HEADER TRANSFERASE 03-FEB-17 5UPK TITLE CDC42 BINDS PAK4 VIA AN EXTENDED GTPASE-EFFECTOR INTERFACE - 3 TITLE 2 PEPTIDE: PAK4CAT, PAK4-N45, CDC42 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-45; COMPND 5 SYNONYM: P21-ACTIVATED KINASE 4,PAK-4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 109-426; COMPND 12 SYNONYM: P21-ACTIVATED KINASE 4,PAK-4; COMPND 13 EC: 2.7.11.1; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: CELL DIVISION CONTROL PROTEIN 42 HOMOLOG; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: G25K GTP-BINDING PROTEIN; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: ISOFORM2; SOURCE 6 GENE: PAK4, KIAA1142; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RILP; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28A; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 VARIANT: ISOFORM2; SOURCE 17 GENE: PAK4, KIAA1142; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RILP; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 GENE: CDC42; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSFERASE, GTPASE, KINASE, CRIB EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 5 04-OCT-23 5UPK 1 REMARK REVDAT 4 01-JAN-20 5UPK 1 REMARK REVDAT 3 24-JAN-18 5UPK 1 JRNL REVDAT 2 17-JAN-18 5UPK 1 JRNL REVDAT 1 27-DEC-17 5UPK 0 JRNL AUTH B.H.HA,T.J.BOGGON JRNL TITL CDC42 BINDS PAK4 VIA AN EXTENDED GTPASE-EFFECTOR INTERFACE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 531 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29295922 JRNL DOI 10.1073/PNAS.1717437115 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.415 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.263 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4133 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4021 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5616 ; 1.351 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9271 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 6.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;35.369 ;23.829 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 723 ;13.958 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4530 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 899 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 1.250 ; 4.458 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2011 ; 1.250 ; 4.457 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2508 ; 2.224 ; 6.678 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2509 ; 2.223 ; 6.678 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2121 ; 1.177 ; 4.701 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2118 ; 1.169 ; 4.697 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3106 ; 2.082 ; 6.980 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4393 ; 4.032 ;51.446 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4384 ; 4.028 ;51.361 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5378 21.7926 34.