HEADER OXIDOREDUCTASE 07-FEB-17 5UQD TITLE DPY-21 IN COMPLEX WITH FE(II) AND ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUMPY: SHORTER THAN WILD-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1210-1617; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: DPY-21, CELE_Y59A8B.1, Y59A8B.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS OXIDOREDUCTASE, JMJC, H4K20ME2 DEMETHYLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.BREJC,Q.BIAN,S.UZAWA,B.S.WHEELER,E.C.ANDERSON,D.S.KING, AUTHOR 2 P.J.KRANZUSCH,C.G.PRESTON,B.J.MEYER REVDAT 8 06-MAR-24 5UQD 1 REMARK REVDAT 7 17-MAR-21 5UQD 1 AUTHOR REVDAT 6 26-FEB-20 5UQD 1 REMARK REVDAT 5 01-JAN-20 5UQD 1 REMARK REVDAT 4 01-NOV-17 5UQD 1 REMARK REVDAT 3 04-OCT-17 5UQD 1 JRNL REVDAT 2 27-SEP-17 5UQD 1 REMARK REVDAT 1 13-SEP-17 5UQD 0 JRNL AUTH K.BREJC,Q.BIAN,S.UZAWA,B.S.WHEELER,E.C.ANDERSON,D.S.KING, JRNL AUTH 2 P.J.KRANZUSCH,C.G.PRESTON,B.J.MEYER JRNL TITL DYNAMIC CONTROL OF X CHROMOSOME CONFORMATION AND REPRESSION JRNL TITL 2 BY A HISTONE H4K20 DEMETHYLASE. JRNL REF CELL V. 171 85 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28867287 JRNL DOI 10.1016/J.CELL.2017.07.041 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8721 - 4.3330 1.00 2847 151 0.1690 0.1746 REMARK 3 2 4.3330 - 3.4396 1.00 2752 144 0.1440 0.1748 REMARK 3 3 3.4396 - 3.0050 1.00 2717 143 0.1607 0.1852 REMARK 3 4 3.0050 - 2.7303 1.00 2702 142 0.1678 0.2042 REMARK 3 5 2.7303 - 2.5346 1.00 2690 141 0.1598 0.1735 REMARK 3 6 2.5346 - 2.3852 1.00 2697 143 0.1575 0.2109 REMARK 3 7 2.3852 - 2.2657 1.00 2668 140 0.1560 0.1825 REMARK 3 8 2.2657 - 2.1671 1.00 2662 140 0.1488 0.2148 REMARK 3 9 2.1671 - 2.0837 1.00 2681 142 0.1542 0.2037 REMARK 3 10 2.0837 - 2.0118 0.99 2643 139 0.1597 0.2092 REMARK 3 11 2.0118 - 1.9489 0.99 2663 139 0.1676 0.2020 REMARK 3 12 1.9489 - 1.8932 0.99 2635 140 0.1995 0.2225 REMARK 3 13 1.8932 - 1.8433 0.99 2624 138 0.2133 0.2358 REMARK 3 14 1.8433 - 1.7983 0.96 2577 136 0.2579 0.3130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2799 REMARK 3 ANGLE : 1.205 3783 REMARK 3 CHIRALITY : 0.086 399 REMARK 3 PLANARITY : 0.009 497 REMARK 3 DIHEDRAL : 14.175 1703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1208 THROUGH 1237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7233 8.6413 17.9882 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.1686 REMARK 3 T33: 0.2350 T12: 0.0903 REMARK 3 T13: 0.0532 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 4.1664 L22: 4.1336 REMARK 3 L33: 2.4733 L12: -0.3543 REMARK 3 L13: -0.1004 L23: -1.1002 REMARK 3 S TENSOR REMARK 3 S11: -0.2178 S12: 0.1560 S13: -0.5031 REMARK 3 S21: -0.0578 S22: 0.0463 S23: 0.0585 REMARK 3 S31: 0.7266 S32: 0.0833 S33: 0.1573 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1238 THROUGH 1310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5287 16.2736 31.8055 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.1622 REMARK 3 T33: 0.1865 T12: 0.0598 REMARK 3 T13: 0.0225 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.5275 L22: 1.0664 REMARK 3 L33: 1.9090 L12: -0.1744 REMARK 3 L13: -0.0834 L23: 0.7269 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: -0.0507 S13: -0.1559 REMARK 3 S21: 0.1695 S22: 0.0423 S23: -0.0215 REMARK 3 S31: 0.5608 S32: 0.3257 S33: 0.0177 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1311 THROUGH 1342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8528 