HEADER HYDROLASE 08-FEB-17 5UQJ TITLE STRUCTURE OF YEAST USB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: U6 SNRNA PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 71-290; COMPND 5 SYNONYM: U SIX BIOGENESIS PROTEIN 1; COMPND 6 EC: 3.1.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: USB1, YLR132C, L3127; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS U6 SNRNA 3' EXONUCLEASE USB1 2H PHOSPHOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.DIDYCHUK,E.J.MONTEMAYOR,S.E.BUTCHER REVDAT 5 06-MAR-24 5UQJ 1 REMARK REVDAT 4 01-JAN-20 5UQJ 1 REMARK REVDAT 3 27-FEB-19 5UQJ 1 JRNL REVDAT 2 13-SEP-17 5UQJ 1 REMARK REVDAT 1 16-AUG-17 5UQJ 0 JRNL AUTH A.L.DIDYCHUK,E.J.MONTEMAYOR,T.J.CARROCCI,A.T.DELAITSCH, JRNL AUTH 2 S.E.LUCARELLI,W.M.WESTLER,D.A.BROW,A.A.HOSKINS,S.E.BUTCHER JRNL TITL USB1 CONTROLS U6 SNRNP ASSEMBLY THROUGH EVOLUTIONARILY JRNL TITL 2 DIVERGENT CYCLIC PHOSPHODIESTERASE ACTIVITIES. JRNL REF NAT COMMUN V. 8 497 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28887445 JRNL DOI 10.1038/S41467-017-00484-W REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.680 REMARK 3 FREE R VALUE TEST SET COUNT : 3798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9358 - 5.3946 1.00 1713 136 0.2021 0.2160 REMARK 3 2 5.3946 - 4.2826 1.00 1719 147 0.1468 0.1845 REMARK 3 3 4.2826 - 3.7414 1.00 1681 139 0.1442 0.1630 REMARK 3 4 3.7414 - 3.3994 1.00 1701 148 0.1501 0.1898 REMARK 3 5 3.3994 - 3.1558 1.00 1685 142 0.1690 0.2198 REMARK 3 6 3.1558 - 2.9698 1.00 1689 147 0.1684 0.2214 REMARK 3 7 2.9698 - 2.8211 1.00 1718 141 0.1832 0.2568 REMARK 3 8 2.8211 - 2.6983 1.00 1709 139 0.1823 0.1879 REMARK 3 9 2.6983 - 2.5944 0.99 1675 143 0.1849 0.2549 REMARK 3 10 2.5944 - 2.5049 1.00 1704 141 0.1889 0.2201 REMARK 3 11 2.5049 - 2.4266 0.99 1688 141 0.1902 0.2378 REMARK 3 12 2.4266 - 2.3572 1.00 1695 141 0.1898 0.2700 REMARK 3 13 2.3572 - 2.2952 0.99 1708 142 0.1938 0.2181 REMARK 3 14 2.2952 - 2.2392 1.00 1681 134 0.1955 0.2418 REMARK 3 15 2.2392 - 2.1883 0.99 1698 143 0.2069 0.2347 REMARK 3 16 2.1883 - 2.1417 1.00 1713 141 0.2127 0.2836 REMARK 3 17 2.1417 - 2.0988 0.98 1642 136 0.2240 0.2730 REMARK 3 18 2.0988 - 2.0592 1.00 1732 143 0.2406 0.2934 REMARK 3 19 2.0592 - 2.0225 1.00 1660 141 0.2380 0.2930 REMARK 3 20 2.0225 - 1.9882 0.98 1678 141 0.2387 0.2833 REMARK 3 21 1.9882 - 1.9561 1.00 1714 142 0.2559 0.2612 REMARK 3 22 1.9561 - 1.9260 1.00 1656 135 0.2620 0.2709 REMARK 3 23 1.9260 - 1.8977 0.97 1673 143 0.2701 0.3243 REMARK 3 24 1.8977 - 1.8709 1.00 1735 136 0.2709 0.3320 REMARK 3 25 1.8709 - 1.8457 0.99 1650 141 0.2827 0.2790 REMARK 3 26 1.8457 - 1.8217 0.97 1685 138 0.3128 0.2641 REMARK 3 27 1.8217 - 1.7989 0.98 1663 137 0.3410 0.3848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1819 REMARK 3 ANGLE : 1.681 2467 REMARK 3 CHIRALITY : 0.087 266 REMARK 3 PLANARITY : 0.008 315 REMARK 3 DIHEDRAL : 14.719 682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.917 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 2.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 78.92500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.19000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.09500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 78.92500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.28500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.28500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.09500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 78.92500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.19000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 78.92500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 22.19000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 78.92500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 33.28500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 11.09500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.92500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 11.09500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 33.28500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 78.92500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 78.92500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 22.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -291.