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.1610 REMARK 3 T33: 0.1446 T12: -0.0391 REMARK 3 T13: -0.0090 T23: -0.1232 REMARK 3 L TENSOR REMARK 3 L11: 7.8517 L22: 3.2417 REMARK 3 L33: 5.0475 L12: -3.1906 REMARK 3 L13: -3.7069 L23: 2.9895 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: 0.3972 S13: -0.6833 REMARK 3 S21: 0.2045 S22: -0.5343 S23: 0.4562 REMARK 3 S31: 0.0210 S32: -0.6853 S33: 0.6348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 300 B 352 REMARK 3 RESIDUE RANGE : B 353 B 411 REMARK 3 RESIDUE RANGE : B 412 B 588 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9143 13.0013 13.9198 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.0797 REMARK 3 T33: 0.0735 T12: -0.0451 REMARK 3 T13: -0.0637 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.6997 L22: 1.0670 REMARK 3 L33: 2.6362 L12: 0.1219 REMARK 3 L13: 1.4802 L23: 0.9661 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: -0.0634 S13: -0.1994 REMARK 3 S21: -0.1262 S22: 0.2649 S23: 0.0111 REMARK 3 S31: -0.0866 S32: 0.0932 S33: -0.1441 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 65 REMARK 3 RESIDUE RANGE : C 66 C 92 REMARK 3 RESIDUE RANGE : C 93 C 121 REMARK 3 RESIDUE RANGE : C 122 C 179 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5496 33.3751 32.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.2758 T22: 0.2870 REMARK 3 T33: 0.1230 T12: -0.1069 REMARK 3 T13: -0.1322 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 2.3235 L22: 3.3119 REMARK 3 L33: 4.9409 L12: -0.2636 REMARK 3 L13: -1.5774 L23: 0.9740 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: -0.0684 S13: 0.0907 REMARK 3 S21: -0.0893 S22: -0.4485 S23: -0.0591 REMARK 3 S31: -1.0666 S32: 0.5058 S33: 0.3428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : 0.16300 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 22% PEG1,000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.81050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 44 REMARK 465 GLU A 45 REMARK 465 MET B 246 REMARK 465 GLY B 247 REMARK 465 SER B 248 REMARK 465 SER B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 LEU B 259 REMARK 465 VAL B 260 REMARK 465 PRO B 261 REMARK 465 ARG B 262 REMARK 465 GLY B 263 REMARK 465 SER B 264 REMARK 465 HIS B 265 REMARK 465 MET B 266 REMARK 465 GLU B 267 REMARK 465 ASN B 268 REMARK 465 LEU B 269 REMARK 465 TYR B 270 REMARK 465 PHE B 271 REMARK 465 GLN B 272 REMARK 465 GLY B 273 REMARK 465 ALA B 274 REMARK 465 ARG B 275 REMARK 465 ALA B 276 REMARK 465 ARG B 277 REMARK 465 GLN B 278 REMARK 465 GLU B 279 REMARK 465 ASN B 280 REMARK 465 GLY B 281 REMARK 465 MET B 282 REMARK 465 PRO B 283 REMARK 465 GLU B 284 REMARK 465 LYS B 285 REMARK 465 PRO B 286 REMARK 465 PRO B 287 REMARK 465 GLY B 288 REMARK 465 PRO B 289 REMARK 465 ARG B 290 REMARK 465 SER B 291 REMARK 465 PRO B 292 REMARK 465 GLN B 293 REMARK 465 ARG B 294 REMARK 465 GLU B 295 REMARK 465 PRO B 296 REMARK 465 GLN B 297 REMARK 465 ARG B 298 REMARK 465 VAL B 299 REMARK 465 ARG B 589 REMARK 465 THR B 590 REMARK 465 ARG B 591 REMARK 465 MET C 1 REMARK 465 GLN C 134 REMARK 465 LYS C 135 REMARK 465 PRO C 136 REMARK 465 HIS C 180 REMARK 465 HIS C 181 REMARK 465 HIS C 182 REMARK 465 HIS C 183 REMARK 465 HIS C 184 REMARK 465 HIS C 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 62.23 -117.94 REMARK 500 VAL B 367 -65.61 -93.38 REMARK 500 ASP B 440 46.87 -155.91 REMARK 500 ASP B 458 61.50 61.71 REMARK 500 ALA C 13 2.65 56.61 REMARK 500 VAL C 36 -62.57 -94.73 REMARK 500 LYS C 96 -65.68 -135.