HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-FEB-17 5UPV TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE TITLE 2 DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS IN THE PRESENCE OF G36 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMPDH,IMPDH2; COMPND 5 EC: 1.1.1.205; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: GUAB, GUAB2, RV3411C, MTCY78.17; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BM21(DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS IMPDH, DELTA CBS, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 2 OF INFECTIOUS DISEASES, CSGID, OXIDOREDUCTASE, OXIDOREDUCTASE- KEYWDS 3 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,R.MULLIGAN,M.MAKOWSKA-GRZYSKA,M.GU,W.F.ANDERSON, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 5 04-OCT-23 5UPV 1 REMARK REVDAT 4 01-JAN-20 5UPV 1 REMARK REVDAT 3 20-SEP-17 5UPV 1 REMARK REVDAT 2 12-APR-17 5UPV 1 REMARK REVDAT 1 22-FEB-17 5UPV 0 JRNL AUTH Y.KIM,N.MALTSEVA,R.MULLIGAN,M.MAKOWSKA-GRZYSKA,M.GU, JRNL AUTH 2 W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE JRNL TITL 2 MONOPHOSPHATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS JRNL TITL 3 IN THE PRESENCE OF G36 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 39031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7162 - 3.8314 0.97 2919 127 0.1437 0.1569 REMARK 3 2 3.8314 - 3.0416 0.98 2874 197 0.1516 0.1664 REMARK 3 3 3.0416 - 2.6573 0.99 2925 143 0.1594 0.1586 REMARK 3 4 2.6573 - 2.4144 1.00 2926 154 0.1539 0.1821 REMARK 3 5 2.4144 - 2.2413 1.00 2949 124 0.1561 0.1890 REMARK 3 6 2.2413 - 2.1092 0.99 2924 143 0.1563 0.1985 REMARK 3 7 2.1092 - 2.0036 1.00 2900 165 0.1603 0.2049 REMARK 3 8 2.0036 - 1.9164 1.00 2938 138 0.1733 0.2096 REMARK 3 9 1.9164 - 1.8426 1.00 2937 148 0.1966 0.2230 REMARK 3 10 1.8426 - 1.7790 0.98 2913 117 0.2196 0.2746 REMARK 3 11 1.7790 - 1.7234 0.99 2924 116 0.2441 0.2339 REMARK 3 12 1.7234 - 1.6741 0.92 2655 164 0.2930 0.3337 REMARK 3 13 1.6741 - 1.6301 0.81 2381 130 0.3079 0.3352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2641 REMARK 3 ANGLE : 0.895 3591 REMARK 3 CHIRALITY : 0.057 430 REMARK 3 PLANARITY : 0.006 466 REMARK 3 DIHEDRAL : 11.242 1593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2806 10.0792 -16.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.2668 T22: 0.2775 REMARK 3 T33: 0.1781 T12: -0.0222 REMARK 3 T13: 0.0205 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 7.0421 L22: 2.5937 REMARK 3 L33: 1.7005 L12: -2.5473 REMARK 3 L13: 1.2436 L23: -2.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: 0.8582 S13: -0.0104 REMARK 3 S21: -0.3338 S22: 0.1912 S23: 0.1506 REMARK 3 S31: 0.0282 S32: 0.1306 S33: -0.1485 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5073 30.6739 0.4477 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.2395 REMARK 3 T33: 0.2830 T12: -0.0294 REMARK 3 T13: -0.0086 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.8768 L22: 1.6378 REMARK 3 L33: 0.6412 L12: -0.3277 REMARK 3 L13: 0.0466 L23: 0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.0592 S13: 0.2698 REMARK 3 S21: 0.0616 S22: 0.0094 S23: -0.2177 REMARK 3 S31: -0.1571 S32: 0.0911 S33: -0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2367 22.5951 -6.