HEADER HYDROLASE 13-FEB-17 5US4 TITLE CRYSTAL STRUCTURE OF HUMAN KRAS G12D MUTANT IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2, KI-RAS, C-K-RAS, C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS KRAS, GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TRAN,A.KAPLAN,B.R.STOCKWELL,L.TONG REVDAT 4 06-MAR-24 5US4 1 LINK REVDAT 3 07-MAR-18 5US4 1 REMARK REVDAT 2 27-SEP-17 5US4 1 REMARK REVDAT 1 22-MAR-17 5US4 0 JRNL AUTH M.E.WELSCH,A.KAPLAN,J.M.CHAMBERS,M.E.STOKES,P.H.BOS,A.ZASK, JRNL AUTH 2 Y.ZHANG,M.SANCHEZ-MARTIN,M.A.BADGLEY,C.S.HUANG,T.H.TRAN, JRNL AUTH 3 H.AKKIRAJU,L.M.BROWN,R.NANDAKUMAR,S.CREMERS,W.S.YANG,L.TONG, JRNL AUTH 4 K.P.OLIVE,A.FERRANDO,B.R.STOCKWELL JRNL TITL MULTIVALENT SMALL-MOLECULE PAN-RAS INHIBITORS. JRNL REF CELL V. 168 878 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28235199 JRNL DOI 10.1016/J.CELL.2017.02.006 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1685 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 33635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5331 - 4.1862 0.88 2449 135 0.1544 0.1742 REMARK 3 2 4.1862 - 3.3233 0.92 2547 134 0.1438 0.1943 REMARK 3 3 3.3233 - 2.9034 0.94 2611 145 0.1646 0.1825 REMARK 3 4 2.9034 - 2.6380 0.95 2666 129 0.1814 0.2059 REMARK 3 5 2.6380 - 2.4489 0.96 2690 136 0.1731 0.2172 REMARK 3 6 2.4489 - 2.3046 0.97 2677 128 0.1660 0.1914 REMARK 3 7 2.3046 - 2.1892 0.97 2674 147 0.1539 0.1962 REMARK 3 8 2.1892 - 2.0939 0.98 2765 151 0.1621 0.1940 REMARK 3 9 2.0939 - 2.0133 0.98 2712 134 0.1685 0.2166 REMARK 3 10 2.0133 - 1.9438 0.99 2730 163 0.1732 0.2620 REMARK 3 11 1.9438 - 1.8830 0.99 2745 144 0.1846 0.2364 REMARK 3 12 1.8830 - 1.8292 0.96 2682 141 0.2115 0.2610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2719 REMARK 3 ANGLE : 1.791 3673 REMARK 3 CHIRALITY : 0.262 418 REMARK 3 PLANARITY : 0.008 464 REMARK 3 DIHEDRAL : 16.714 1031 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -22.0053 38.1037 -11.9575 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.1023 REMARK 3 T33: 0.1149 T12: 0.0028 REMARK 3 T13: -0.0162 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.1286 L22: 0.7222 REMARK 3 L33: 0.6493 L12: 0.3251 REMARK 3 L13: -0.3917 L23: -0.2345 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0101 S13: -0.0178 REMARK 3 S21: 0.0028 S22: 0.0056 S23: -0.0102 REMARK 3 S31: 0.0037 S32: 0.0045 S33: -0.0145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5US4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33643 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM PHOSPHATE DIBASIC, 20% REMARK 280 W/V PEG3350, PH 9.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.91100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.08408 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.45067 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 46.91100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 27.08408 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.45067 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 46.91100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 27.08408 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.45067 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.16816 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.90133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.16816 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.90133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.16816 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.90133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 12 O HOH B 301 1.81 REMARK 500 OD1 ASP A 12 O HOH A 301 1.82 REMARK 500 O HOH A 322 O HOH A 409 2.14 REMARK 500 OD1 ASP B 108 O HOH B 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 104 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 58.30 -142.41 REMARK 500 ASP A 33 115.36 -37.49 REMARK 500 ARG A 149 -1.55 72.25 REMARK 500 ASP B 33 114.78 -38.27 REMARK 500 ASP B 108 79.19 -112.80 REMARK 500 ARG B 149 -1.63 72.