41.1627 50.0167 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.1541 REMARK 3 T33: 0.2140 T12: 0.0407 REMARK 3 T13: -0.0793 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 5.0865 L22: 3.8349 REMARK 3 L33: 0.7319 L12: -1.3903 REMARK 3 L13: 1.1809 L23: -0.2058 REMARK 3 S TENSOR REMARK 3 S11: -0.4065 S12: -0.5005 S13: 0.7293 REMARK 3 S21: -0.1390 S22: 0.0178 S23: -0.0849 REMARK 3 S31: -0.3393 S32: -0.1791 S33: 0.2610 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1343 THROUGH 1412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.3129 27.8615 42.7940 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.2711 REMARK 3 T33: 0.1452 T12: 0.0421 REMARK 3 T13: -0.0124 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.0665 L22: 2.1415 REMARK 3 L33: 2.3582 L12: -0.4880 REMARK 3 L13: 0.4704 L23: 0.7610 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.2252 S13: 0.1352 REMARK 3 S21: 0.1148 S22: 0.2390 S23: -0.4159 REMARK 3 S31: 0.1558 S32: 0.5382 S33: -0.0806 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1413 THROUGH 1523 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6897 32.0507 35.5572 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.1676 REMARK 3 T33: 0.1156 T12: 0.0085 REMARK 3 T13: -0.0275 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.1286 L22: 1.8648 REMARK 3 L33: 1.7844 L12: 0.2455 REMARK 3 L13: -0.0015 L23: 0.2492 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: -0.0948 S13: 0.1196 REMARK 3 S21: 0.0528 S22: 0.0382 S23: -0.0566 REMARK 3 S31: -0.1121 S32: 0.0957 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1524 THROUGH 1610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0022 32.5339 24.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1406 REMARK 3 T33: 0.1672 T12: -0.0318 REMARK 3 T13: 0.0042 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.4334 L22: 0.8129 REMARK 3 L33: 2.8466 L12: -0.0868 REMARK 3 L13: 0.0686 L23: -0.1334 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0505 S13: 0.2116 REMARK 3 S21: -0.0205 S22: 0.0405 S23: -0.1280 REMARK 3 S31: -0.2507 S32: 0.3245 S33: 0.0113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 43.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN HANGING DROPS REMARK 280 CONTAINING 200 NL DPY-21 (5 MG/ML) AND 200 NL WELL SOLUTION REMARK 280 CONTAINING 100 MM DL-MALIC ACID (PH 5.6) AND 25% (W/V) PEG 550 REMARK 280 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.41900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.41900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.94150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.94150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.41900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.94150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.41900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.94150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY SIZE EXCLUSION CHROMATOGRAPHY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1945 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1176 REMARK 465 LYS A 1177 REMARK 465 SER A 1178 REMARK 465 SER A 1179 REMARK 465 TRP A 1180 REMARK 465 SER A 1181 REMARK 465 HIS A 1182 REMARK 465 PRO A 1183 REMARK 465 GLN A 1184 REMARK 465 PHE A 1185 REMARK 465 GLU A 1186 REMARK 465 LYS A 1187 REMARK 465 GLY A 1188 REMARK 465 ALA A 1189 REMARK 