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP B 600 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 17 OG1 REMARK 620 2 VAL C 33 O 142.4 REMARK 620 3 THR C 35 OG1 65.3 110.5 REMARK 620 4 GNP C 200 O1G 108.8 100.1 62.7 REMARK 620 5 GNP C 200 O1B 67.7 148.6 88.7 66.1 REMARK 620 6 GNP C 200 O2A 99.8 89.8 159.6 113.5 72.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UPL RELATED DB: PDB DBREF 5UPK A 1 45 UNP O96013 PAK4_HUMAN 1 45 DBREF 5UPK B 274 591 UNP O96013 PAK4_HUMAN 109 426 DBREF 5UPK C 1 177 UNP P60953 CDC42_HUMAN 1 177 SEQADV 5UPK SER A -2 UNP O96013 EXPRESSION TAG SEQADV 5UPK GLY A -1 UNP O96013 EXPRESSION TAG SEQADV 5UPK SER A 0 UNP O96013 EXPRESSION TAG SEQADV 5UPK MET B 246 UNP O96013 INITIATING METHIONINE SEQADV 5UPK GLY B 247 UNP O96013 EXPRESSION TAG SEQADV 5UPK SER B 248 UNP O96013 EXPRESSION TAG SEQADV 5UPK SER B 249 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 250 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 251 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 252 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 253 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 254 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 255 UNP O96013 EXPRESSION TAG SEQADV 5UPK SER B 256 UNP O96013 EXPRESSION TAG SEQADV 5UPK SER B 257 UNP O96013 EXPRESSION TAG SEQADV 5UPK GLY B 258 UNP O96013 EXPRESSION TAG SEQADV 5UPK LEU B 259 UNP O96013 EXPRESSION TAG SEQADV 5UPK VAL B 260 UNP O96013 EXPRESSION TAG SEQADV 5UPK PRO B 261 UNP O96013 EXPRESSION TAG SEQADV 5UPK ARG B 262 UNP O96013 EXPRESSION TAG SEQADV 5UPK GLY B 263 UNP O96013 EXPRESSION TAG SEQADV 5UPK SER B 264 UNP O96013 EXPRESSION TAG SEQADV 5UPK HIS B 265 UNP O96013 EXPRESSION TAG SEQADV 5UPK MET B 266 UNP O96013 EXPRESSION TAG SEQADV 5UPK GLU B 267 UNP O96013 EXPRESSION TAG SEQADV 5UPK ASN B 268 UNP O96013 EXPRESSION TAG SEQADV 5UPK LEU B 269 UNP O96013 EXPRESSION TAG SEQADV 5UPK TYR B 270 UNP O96013 EXPRESSION TAG SEQADV 5UPK PHE B 271 UNP O96013 EXPRESSION TAG SEQADV 5UPK GLN B 272 UNP O96013 EXPRESSION TAG SEQADV 5UPK GLY B 273 UNP O96013 EXPRESSION TAG SEQADV 5UPK LEU C 61 UNP P60953 GLN 61 ENGINEERED MUTATION SEQADV 5UPK ARG C 163 UNP P60953 LYS 163 CONFLICT SEQADV 5UPK LEU C 178 UNP P60953 EXPRESSION TAG SEQADV 5UPK GLU C 179 UNP P60953 EXPRESSION TAG SEQADV 5UPK HIS C 180 UNP P60953 EXPRESSION TAG SEQADV 5UPK HIS C 181 UNP P60953 EXPRESSION TAG SEQADV 5UPK HIS C 182 UNP P60953 EXPRESSION TAG SEQADV 5UPK HIS C 183 UNP P60953 EXPRESSION TAG SEQADV 5UPK HIS C 184 UNP P60953 EXPRESSION TAG SEQADV 5UPK HIS C 185 UNP P60953 EXPRESSION TAG SEQRES 1 A 48 SER GLY SER MET PHE GLY LYS ARG LYS LYS ARG VAL GLU SEQRES 2 A 48 ILE SER ALA PRO SER ASN PHE GLU HIS ARG VAL HIS THR