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.2074 REMARK 3 T33: 0.2191 T12: -0.0062 REMARK 3 T13: -0.0061 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.7721 L22: 0.6717 REMARK 3 L33: 0.6763 L12: -0.5686 REMARK 3 L13: 0.0735 L23: 0.2515 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.0522 S13: 0.0727 REMARK 3 S21: -0.0034 S22: -0.0249 S23: -0.0196 REMARK 3 S31: -0.0961 S32: 0.0213 S33: 0.0197 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7844 19.9097 19.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.4383 T22: 0.5206 REMARK 3 T33: 0.2409 T12: -0.0178 REMARK 3 T13: -0.0461 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 3.4800 L22: 3.3740 REMARK 3 L33: 4.5472 L12: -0.4156 REMARK 3 L13: 0.5930 L23: -2.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.1599 S12: -1.0098 S13: -0.2001 REMARK 3 S21: 0.8842 S22: -0.0416 S23: 0.0270 REMARK 3 S31: 0.0200 S32: -0.5205 S33: -0.0544 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1208 24.3534 13.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.3607 REMARK 3 T33: 0.2248 T12: -0.0118 REMARK 3 T13: 0.0046 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 8.7220 L22: 1.6809 REMARK 3 L33: 3.6892 L12: -0.5753 REMARK 3 L13: 3.6219 L23: -0.5529 REMARK 3 S TENSOR REMARK 3 S11: -0.0908 S12: -0.7729 S13: -0.1073 REMARK 3 S21: 0.2153 S22: 0.1829 S23: 0.3487 REMARK 3 S31: -0.2964 S32: -0.3209 S33: -0.0600 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 470 THROUGH 508 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2177 9.4745 -3.5946 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.1663 REMARK 3 T33: 0.2046 T12: 0.0066 REMARK 3 T13: 0.0012 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.6023 L22: 2.5989 REMARK 3 L33: 1.8702 L12: 0.0830 REMARK 3 L13: 0.3107 L23: 1.3607 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.1032 S13: -0.1262 REMARK 3 S21: 0.0879 S22: 0.0522 S23: -0.1582 REMARK 3 S31: 0.0472 S32: 0.0818 S33: -0.0751 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 509 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5233 -0.8027 10.2294 REMARK 3 T TENSOR REMARK 3 T11: 1.3534 T22: 1.0546 REMARK 3 T33: 0.9454 T12: -0.1031 REMARK 3 T13: 0.0893 T23: -0.1191 REMARK 3 L TENSOR REMARK 3 L11: 1.3934 L22: 2.8204 REMARK 3 L33: 0.8307 L12: 0.8323 REMARK 3 L13: -0.0621 L23: 0.0717 REMARK 3 S TENSOR REMARK 3 S11: -0.1086 S12: -0.4292 S13: -0.0164 REMARK 3 S21: 0.1538 S22: 0.0933 S23: -0.1280 REMARK 3 S31: 0.2433 S32: 0.4308 S33: -0.0428 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.78800 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: 4ZQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M HEPES PH REMARK 280 7.5, 10 % (V/V) ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.06400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.06400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.18200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.06400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.06400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.18200 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 44.06400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.06400 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.18200 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 44.06400 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 44.06400 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.18200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 TYR A 19 REMARK 465 VAL A 20 REMARK 465 ARG A 21 REMARK 465 MET A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 GLY A 432 REMARK 465 ARG A 433 REMARK 465 GLY A 434 REMARK 465 GLY A 435 REMARK 465 ALA A 436 REMARK 465 THR A 437 REMARK 