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 157.85000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 157.85000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.38000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 157.85000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 157.85000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 44.38000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 466 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 468 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 70 REMARK 465 MET A 71 REMARK 465 SER A 72 REMARK 465 GLN A 107 REMARK 465 GLU A 108 REMARK 465 TYR A 109 REMARK 465 THR A 110 REMARK 465 ASN A 111 REMARK 465 PRO A 112 REMARK 465 TYR A 113 REMARK 465 GLN A 114 REMARK 465 LEU A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 470 O HOH A 496 2.14 REMARK 500 OD1 ASN A 157 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 74 -167.05 -123.41 REMARK 500 ASN A 239 81.55 59.18 REMARK 500 PRO A 240 -78.33 -74.72 REMARK 500 SER A 241 133.42 124.20 REMARK 500 ALA A 266 61.25 -110.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 DBREF 5UQJ A 71 290 UNP Q12208 USB1_YEAST 71 290 SEQADV 5UQJ GLY A 70 UNP Q12208 EXPRESSION TAG SEQRES 1 A 221 GLY MET SER ARG PHE TRP ARG SER PHE THR TYR PHE GLU SEQRES 2 A 221 TRP ARG PRO THR PRO ALA ILE HIS ARG GLN LEU GLN LYS SEQRES 3 A 221 ILE ILE CYS LYS TYR LYS GLU THR PHE MET LYS GLN GLU SEQRES 4 A 221 TYR THR ASN PRO TYR GLN LEU VAL ASP PHE ASP PRO LEU SEQRES 5 A 221 PHE ILE SER HIS LEU GLY ALA PRO LYS PRO LEU HIS VAL SEQRES 6 A 221 SER LEU THR ARG SER LEU LEU PHE GLU THR GLU GLU GLN SEQRES 7 A 221 ARG HIS VAL PHE ILE GLN GLU MET ARG ASN GLY LEU ARG SEQRES 8 A 221 ASN ASN GLU ILE THR PRO PHE LYS LEU GLN ILE CYS SER SEQRES 9 A 221 TYR PRO LYS LEU TYR ILE SER GLU ARG ALA ASN THR LEU SEQRES 10 A 221 TYR LEU GLY LEU PRO VAL SER GLU CYS PRO ASN LYS ALA SEQRES 11 A 221 GLN ILE SER PRO PHE LYS THR ILE ILE ALA GLU ALA LEU SEQRES 12 A 221 GLN LYS SER GLY ILE SER ASN TYR GLN ASP LEU ILE VAL SEQRES 13 A 221 SER ARG GLN ASN LEU HIS VAL SER ILE ALA ILE ALA SER SEQRES 14 A 221 ASN PRO SER LYS ALA THR LEU LYS ARG TYR GLN GLN LEU SEQRES 15 A 221 ASN GLU THR MET GLY ALA LEU LEU LEU LEU ASN ASN ASP SEQRES 16 A 221 PHE ALA TYR LYS LEU GLU PHE LEU VAL ASN SER ILE TYR SEQRES 17 A 221 CYS ASP GLU ASN ARG HIS SER ILE ARG ILE PRO PHE ASN HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET GOL A 306 6 HET ACT A 307 4 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *116(H2 O) HELIX 1 AA1 THR A 86 LYS A 106 1 21 HELIX 2 AA2 THR A 144 ASN A 162 1 19 HELIX 3 AA3 SER A 193 SER A 215 1 23 HELIX 4 AA4 SER A 226 ASN A 229 5 4 HELIX 5 AA5 SER A 241 ARG A 247 1 7 HELIX 6 AA6 ARG A 247 ASN A 263 1 17 SHEET 1 AA1 2 TRP A 75 SER A 77 0 SHEET 2 AA1 2 LEU A 140 PHE A 142 -1 O LEU A 140 N SER A 77 SHEET 1 AA2 4 LEU A 132 SER A 135 0 SHEET 2 AA2 4 THR A 79 TRP A 83 -1 N TRP A 83 O LEU A 132 SHEET 3 AA2 4 SER A 275 CYS A 278 -1 O TYR A 277 N TYR A 80 SHEET 4 AA2 4 ILE A 285 PRO A 288 -1 O ILE A 287 N ILE A 276 SHEET 1 AA3 4 ASP A 117 PRO A 120 0 SHEET 2 AA3 4 HIS A 231 SER A 238 -1 O SER A 238 N ASP A 117 SHEET 3 AA3 4 LEU A 186 PRO A 191 -1 N LEU A 188 O ILE A 234 SHEET 4 AA3 4 LYS A 176 ILE A 179 -1 N LYS A 176 O GLY A 189 SHEET 1 AA4 2 PHE A 167 ILE A 171 0 SHEET 2 AA4 2 LEU A 269 VAL A 273 -1 O VAL A 273 N PHE A 167 SITE 1 AC1 10 ARG A 73 SER A 135 TYR A 187 HIS A 231 SITE 2 AC1 10 SER A 233 HOH A 420 HOH A 438 HOH A 443 SITE 3 AC1 10 HOH A 451 HOH A 464 SITE 1 AC2 9 ARG A 76 SER A 180 ARG A 182 ALA A 183 SITE 2 AC2 9 ASN A 184 THR A 185 HOH A 426 HOH A 449 SITE 3 AC2 9 HOH A 462 SITE 1 AC3 6 ARG A 73 PHE A 74 ARG A 76 TYR A 187 SITE 2 AC3 6 HOH A 408 HOH A 432 SITE 1 AC4 7 LYS A 205 SER A 226 ARG A 227 GLN A 228 SITE 2 AC4 7 HOH A 403 HOH A 414 HOH A 418 SITE 1 AC5 3 ARG A 156 ARG A 160 HOH A 436 SITE 1 AC6 8 TRP A 75 SER A 124 HIS A 125 LYS A 130 SITE 2 AC6 8 ARG A 282 HIS A 283 ILE A 285 HOH A 430 SITE 1 AC7 8 LEU A 272 VAL A 273 ASN A 274 SER A 275 SITE 2 AC7 8 TYR A 277 ARG A 286 HOH A 454 HOH A 455 CRYST1 157.850 157.850 44.380 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006335 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022533 0.00000