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 92.3 REMARK 620 3 HOH A 310 O 173.6 88.7 REMARK 620 4 HOH A 312 O 94.7 84.8 91.6 REMARK 620 5 HOH A 327 O 84.8 96.8 88.9 178.4 REMARK 620 6 HOH A 338 O 90.6 172.7 89.2 88.3 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 201 O2B 92.4 REMARK 620 3 HOH B 314 O 174.4 88.1 REMARK 620 4 HOH B 324 O 91.1 172.7 89.0 REMARK 620 5 HOH B 333 O 84.7 97.2 89.7 89.5 REMARK 620 6 HOH B 344 O 93.7 84.9 91.9 88.5 177.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UQW RELATED DB: PDB REMARK 900 RELATED ID: 5USJ RELATED DB: PDB DBREF 5US4 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 5US4 B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 5US4 MET A -19 UNP P01116 EXPRESSION TAG SEQADV 5US4 GLY A -18 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER A -17 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER A -16 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A -15 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A -14 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A -13 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A -12 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A -11 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A -10 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER A -9 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER A -8 UNP P01116 EXPRESSION TAG SEQADV 5US4 GLY A -7 UNP P01116 EXPRESSION TAG SEQADV 5US4 LEU A -6 UNP P01116 EXPRESSION TAG SEQADV 5US4 VAL A -5 UNP P01116 EXPRESSION TAG SEQADV 5US4 PRO A -4 UNP P01116 EXPRESSION TAG SEQADV 5US4 ARG A -3 UNP P01116 EXPRESSION TAG SEQADV 5US4 GLY A -2 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER A -1 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS A 0 UNP P01116 EXPRESSION TAG SEQADV 5US4 ASP A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 5US4 MET B -19 UNP P01116 EXPRESSION TAG SEQADV 5US4 GLY B -18 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER B -17 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER B -16 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B -15 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B -14 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B -13 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B -12 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B -11 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B -10 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER B -9 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER B -8 UNP P01116 EXPRESSION TAG SEQADV 5US4 GLY B -7 UNP P01116 EXPRESSION TAG SEQADV 5US4 LEU B -6 UNP P01116 EXPRESSION TAG SEQADV 5US4 VAL B -5 UNP P01116 EXPRESSION TAG SEQADV 5US4 PRO B -4 UNP P01116 EXPRESSION TAG SEQADV 5US4 ARG B -3 UNP P01116 EXPRESSION TAG SEQADV 5US4 GLY B -2 UNP P01116 EXPRESSION TAG SEQADV 5US4 SER B -1 UNP P01116 EXPRESSION TAG SEQADV 5US4 HIS B 0 UNP P01116 EXPRESSION TAG SEQADV 5US4 ASP B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 189 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 189 LEU VAL PRO ARG GLY SER HIS MET THR GLU TYR LYS LEU SEQRES 3 A 189 VAL VAL VAL GLY ALA ASP GLY VAL GLY LYS SER ALA LEU SEQRES 4 A 189 THR ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR SEQRES 5 A 189 ASP PRO THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL SEQRES 6 A 189 ILE ASP GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR SEQRES 7 A 189 ALA GLY GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR SEQRES 8 A 189 MET ARG THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE SEQRES 9 A 189 ASN ASN THR LYS SER PHE GLU ASP ILE HIS HIS TYR ARG SEQRES 10 A 189 GLU GLN ILE LYS ARG VAL LYS ASP SER GLU ASP VAL PRO SEQRES 11 A 189 MET VAL LEU VAL GLY ASN LYS CYS ASP LEU PRO SER ARG SEQRES 12 A 189 THR VAL ASP THR LYS GLN ALA GLN ASP LEU ALA ARG SER SEQRES 13 A 189 TYR GLY ILE PRO PHE ILE GLU THR SER ALA LYS THR ARG SEQRES 14 A 189 GLN GLY VAL ASP ASP ALA PHE TYR THR LEU VAL ARG GLU SEQRES 15 A 189 ILE ARG LYS HIS LYS GLU LYS SEQRES 1 B 189 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 189 LEU VAL PRO ARG GLY SER HIS MET THR GLU TYR LYS LEU SEQRES 3 B 189 VAL VAL VAL GLY ALA ASP GLY VAL GLY LYS SER ALA LEU SEQRES 4 B 189 THR ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR SEQRES 5 B 189 ASP PRO THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL SEQRES 6 B 189 ILE ASP GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR SEQRES 7 B 189 ALA GLY GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR SEQRES 8 B 189 MET ARG THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE SEQRES 9 B 189 ASN ASN THR LYS SER PHE GLU ASP ILE HIS HIS TYR ARG SEQRES 10 B 189 GLU GLN ILE LYS ARG VAL LYS ASP SER GLU ASP VAL PRO SEQRES 11 B 189 MET VAL LEU VAL GLY ASN LYS CYS ASP LEU PRO SER ARG SEQRES 12 B 189 THR VAL ASP THR LYS GLN ALA GLN ASP LEU ALA ARG SER SEQRES 13 B 189 TYR GLY ILE PRO PHE ILE GLU THR SER ALA LYS THR ARG SEQRES 14 B 189 GLN GLY VAL ASP ASP ALA PHE TYR THR LEU VAL ARG GLU SEQRES 15 B 189 ILE ARG LYS HIS LYS GLU LYS HET GDP A 201 28 HET MG A 202 1 HET GOL A 203 6 HET GDP B 201 28 HET MG B 202 1 HET GOL B 203 6 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *239(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ALA A 66 GLY A 75 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ARG B 68 GLY B 75 1 8 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 AA2 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.12 LINK O2B GDP A 201 MG MG A 202 1555 1555 2.14 LINK MG MG A 202 O HOH A 310 1555 1555 2.18 LINK MG MG A 202 O HOH A 312 1555 1555 2.17 LINK MG MG A 202 O HOH A 327 1555 1555 2.16 LINK MG MG A 202 O HOH A 338 1555 1555 2.15 LINK OG SER B 17 MG MG B 202 1555 1555 2.12 LINK O2B GDP B 201 MG MG B 202 1555 1555 2.10 LINK MG MG B 202 O HOH B 314 1555 1555 2.24 LINK MG MG B 202 O HOH B 324 1555 1555 2.18 LINK MG MG B 202 O HOH B 333 1555 1555 2.14 LINK MG MG B 202 O HOH B 344 1555 1555 2.19 SITE 1 AC1 22 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 22 SER A 17 ALA A 18 PHE A 28 ASP A 30 SITE 3 AC1 22 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 4 AC1 22 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 5 AC1 22 HOH A 310 HOH A 312 HOH A 324 HOH A 344 SITE 6 AC1 22 HOH A 379 HOH A 403 SITE 1 AC2 6 SER A 17 GDP A 201 HOH A 310 HOH A 312 SITE 2 AC2 6 HOH A 327 HOH A 338 SITE 1 AC3 7 ASN A 85 GLU A 91 LEU A 120 PRO A 121 SITE 2 AC3 7 SER A 122 LEU A 133 HOH A 340 SITE 1 AC4 22 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC4 22 SER B 17 ALA B 18 PHE B 28 ASP B 30 SITE 3 AC4 22 ASN B 116 LYS B 117 ASP B 119 LEU B 120 SITE 4 AC4 22 SER B 145 ALA B 146 LYS B 147 MG B 202 SITE 5 AC4 22 HOH B 314 HOH B 322 HOH B 343 HOH B 344 SITE 6 AC4 22 HOH B 372 HOH B 394 SITE 1 AC5 6 SER B 17 GDP B 201 HOH B 314 HOH B 324 SITE 2 AC5 6 HOH B 333 HOH B 344 SITE 1 AC6 6 ASN B 85 GLU B 91 PRO B 121 SER B 122 SITE 2 AC6 6 LEU B 133 HOH B 328 CRYST1 93.822 93.822 121.352 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010658 0.006154 0.000000 0.00000 SCALE2 0.000000 0.012307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008240 0.00000