465 SER A 438 REMARK 465 TYR A 439 REMARK 465 SER A 440 REMARK 465 LYS A 441 REMARK 465 ASP A 442 REMARK 465 ARG A 443 REMARK 465 TYR A 444 REMARK 465 PHE A 445 REMARK 465 ALA A 446 REMARK 465 ASP A 447 REMARK 465 ASP A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 SER A 451 REMARK 465 GLU A 452 REMARK 465 ASP A 453 REMARK 465 LYS A 454 REMARK 465 TYR A 527 REMARK 465 ALA A 528 REMARK 465 ARG A 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 79 49.66 -86.30 REMARK 500 VAL A 88 -55.24 -126.83 REMARK 500 GLU A 90 -159.90 -117.80 REMARK 500 ASN A 109 57.04 -91.28 REMARK 500 ALA A 315 13.60 -141.74 REMARK 500 ASN A 414 54.85 35.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8KV A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZQM RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE PRESENCE OF XMP AND NAD REMARK 900 RELATED ID: 4ZQN RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE PRESENCE OF IMP AND P41 REMARK 900 RELATED ID: 4ZQO RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE PRESENCE OF IMP AND Q67 REMARK 900 RELATED ID: 4ZQP RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE PRESENCE OF IMP AND MAD1 REMARK 900 RELATED ID: 4ZQR RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APP-FORM REMARK 900 RELATED ID: 5UPU RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE PRESENCE OF IMP AND G36 REMARK 900 RELATED ID: CSGID-IDP91646 RELATED DB: TARGETTRACK DBREF 5UPV A 1 125 UNP P9WKI7 IMDH_MYCTU 1 125 DBREF 5UPV A 256 529 UNP P9WKI7 IMDH_MYCTU 256 529 SEQADV 5UPV SER A -2 UNP P9WKI7 EXPRESSION TAG SEQADV 5UPV ASN A -1 UNP P9WKI7 EXPRESSION TAG SEQADV 5UPV ALA A 0 UNP P9WKI7 EXPRESSION TAG SEQADV 5UPV GLY A 126 UNP P9WKI7 LINKER SEQADV 5UPV GLY A 127 UNP P9WKI7 LINKER SEQADV 5UPV LEU A 253 UNP P9WKI7 LINKER SEQADV 5UPV LEU A 254 UNP P9WKI7 LINKER SEQADV 5UPV VAL A 255 UNP P9WKI7 LINKER SEQRES 1 A 407 SER ASN ALA MET SER ARG GLY MET SER GLY LEU GLU ASP SEQRES 2 A 407 SER SER ASP LEU VAL VAL SER PRO TYR VAL ARG MET GLY SEQRES 3 A 407 GLY LEU THR THR ASP PRO VAL PRO THR GLY GLY ASP ASP SEQRES 4 A 407 PRO HIS LYS VAL ALA MET LEU GLY LEU THR PHE ASP ASP SEQRES 5 A 407 VAL LEU LEU LEU PRO ALA ALA SER ASP VAL VAL PRO ALA SEQRES 6 A 407 THR ALA ASP THR SER SER GLN LEU THR LYS LYS ILE ARG SEQRES 7 A 407 LEU LYS VAL PRO LEU VAL SER SER ALA MET ASP THR VAL SEQRES 8 A 407 THR GLU SER ARG MET ALA ILE ALA MET ALA ARG ALA GLY SEQRES 9 A 407 GLY MET GLY VAL LEU HIS ARG ASN LEU PRO VAL ALA GLU SEQRES 10 A 407 GLN ALA GLY GLN VAL GLU MET VAL LYS ARG SER GLY GLY SEQRES 11 A 407 LEU LEU VAL GLY ALA ALA VAL GLY VAL GLY GLY ASP ALA SEQRES 12 A 407 TRP VAL ARG ALA MET MET LEU VAL ASP ALA GLY VAL ASP SEQRES 13 A 407 VAL LEU VAL VAL ASP THR ALA HIS ALA HIS ASN ARG LEU SEQRES 14 A 407 VAL LEU ASP MET VAL GLY LYS LEU LYS SER GLU VAL GLY SEQRES 15 A 407 ASP ARG VAL GLU VAL VAL GLY GLY ASN VAL ALA THR ARG SEQRES 16 A 407 SER ALA ALA ALA ALA LEU VAL ASP ALA GLY ALA ASP ALA SEQRES 17 A 407 VAL LYS VAL GLY VAL GLY PRO GLY SER ILE CYS THR THR SEQRES 18 A 407 ARG VAL VAL ALA GLY VAL GLY ALA PRO GLN ILE THR ALA SEQRES 19 A 407 ILE LEU GLU ALA VAL ALA ALA CYS ARG PRO ALA GLY VAL SEQRES 20 A 407 PRO VAL ILE ALA ASP GLY GLY LEU GLN TYR SER GLY ASP SEQRES 21 A 407 ILE ALA LYS ALA LEU ALA ALA GLY ALA SER THR ALA MET SEQRES 22 A 407 LEU GLY SER LEU LEU ALA GLY THR ALA GLU ALA PRO GLY SEQRES 23 A 407 GLU LEU ILE PHE VAL ASN GLY LYS GLN TYR LYS SER TYR SEQRES 24 A 407 ARG GLY MET GLY SER LEU GLY ALA MET ARG