465 MET A 1190 REMARK 465 THR A 1191 REMARK 465 GLY A 1192 REMARK 465 TRP A 1193 REMARK 465 SER A 1194 REMARK 465 HIS A 1195 REMARK 465 PRO A 1196 REMARK 465 GLN A 1197 REMARK 465 PHE A 1198 REMARK 465 GLU A 1199 REMARK 465 LYS A 1200 REMARK 465 GLU A 1201 REMARK 465 ASN A 1202 REMARK 465 LEU A 1203 REMARK 465 TYR A 1204 REMARK 465 PHE A 1205 REMARK 465 GLN A 1206 REMARK 465 SER A 1207 REMARK 465 THR A 1361 REMARK 465 LYS A 1362 REMARK 465 ASN A 1363 REMARK 465 GLU A 1364 REMARK 465 GLU A 1365 REMARK 465 ALA A 1366 REMARK 465 GLY A 1367 REMARK 465 GLY A 1368 REMARK 465 GLN A 1396 REMARK 465 GLY A 1397 REMARK 465 ILE A 1398 REMARK 465 LYS A 1399 REMARK 465 GLU A 1400 REMARK 465 ASP A 1401 REMARK 465 THR A 1420 REMARK 465 ASP A 1421 REMARK 465 GLY A 1422 REMARK 465 LYS A 1423 REMARK 465 ASN A 1424 REMARK 465 ARG A 1425 REMARK 465 SER A 1426 REMARK 465 THR A 1427 REMARK 465 GLU A 1428 REMARK 465 PRO A 1429 REMARK 465 ARG A 1430 REMARK 465 HIS A 1431 REMARK 465 PRO A 1432 REMARK 465 LEU A 1433 REMARK 465 ALA A 1434 REMARK 465 THR A 1435 REMARK 465 ARG A 1436 REMARK 465 GLY A 1437 REMARK 465 ASN A 1438 REMARK 465 ASP A 1439 REMARK 465 ARG A 1440 REMARK 465 ARG A 1441 REMARK 465 GLU A 1458 REMARK 465 SER A 1459 REMARK 465 THR A 1460 REMARK 465 GLU A 1461 REMARK 465 ASP A 1462 REMARK 465 ASP A 1463 REMARK 465 PRO A 1464 REMARK 465 THR A 1465 REMARK 465 THR A 1466 REMARK 465 THR A 1467 REMARK 465 THR A 1468 REMARK 465 THR A 1469 REMARK 465 THR A 1470 REMARK 465 THR A 1471 REMARK 465 THR A 1472 REMARK 465 THR A 1473 REMARK 465 THR A 1474 REMARK 465 SER A 1475 REMARK 465 SER A 1476 REMARK 465 SER A 1477 REMARK 465 SER A 1478 REMARK 465 SER A 1479 REMARK 465 SER A 1480 REMARK 465 SER A 1481 REMARK 465 LYS A 1482 REMARK 465 SER A 1483 REMARK 465 LYS A 1484 REMARK 465 LYS A 1485 REMARK 465 SER A 1486 REMARK 465 ALA A 1487 REMARK 465 LYS A 1488 REMARK 465 SER A 1489 REMARK 465 ASP A 1490 REMARK 465 PRO A 1491 REMARK 465 THR A 1492 REMARK 465 PHE A 1493 REMARK 465 ASP A 1510 REMARK 465 ALA A 1511 REMARK 465 ASN A 1512 REMARK 465 ASP A 1513 REMARK 465 ASP A 1514 REMARK 465 ASP A 1515 REMARK 465 GLU A 1516 REMARK 465 ARG A 1611 REMARK 465 HIS A 1612 REMARK 465 TYR A 1613 REMARK 465 TYR A 1614 REMARK 465 ASP A 1615 REMARK 465 VAL A 1616 REMARK 465 ASP A 1617 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1344 119.43 -164.66 REMARK 500 PHE A1370 -9.98 -51.54 REMARK 500 PHE A1382 -31.27 77.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1452 NE2 REMARK 620 2 ASP A1454 OD1 100.6 REMARK 620 3 HIS A1593 NE2 89.7 90.4 REMARK 620 4 AKG A1701 O1 166.6 90.0 98.5 REMARK 620 5 AKG A1701 O5 87.0 172.2 91.4 82.3 REMARK 620 6 HOH A1822 O 89.0 85.1 175.0 83.6 93.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 1704 DBREF 5UQD A 1210 1617 UNP Q9GRZ3 Q9GRZ3_CAEEL 1210 1617 SEQADV 5UQD MET A 1176 UNP Q9GRZ3 INITIATING METHIONINE SEQADV 5UQD LYS A 1177 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD SER A 1178 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD SER A 1179 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD TRP A 1180 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD SER A 1181 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD HIS A 1182 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD PRO A 1183 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLN A 1184 