SEQRES 3 A 48 GLY PHE ASP GLN HIS GLU GLN LYS PHE THR GLY LEU PRO SEQRES 4 A 48 ARG GLN TRP GLN SER LEU ILE GLU GLU SEQRES 1 B 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 346 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 B 346 GLN GLY ALA ARG ALA ARG GLN GLU ASN GLY MET PRO GLU SEQRES 4 B 346 LYS PRO PRO GLY PRO ARG SER PRO GLN ARG GLU PRO GLN SEQRES 5 B 346 ARG VAL SER HIS GLU GLN PHE ARG ALA ALA LEU GLN LEU SEQRES 6 B 346 VAL VAL ASP PRO GLY ASP PRO ARG SER TYR LEU ASP ASN SEQRES 7 B 346 PHE ILE LYS ILE GLY GLU GLY SER THR GLY ILE VAL CYS SEQRES 8 B 346 ILE ALA THR VAL ARG SER SER GLY LYS LEU VAL ALA VAL SEQRES 9 B 346 LYS LYS MET ASP LEU ARG LYS GLN GLN ARG ARG GLU LEU SEQRES 10 B 346 LEU PHE ASN GLU VAL VAL ILE MET ARG ASP TYR GLN HIS SEQRES 11 B 346 GLU ASN VAL VAL GLU MET TYR ASN SER TYR LEU VAL GLY SEQRES 12 B 346 ASP GLU LEU TRP VAL VAL MET GLU PHE LEU GLU GLY GLY SEQRES 13 B 346 ALA LEU THR ASP ILE VAL THR HIS THR ARG MET ASN GLU SEQRES 14 B 346 GLU GLN ILE ALA ALA VAL CYS LEU ALA VAL LEU GLN ALA SEQRES 15 B 346 LEU SER VAL LEU HIS ALA GLN GLY VAL ILE HIS ARG ASP SEQRES 16 B 346 ILE LYS SER ASP SER ILE LEU LEU THR HIS ASP GLY ARG SEQRES 17 B 346 VAL LYS LEU SER ASP PHE GLY PHE CYS ALA GLN VAL SER SEQRES 18 B 346 LYS GLU VAL PRO ARG ARG LYS SEP LEU VAL GLY THR PRO SEQRES 19 B 346 TYR TRP MET ALA PRO GLU LEU ILE SER ARG LEU PRO TYR SEQRES 20 B 346 GLY PRO GLU VAL ASP ILE TRP SER LEU GLY ILE MET VAL SEQRES 21 B 346 ILE GLU MET VAL ASP GLY GLU PRO PRO TYR PHE ASN GLU SEQRES 22 B 346 PRO PRO LEU LYS ALA MET LYS MET ILE ARG ASP ASN LEU SEQRES 23 B 346 PRO PRO ARG LEU LYS ASN LEU HIS LYS VAL SER PRO SER SEQRES 24 B 346 LEU LYS GLY PHE LEU ASP ARG LEU LEU VAL ARG ASP PRO SEQRES 25 B 346 ALA GLN ARG ALA THR ALA ALA GLU LEU LEU LYS HIS PRO SEQRES 26 B 346 PHE LEU ALA LYS ALA GLY PRO PRO ALA SER ILE VAL PRO SEQRES 27 B 346 LEU MET ARG GLN ASN ARG THR ARG SEQRES 1 C 185 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 C 185 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 C 185 LYS PHE PRO SER GLU TYR VAL PRO THR VAL PHE ASP ASN SEQRES 4 C 185 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 C 185 LEU GLY LEU PHE ASP THR ALA GLY LEU GLU ASP TYR ASP SEQRES 6 C 185 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 C 185 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 C 185 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 C 185 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 C 185 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 C 185 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 C 185 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 C 185 CYS SER ALA LEU THR GLN ARG GLY LEU LYS ASN VAL PHE SEQRES 14 C 185 ASP GLU ALA ILE LEU ALA ALA LEU LEU GLU HIS HIS HIS SEQRES 15 C 185 HIS HIS HIS MODRES 5UPK SEP B 474 SER MODIFIED RESIDUE HET SEP B 474 10 HET ANP B 600 23 HET GNP C 200 32 HET MG C 201 1 HETNAM SEP PHOSPHOSERINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 GNP C10 H17 N6 O13 P3 FORMUL 6 MG MG 2+ FORMUL 7 HOH *25(H2 