GLY ARG GLY SEQRES 25 A 407 GLY ALA THR SER TYR SER LYS ASP ARG TYR PHE ALA ASP SEQRES 26 A 407 ASP ALA LEU SER GLU ASP LYS LEU VAL PRO GLU GLY ILE SEQRES 27 A 407 GLU GLY ARG VAL PRO PHE ARG GLY PRO LEU SER SER VAL SEQRES 28 A 407 ILE HIS GLN LEU THR GLY GLY LEU ARG ALA ALA MET GLY SEQRES 29 A 407 TYR THR GLY SER PRO THR ILE GLU VAL LEU GLN GLN ALA SEQRES 30 A 407 GLN PHE VAL ARG ILE THR PRO ALA GLY LEU LYS GLU SER SEQRES 31 A 407 HIS PRO HIS ASP VAL ALA MET THR VAL GLU ALA PRO ASN SEQRES 32 A 407 TYR TYR ALA ARG HET IMP A 601 23 HET 8KV A 602 25 HET FMT A 603 3 HET EDO A 604 4 HET FMT A 605 3 HET EDO A 606 4 HET EDO A 607 4 HET FMT A 608 3 HETNAM IMP INOSINIC ACID HETNAM 8KV N-{(1S)-1-[3-METHOXY-4-(1,3-OXAZOL-5-YL)PHENYL]ETHYL}- HETNAM 2 8KV N'-PHENYLUREA HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 IMP C10 H13 N4 O8 P FORMUL 3 8KV C19 H19 N3 O3 FORMUL 4 FMT 3(C H2 O2) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 10 HOH *159(H2 O) HELIX 1 AA1 THR A 46 ASP A 48 5 3 HELIX 2 AA2 GLU A 90 ALA A 100 1 11 HELIX 3 AA3 PRO A 111 ARG A 124 1 14 HELIX 4 AA4 GLY A 262 ALA A 275 1 14 HELIX 5 AA5 ASN A 289 GLY A 304 1 16 HELIX 6 AA6 THR A 316 ALA A 326 1 11 HELIX 7 AA7 THR A 342 ALA A 347 1 6 HELIX 8 AA8 PRO A 352 ARG A 365 1 14 HELIX 9 AA9 PRO A 366 GLY A 368 5 3 HELIX 10 AB1 TYR A 379 ALA A 389 1 11 HELIX 11 AB2 GLY A 397 GLY A 402 1 6 HELIX 12 AB3 SER A 426 ARG A 431 1 6 HELIX 13 AB4 PRO A 469 GLY A 489 1 21 HELIX 14 AB5 THR A 492 GLN A 497 1 6 HELIX 15 AB6 THR A 505 HIS A 513 1 9 SHEET 1 AA1 2 VAL A 50 LEU A 52 0 SHEET 2 AA1 2 PHE A 501 ARG A 503 -1 O VAL A 502 N LEU A 51 SHEET 1 AA2 2 SER A 68 GLN A 69 0 SHEET 2 AA2 2 ARG A 75 LEU A 76 -1 O LEU A 76 N SER A 68 SHEET 1 AA3 9 LEU A 80 SER A 82 0 SHEET 2 AA3 9 MET A 103 LEU A 106 1 O MET A 103 N SER A 82 SHEET 3 AA3 9 GLY A 256 VAL A 259 1 O GLY A 256 N LEU A 106 SHEET 4 AA3 9 VAL A 279 ASP A 283 1 O ASP A 283 N VAL A 259 SHEET 5 AA3 9 GLU A 308 VAL A 314 1 O VAL A 310 N VAL A 282 SHEET 6 AA3 9 ALA A 330 VAL A 333 1 O LYS A 332 N GLY A 311 SHEET 7 AA3 9 VAL A 371 ASP A 374 1 O ILE A 372 N VAL A 333 SHEET 8 AA3 9 THR A 393 LEU A 396 1 O MET A 395 N ALA A 373 SHEET 9 AA3 9 LEU A 80 SER A 82 1 N VAL A 81 O LEU A 396 SHEET 1 AA4 3 LEU A 410 VAL A 413 0 SHEET 2 AA4 3 LYS A 416 ARG A 422 -1 O TYR A 418 N ILE A 411 SHEET 3 AA4 3 GLU A 461 PRO A 465 -1 O GLY A 462 N TYR A 421 CISPEP 1 GLY A 312 ASN A 313 0 2.27 SITE 1 AC1 26 SER A 83 MET A 85 ASN A 313 GLY A 338 SITE 2 AC1 26 SER A 339 ILE A 340 CYS A 341 ASP A 374 SITE 3 AC1 26 GLY A 375 GLY A 376 MET A 395 GLY A 397 SITE 4 AC1 26 SER A 398 TYR A 421 GLY A 423 MET A 424 SITE 5 AC1 26 GLY A 425 GLU A 458 GLY A 459 8KV A 602 SITE 6 AC1 26 EDO A 607 HOH A 719 HOH A 749 HOH A 756 SITE 7 AC1 26 HOH A 775 HOH A 816 SITE 1 AC2 9 PRO A 61 MET A 424 GLY A 425 LEU A 455 SITE 2 AC2 9 VAL A 456 GLU A 458 TYR A 487 IMP A 601 SITE 3 AC2 9 FMT A 603 SITE 1 AC3 4 THR A 284 ALA A 285 8KV A 602 HOH A 758 SITE 1 AC4 8 LEU A 53 ALA A 315 ALA A 351 ALA A 356 SITE 2 AC4 8 GLU A 359 HOH A 710 HOH A 745 HOH A 807 SITE 1 AC5 3 ASP A 36 GLN A 498 HOH A 798 SITE 1 AC6 7 ALA A 56 SER A 57 ASP A 58 HIS A 288 SITE 2 AC6 7 ASN A 289 ARG A 290 LEU A 293 SITE 1 AC7 9 ALA A 285 ASN A 313 GLY A 334 VAL A 335 SITE 2 AC7 9 GLY A 336 CYS A 341 IMP A 601 HOH A 714 SITE 3 AC7 9 HOH A 787 SITE 1 AC8 5 ARG A 92 ALA A 404 GLU A 405 ALA A 406 SITE 2 AC8 5 HOH A 827 CRYST1 88.128 88.128 84.364 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011853 0.00000