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD PHE A 1185 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLU A 1186 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD LYS A 1187 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLY A 1188 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD ALA A 1189 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD MET A 1190 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD THR A 1191 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLY A 1192 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD TRP A 1193 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD SER A 1194 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD HIS A 1195 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD PRO A 1196 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLN A 1197 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD PHE A 1198 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLU A 1199 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD LYS A 1200 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLU A 1201 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD ASN A 1202 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD LEU A 1203 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD TYR A 1204 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD PHE A 1205 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD GLN A 1206 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD SER A 1207 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD ASN A 1208 UNP Q9GRZ3 EXPRESSION TAG SEQADV 5UQD ALA A 1209 UNP Q9GRZ3 EXPRESSION TAG SEQRES 1 A 442 MET LYS SER SER TRP SER HIS PRO GLN PHE GLU LYS GLY SEQRES 2 A 442 ALA MET THR GLY TRP SER HIS PRO GLN PHE GLU LYS GLU SEQRES 3 A 442 ASN LEU TYR PHE GLN SER ASN ALA THR MET ARG ILE THR SEQRES 4 A 442 ASN ARG ASN LEU LYS MET LEU THR ARG GLN PHE ASP LEU SEQRES 5 A 442 PRO LYS MET SER SER ARG PHE ARG LYS PHE VAL ARG ILE SEQRES 6 A 442 ARG ARG HIS PRO ASN GLY MET ALA THR ILE ILE SER CYS SEQRES 7 A 442 ASP TYR ASN GLN ILE LYS GLN HIS LEU GLY PRO ASN GLU SEQRES 8 A 442 MET LYS HIS PHE GLU ARG GLN PHE VAL ARG LEU GLY PHE SEQRES 9 A 442 ALA GLU ASN ASN GLY VAL PRO LEU PHE ALA ILE GLY VAL SEQRES 10 A 442 MET GLU ASN ALA ALA GLU ALA LEU HIS ASP GLN PHE GLU SEQRES 11 A 442 TRP LEU ALA LYS ASN SER PRO ASN THR GLN VAL LYS VAL SEQRES 12 A 442 GLY SER LEU THR ASN LYS GLN PHE ILE GLU THR MET PRO SEQRES 13 A 442 MET LYS LYS TYR TYR GLU SER ALA MET GLU THR LEU ASP SEQRES 14 A 442 MET GLY THR PHE ARG PHE GLY PRO LEU MET SER LEU SER SEQRES 15 A 442 MET VAL GLY THR LYS ASN GLU GLU ALA GLY GLY ASN PHE SEQRES 16 A 442 LYS GLU MET LEU ASP ALA LEU ASN ALA ALA PRO PHE LEU SEQRES 17 A 442 GLY PRO ILE MET PRO TRP GLY ASP PHE SER GLU VAL GLN SEQRES 18 A 442 GLY ILE LYS GLU ASP THR SER ASP ASP GLY PRO ILE PHE SEQRES 19 A 442 TRP VAL ARG PRO GLY GLU GLN MET VAL PRO THR ASP GLY SEQRES 20 A 442 LYS ASN ARG SER THR GLU PRO ARG HIS PRO LEU ALA THR SEQRES 21 A 442 ARG GLY ASN ASP ARG ARG GLU THR ALA PHE ASN ASP ARG SEQRES 22 A 442 THR ASN ALA HIS ALA ASP GLN VAL ARG GLU SER THR GLU SEQRES 23 A 442 ASP ASP PRO THR THR THR THR THR THR THR THR THR THR SEQRES 24 A 442 SER SER SER SER SER SER SER LYS SER LYS LYS SER ALA SEQRES 25 A 442 LYS SER ASP PRO THR PHE VAL LYS SER THR ALA ALA VAL SEQRES 26 A 442 GLY VAL LEU GLN GLY ILE ARG ASN PRO ASP ALA