HEADER DNA BINDING PROTEIN 31-JAN-17 5UNK TITLE NMR STRUCTURE OF THE RED SUBDOMAIN OF THE SLEEPING BEAUTY TRANSPOSASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLEEPING BEAUTY TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 50-106; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ONCORHYNCHUS MYKISS; SOURCE 3 ORGANISM_COMMON: RAINBOW TROUT; SOURCE 4 ORGANISM_TAXID: 8022; SOURCE 5 GENE: GSONMT00020475001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICAL, HELIX-TURN-HELIX, DNA-BINDING, TRANSPOSASE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.A.KONNOVA,C.M.SINGER,I.V.NESMELOVA REVDAT 5 15-MAY-24 5UNK 1 REMARK REVDAT 4 14-JUN-23 5UNK 1 REMARK REVDAT 3 01-JAN-20 5UNK 1 REMARK REVDAT 2 13-SEP-17 5UNK 1 REMARK REVDAT 1 07-JUN-17 5UNK 0 JRNL AUTH T.A.KONNOVA,C.M.SINGER,I.V.NESMELOVA JRNL TITL NMR SOLUTION STRUCTURE OF THE RED SUBDOMAIN OF THE SLEEPING JRNL TITL 2 BEAUTY TRANSPOSASE. JRNL REF PROTEIN SCI. V. 26 1171 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28345263 JRNL DOI 10.1002/PRO.3167 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226116. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 650 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MG/ML [U-13C; U-15N] RED REMARK 210 SUBDOMAIN OF THE SLEEPING BEAUTY REMARK 210 TRANSPOSASE, 20 MM MES, 650 MM REMARK 210 SODIUM SULFATE, 95% H2O/5% D2O; REMARK 210 2 MG/ML [U-13C; U-15N] RED REMARK 210 SUBDOMAIN OF THE SLEEPING BEAUTY REMARK 210 TRANSPOSASE, 20 MM MES, 650 MM REMARK 210 SODIUM SULFATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH, CARA, NMRPIPE, TALOS, REMARK 210 TOPSPIN REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A 15 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 46 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 22 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 TYR A 49 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 8 TYR A 49 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 9 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 75.58 74.65 REMARK 500 1 LYS A 60 -125.21 60.58 REMARK 500 2 ALA A 58 -64.77 -103.43 REMARK 500 2 LEU A 61 121.47 74.49 REMARK 500 3 ARG A 8 23.71 -151.97 REMARK 500 3 ASN A 20 76.30 -115.67 REMARK 500 3 MET A 31 9.36 -67.70 REMARK 500 3 LYS A 60 -48.76 69.41 REMARK 500 5 MET A 3 -0.11 72.82 REMARK 500 5 ARG A 8 43.91 -82.48 REMARK 500 5 ALA A 58 -71.16 65.34 REMARK 500 5 ARG A 59 -91.14 -132.90 REMARK 500 5 LYS A 60 -50.38 -135.53 REMARK 500 6 SER A 57 -163.69 64.08 REMARK 500 6 ALA A 58 -67.41 -134.72 REMARK 500 6 ARG A 59 -119.29 58.13 REMARK 500 6 LEU A 61 -48.78 67.95 REMARK 500 7 ARG A 56 -127.68 55.36 REMARK 500 8 LEU A 5 -120.07 53.20 REMARK 500 8 ARG A 59 119.52 70.39 REMARK 500 9 ARG A 59 158.62 74.54 REMARK 500 10 SER A 57 -50.53 -141.70 REMARK 500 10 ALA A 58 -94.06 -117.44 REMARK 500 10 LYS A 60 -123.39 54.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30239 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE RED SUBDOMAIN OF THE SLEEPING BEAUTY REMARK 900 TRANSPOSASE DBREF1 5UNK A 4 60 UNP A0A060ZAA1_ONCMY DBREF2 5UNK A A0A060ZAA1 50 106 SEQADV 5UNK ALA A 1 UNP A0A060ZAA EXPRESSION TAG SEQADV 5UNK SER A 2 UNP A0A060ZAA EXPRESSION TAG SEQADV 5UNK MET A 3 UNP A0A060ZAA EXPRESSION TAG SEQADV 5UNK LEU A 61 UNP A0A060ZAA EXPRESSION TAG SEQADV 5UNK GLU A 62 UNP A0A060ZAA EXPRESSION TAG SEQRES 1 A 62 ALA SER MET VAL LEU SER PRO ARG ASP GLU ARG THR LEU SEQRES 2 A 62 VAL ARG LYS VAL GLN ILE ASN PRO ARG THR THR ALA LYS SEQRES 3 A 62 ASP LEU VAL LYS MET LEU GLU GLU THR GLY THR LYS VAL SEQRES 4 A 62 SER ILE SER THR VAL LYS ARG VAL LEU TYR ARG HIS ASN SEQRES 5 A 62 LEU LYS GLY ARG SER ALA ARG LYS LEU GLU HELIX 1 AA1 ARG A 8 ASN A 20 1 13 HELIX 2 AA2 THR A 24 GLY A 36 1 13 HELIX 3 AA3 SER A 40 LYS A 54 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1