 A 405 13 HET PG6 A 406 18 HET PG6 A 407 18 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 8 HET EDO A 411 4 HET ZN B 401 1 HET EDO B 402 4 HET PG4 B 403 13 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 EDO 9(C2 H6 O2) FORMUL 5 CA CA 2+ FORMUL 6 CL CL 1- FORMUL 7 PG4 2(C8 H18 O5) FORMUL 8 PG6 2(C12 H26 O6) FORMUL 20 HOH *1130(H2 O) HELIX 1 AA1 THR A 8 ALA A 19 1 12 HELIX 2 AA2 ASN A 27 ASP A 49 1 23 HELIX 3 AA3 THR A 51 ASP A 68 1 18 HELIX 4 AA4 GLU A 70 ILE A 78 1 9 HELIX 5 AA5 GLY A 79 ALA A 95 1 17 HELIX 6 AA6 GLY A 206 GLY A 216 1 11 HELIX 7 AA7 ARG A 258 ILE A 262 5 5 HELIX 8 AA8 GLY A 270 GLY A 275 5 6 HELIX 9 AA9 THR B 8 ALA B 19 1 12 HELIX 10 AB1 ASN B 27 ASP B 49 1 23 HELIX 11 AB2 THR B 51 ASP B 68 1 18 HELIX 12 AB3 GLU B 70 ILE B 78 1 9 HELIX 13 AB4 GLY B 79 GLY B 96 1 18 HELIX 14 AB5 GLY B 206 GLY B 216 1 11 HELIX 15 AB6 ARG B 258 ILE B 262 5 5 HELIX 16 AB7 GLY B 270 GLY B 275 5 6 SHEET 1 AA1 2 VAL A 111 ALA A 112 0 SHEET 2 AA1 2 ALA A 307 SER A 308 1 O ALA A 307 N ALA A 112 SHEET 1 AA2 5 VAL A 116 ASP A 118 0 SHEET 2 AA2 5 ARG A 179 ARG A 183 1 O ARG A 183 N ARG A 117 SHEET 3 AA2 5 LEU A 152 TRP A 156 -1 N VAL A 153 O VAL A 182 SHEET 4 AA2 5 HIS A 224 SER A 230 -1 O PHE A 228 N GLU A 154 SHEET 5 AA2 5 LEU A 237 ASN A 242 -1 O LEU A 237 N VAL A 229 SHEET 1 AA3 5 VAL A 120 LYS A 122 0 SHEET 2 AA3 5 LYS A 189 LEU A 195 1 O ARG A 193 N ALA A 121 SHEET 3 AA3 5 PRO A 133 GLY A 142 -1 N LEU A 134 O THR A 194 SHEET 4 AA3 5 TYR A 281 GLU A 285 1 O LYS A 282 N VAL A 135 SHEET 5 AA3 5 VAL A 265 LYS A 268 -1 N LYS A 268 O TYR A 281 SHEET 1 AA4 4 VAL A 120 LYS A 122 0 SHEET 2 AA4 4 LYS A 189 LEU A 195 1 O ARG A 193 N ALA A 121 SHEET 3 AA4 4 PRO A 133 GLY A 142 -1 N LEU A 134 O THR A 194 SHEET 4 AA4 4 ILE A 288 LEU A 290 1 O LEU A 290 N THR A 141 SHEET 1 AA5 2 VAL B 111 ALA B 112 0 SHEET 2 AA5 2 ALA B 307 SER B 308 1 O ALA B 307 N ALA B 112 SHEET 1 AA6 5 VAL B 116 ASP B 118 0 SHEET 2 AA6 5 ARG B 179 ARG B 183 1 O ARG B 183 N ARG B 117 SHEET 3 AA6 5 LEU B 152 TRP B 156 -1 N VAL B 153 O VAL B 182 SHEET 4 AA6 5 HIS B 224 SER B 230 -1 O PHE B 228 N GLU B 154 SHEET 5 AA6 5 LEU B 237 ASN B 242 -1 O LEU B 237 N VAL B 229 SHEET 1 AA7 5 VAL B 120 LYS B 122 0 SHEET 2 AA7 5 LYS B 189 LEU B 195 1 O ARG B 193 N ALA B 121 SHEET 3 AA7 5 PRO B 133 GLY B 142 -1 N ILE B 136 O PHE B 192 SHEET 4 AA7 5 TYR B 281 GLU B 285 1 O ILE B 284 N VAL B 135 SHEET 5 AA7 5 VAL B 265 LYS B 268 -1 N LYS B 268 O TYR B 281 SHEET 1 AA8 4 VAL B 120 LYS B 122 0 SHEET 2 AA8 4 LYS B 189 LEU B 195 1 O ARG B 193 N ALA B 121 SHEET 3 AA8 4 PRO B 133 GLY B 142 -1 N ILE B 136 O PHE B 192 SHEET 4 AA8 4 ILE B 288 LEU B 290 1 O ILE B 288 N THR B 141 SHEET 1 AA9 2 TYR B 200 GLY B 201 0 SHEET 2 AA9 2 ASN B 220 ARG B 221 -1 O ARG B 221 N TYR B 200 LINK OH TYR A 164 ZN ZN A 401 1555 1555 1.95 LINK OH BTYR A 200 ZN ZN A 401 1555 1555 2.26 LINK NE2 HIS A 224 ZN ZN A 401 1555 1555 2.09 LINK NE2 HIS A 226 ZN ZN A 401 1555 1555 2.07 LINK ZN ZN A 401 O2 BEDO A 402 1555 1555 2.61 LINK ZN ZN A 401 O1 BEDO A 402 1555 1555 1.89 LINK ZN ZN A 401 O AHOH A 507 1555 1555 2.05 LINK ZN ZN A 401 O AHOH A 797 1555 1555 2.18 LINK CA CA A 403 O HOH A 603 1555 1555 2.42 LINK CA CA A 403 O HOH A 727 1555 1555 2.44 LINK CA CA A 403 O HOH A 763 1555 1555 2.35 LINK CA CA A 403 O HOH A 954 1555 1555 2.41 LINK CA CA A 403 O HOH A1008 1555 1555 2.16 LINK CA CA A 403 O HOH A1074 1555 1555 2.40 LINK CA CA A 403 O HOH A1076 1555 1555 2.40 LINK OH TYR B 164 ZN ZN B 401 1555 1555 1.91 LINK OH ATYR B 200 ZN ZN B 401 1555 1555 2.34 LINK NE2 HIS B 224 ZN ZN B 401 1555 1555 2.09 LINK NE2 HIS B 226 ZN ZN B 401 1555 1555 2.06 LINK ZN ZN B 401 O2 BEDO B 402 1555 1555 2.53 LINK ZN ZN B 401 O1 BEDO B 402 1555 1555 2.15 LINK ZN ZN B 401 O AHOH B 501 1555 1555 2.33 LINK ZN ZN B 401 O AHOH B 511 1555 1555 1.95 SITE 1 AC1 7 TYR A 164 TYR A 200 HIS A 224 HIS A 226 SITE 2 AC1 7 EDO A 402 HOH A 507 HOH A 797 SITE 1 AC2 11 GLY A 107 PRO A 108 TYR A 164 TYR A 200 SITE 2 AC2 11 ARG A 221 HIS A 224 HIS A 226 ZN A 401 SITE 3 AC2 11 HOH A 507 HOH A 797 HOH A 925 SITE 1 AC3 7 HOH A 603 HOH A 727 HOH A 763 HOH A 954 SITE 2 AC3 7 HOH A1008 HOH A1074 HOH A1076 SITE 1 AC4 6 HIS A 166 ASP A 168 ALA A 172 GLN A 173 SITE 2 AC4 6 EDO A 409 HOH A 781 SITE 1 AC5 4 TYR A 61 LEU A 211 PG6 A 406 PHE B 30 SITE 1 AC6 5 GLU A 54 LEU A 62 PG4 A 405 ALA B 71 SITE 2 AC6 5 LEU B 80 SITE 1 AC7 4 ASN A 27 PHE A 30 HOH A 519 TYR B 61 SITE 1 AC8 7 ASN A 60 ASN A 63 GLN A 67 HOH A 521 SITE 2 AC8 7 HOH A 547 HOH A 659 HOH B 619 SITE 1 AC9 4 HIS A 166 GLN A 173 CL A 404 HOH A 504 SITE 1 AD1 7 LEU A 37 ASP A 40 LEU A 41 HOH A 513 SITE 2 AD1 7 HOH A 539 LEU B 37 ASP B 40 SITE 1 AD2 6 ILE A 249 ASP A 252 TYR A 255 ALA A 256 SITE 2 AD2 6 THR A 257 HOH A 728 SITE 1 AD3 7 TYR B 164 TYR B 200 HIS B 224 HIS B 226 SITE 2 AD3 7 EDO B 402 HOH B 501 HOH B 511 SITE 1 AD4 11 LEU B 109 TYR B 164 TYR B 200 ARG B 221 SITE 2 AD4 11 HIS B 224 HIS B 226 ZN B 401 HOH B 501 SITE 3 AD4 11 HOH B 511 HOH B 653 HOH B 746 SITE 1 AD5 3 LEU A 80 GLU B 54 LEU B 62 SITE 1 AD6 6 ARG B 217 HIS B 218 ASP B 251 PHE B 253 SITE 2 AD6 6 HOH B 534 HOH B 814 SITE 1 AD7 5 ASP B 118 GLY B 119 ASP B 185 HOH B 582 SITE 2 AD7 5 HOH B 658 SITE 1 AD8 5 HIS B 166 ASP B 168 ALA B 172 GLN B 173 SITE 2 AD8 5 HOH B 574 CRYST1 115.220 52.330 121.290 90.00 93.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008679 0.000000 0.000478 0.00000 SCALE2 0.000000 0.019109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008257 0.00000