ASN ASP SEQRES 27 A 442 ASP ASP GLU TYR TYR GLU ASP GLU ARG LYS ALA VAL LYS SEQRES 28 A 442 GLU VAL ILE VAL PHE ASP ALA HIS ASP LEU HIS LYS VAL SEQRES 29 A 442 ALA HIS HIS LEU ALA MET ASP LEU TYR GLU PRO PRO VAL SEQRES 30 A 442 SER GLN CYS HIS ARG TRP VAL ASP ASP ALA ILE LEU ASN SEQRES 31 A 442 THR MET ARG ARG GLU GLY ILE ARG TYR ALA LYS LEU GLU SEQRES 32 A 442 LEU HIS GLU ASN ASP MET TYR PHE LEU PRO ARG ASN VAL SEQRES 33 A 442 ILE HIS GLN PHE ARG THR VAL SER ALA CYS SER SER VAL SEQRES 34 A 442 ALA TRP HIS VAL ARG LEU ARG HIS TYR TYR ASP VAL ASP HET AKG A1701 10 HET FE2 A1702 1 HET PG0 A1703 8 HET PG0 A1704 8 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM FE2 FE (II) ION HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN PG0 PEG 6000 FORMUL 2 AKG C5 H6 O5 FORMUL 3 FE2 FE 2+ FORMUL 4 PG0 2(C5 H12 O3) FORMUL 6 HOH *254(H2 O) HELIX 1 AA1 ASN A 1208 ARG A 1223 1 16 HELIX 2 AA2 SER A 1231 LYS A 1236 1 6 HELIX 3 AA3 TYR A 1255 LYS A 1259 1 5 HELIX 4 AA4 GLY A 1263 PHE A 1279 1 17 HELIX 5 AA5 ASP A 1302 SER A 1311 1 10 HELIX 6 AA6 MET A 1332 THR A 1342 1 11 HELIX 7 AA7 PHE A 1370 ALA A 1379 1 10 HELIX 8 AA8 LEU A 1383 MET A 1387 5 5 HELIX 9 AA9 THR A 1402 GLY A 1406 5 5 HELIX 10 AB1 TYR A 1518 ARG A 1522 5 5 HELIX 11 AB2 ASP A 1535 LEU A 1543 1 9 HELIX 12 AB3 PRO A 1550 GLN A 1554 5 5 HELIX 13 AB4 ASP A 1560 ARG A 1569 1 10 SHEET 1 AA1 8 ARG A1239 ARG A1242 0 SHEET 2 AA1 8 THR A1249 ASP A1254 -1 O SER A1252 N ARG A1239 SHEET 3 AA1 8 ILE A1290 GLU A1294 1 O GLU A1294 N CYS A1253 SHEET 4 AA1 8 MET A1584 LEU A1587 -1 O MET A1584 N MET A1293 SHEET 5 AA1 8 ALA A1498 GLY A1505 -1 N ALA A1499 O LEU A1587 SHEET 6 AA1 8 CYS A1601 VAL A1608 -1 O SER A1602 N GLN A1504 SHEET 7 AA1 8 ILE A1408 ARG A1412 -1 N TRP A1410 O SER A1603 SHEET 8 AA1 8 LEU A1353 SER A1357 -1 N LEU A1356 O PHE A1409 SHEET 1 AA2 2 GLU A1281 ASN A1282 0 SHEET 2 AA2 2 VAL A1285 PRO A1286 -1 O VAL A1285 N ASN A1282 SHEET 1 AA3 2 GLN A1315 GLY A1319 0 SHEET 2 AA3 2 ILE A1327 PRO A1331 -1 O GLU A1328 N VAL A1318 SHEET 1 AA4 2 LEU A1343 ASP A1344 0 SHEET 2 AA4 2 THR A1347 PHE A1348 -1 O THR A1347 N ASP A1344 SHEET 1 AA5 2 GLN A1416 VAL A1418 0 SHEET 2 AA5 2 THR A1443 PHE A1445 -1 O THR A1443 N VAL A1418 SHEET 1 AA6 4 ARG A1448 HIS A1452 0 SHEET 2 AA6 4 HIS A1593 THR A1597 -1 O HIS A1593 N HIS A1452 SHEET 3 AA6 4 ALA A1524 PHE A1531 -1 N GLU A1527 O ARG A1596 SHEET 4 AA6 4 TYR A1574 HIS A1580 -1 O LEU A1577 N VAL A1528 SHEET 1 AA7 2 GLN A1455 VAL A1456 0 SHEET 2 AA7 2 LYS A1495 SER A1496 -1 O LYS A1495 N VAL A1456 LINK NE2 HIS A1452 FE FE2 A1702 1555 1555 2.17 LINK OD1 ASP A1454 FE FE2 A1702 1555 1555 2.18 LINK NE2 HIS A1593 FE FE2 A1702 1555 1555 2.13 LINK O1 AKG A1701 FE FE2 A1702 1555 1555 2.14 LINK O5 AKG A1701 FE FE2 A1702 1555 1555 2.31 LINK FE FE2 A1702 O HOH A1822 1555 1555 2.31 CISPEP 1 GLY A 1406 PRO A 1407 0 5.34 SITE 1 AC1 15 TRP A1410 THR A1449 HIS A1452 ASP A1454 SITE 2 AC1 15 ALA A1499 LYS A1526 TYR A1585 HIS A1593 SITE 3 AC1 15 PHE A1595 FE2 A1702 PG0 A1703 HOH A1801 SITE 4 AC1 15 HOH A1804 HOH A1822 HOH A1949 SITE 1 AC2 5 HIS A1452 ASP A1454 HIS A1593 AKG A1701 SITE 2 AC2 5 HOH A1822 SITE 1 AC3 8 ASP A1404 ASP A1405 ILE A1408 ASP A1454 SITE 2 AC3 8 TRP A1606 HIS A1607 AKG A1701 HOH A1822 SITE 1 AC4 4 HIS A1269 ARG A1272 GLN A1273 ARG A1276 CRYST1 87.625 97.883 98.838 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010118 0.00000