O) HELIX 1 AA1 GLN A 38 LEU A 42 5 5 HELIX 2 AA2 HIS B 301 VAL B 312 1 12 HELIX 3 AA3 ASP B 316 SER B 319 5 4 HELIX 4 AA4 ARG B 355 GLN B 357 5 3 HELIX 5 AA5 ARG B 359 GLU B 361 5 3 HELIX 6 AA6 LEU B 362 TYR B 373 1 12 HELIX 7 AA7 LEU B 403 THR B 410 1 8 HELIX 8 AA8 ASN B 413 GLN B 434 1 22 HELIX 9 AA9 LYS B 442 ASP B 444 5 3 HELIX 10 AB1 THR B 478 MET B 482 5 5 HELIX 11 AB2 ALA B 483 SER B 488 1 6 HELIX 12 AB3 PRO B 494 GLY B 511 1 18 HELIX 13 AB4 PRO B 519 ASN B 530 1 12 HELIX 14 AB5 ASN B 537 VAL B 541 5 5 HELIX 15 AB6 SER B 542 LEU B 553 1 12 HELIX 16 AB7 ASP B 556 ARG B 560 5 5 HELIX 17 AB8 THR B 562 LYS B 568 1 7 HELIX 18 AB9 HIS B 569 ALA B 575 5 7 HELIX 19 AC1 PRO B 577 MET B 585 5 9 HELIX 20 AC2 GLY C 15 ASN C 26 1 12 HELIX 21 AC3 LEU C 61 ASP C 65 5 5 HELIX 22 AC4 LEU C 67 TYR C 72 5 6 HELIX 23 AC5 SER C 86 LYS C 96 1 11 HELIX 24 AC6 LYS C 96 CYS C 105 1 10 HELIX 25 AC7 GLN C 116 ASP C 121 5 6 HELIX 26 AC8 ASP C 122 LYS C 133 1 12 HELIX 27 AC9 THR C 138 LYS C 150 1 13 HELIX 28 AD1 GLY C 164 GLU C 179 1 16 SHEET 1 AA1 8 PHE A 32 THR A 33 0 SHEET 2 AA1 8 SER A 15 PHE A 25 -1 N GLY A 24 O THR A 33 SHEET 3 AA1 8 PHE C 37 ILE C 46 -1 O THR C 43 N SER A 15 SHEET 4 AA1 8 GLU C 49 THR C 58 -1 O LEU C 53 N VAL C 42 SHEET 5 AA1 8 THR C 3 GLY C 10 1 N ILE C 4 O GLY C 54 SHEET 6 AA1 8 VAL C 77 SER C 83 1 O CYS C 81 N VAL C 9 SHEET 7 AA1 8 PHE C 110 THR C 115 1 O LEU C 111 N VAL C 80 SHEET 8 AA1 8 TYR C 154 GLU C 156 1 O VAL C 155 N GLY C 114 SHEET 1 AA2 5 LEU B 321 GLU B 329 0 SHEET 2 AA2 5 ILE B 334 VAL B 340 -1 O VAL B 335 N ILE B 327 SHEET 3 AA2 5 LEU B 346 ASP B 353 -1 O VAL B 349 N CYS B 336 SHEET 4 AA2 5 GLU B 390 GLU B 396 -1 O LEU B 391 N MET B 352 SHEET 5 AA2 5 MET B 381 VAL B 387 -1 N ASN B 383 O VAL B 394 SHEET 1 AA3 3 GLY B 401 ALA B 402 0 SHEET 2 AA3 3 ILE B 446 LEU B 448 -1 O LEU B 448 N GLY B 401 SHEET 3 AA3 3 VAL B 454 LEU B 456 -1 O LYS B 455 N LEU B 447 SHEET 1 AA4 2 VAL B 436 ILE B 437 0 SHEET 2 AA4 2 ALA B 463 GLN B 464 -1 O ALA B 463 N ILE B 437 LINK C LYS B 473 N SEP B 474 1555 1555 1.33 LINK C SEP B 474 N LEU B 475 1555 1555 1.33 LINK OG1 THR C 17 MG MG C 201 1555 1555 2.64 LINK O VAL C 33 MG MG C 201 1555 1555 2.95 LINK OG1 THR C 35 MG MG C 201 1555 1555 2.43 LINK O1G GNP C 200 MG MG C 201 1555 1555 2.75 LINK O1B GNP C 200 MG MG C 201 1555 1555 2.60 LINK O2A GNP C 200 MG MG C 201 1555 1555 2.32 CISPEP 1 LEU C 149 LYS C 150 0 -7.59 SITE 1 AC1 10 GLU B 329 GLY B 330 VAL B 335 LYS B 350 SITE 2 AC1 10 MET B 395 GLU B 396 PHE B 397 LEU B 398 SITE 3 AC1 10 LEU B 447 HOH B 722 SITE 1 AC2 19 ALA C 13 VAL C 14 GLY C 15 LYS C 16 SITE 2 AC2 19 THR C 17 CYS C 18 GLU C 31 TYR C 32 SITE 3 AC2 19 THR C 35 GLY C 60 LEU C 61 GLN C 116 SITE 4 AC2 19 ASP C 118 LEU C 119 SER C 158 ALA C 159 SITE 5 AC2 19 LEU C 160 MG C 201 HOH C 301 SITE 1 AC3 4 THR C 17 VAL C 33 THR C 35 GNP C 200 CRYST1 58.465 61.621 85.791 90.00 91.57 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017104 0.000000 0.000470 0.00000 SCALE2 0.000000 0.016228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011661 0.00000