HEADER HYDROLASE/HYDROLASE INHIBITOR 17-FEB-17 5UV3 TITLE KAPOSI'S SARCOMA HERPESVIRUS PROTEASE IN COMPLEX WITH ALLOSTERIC TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 17; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 23-215; COMPND 5 SYNONYM: ORF17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_COMMON: HHV-8; SOURCE 4 ORGANISM_TAXID: 37296; SOURCE 5 GENE: ORF17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE HYDROLASE, VIRAL PROTEIN, CAPSID MATURATION, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.M.ACKER,J.GABLE,M.-F.BOHN,C.S.CRAIK REVDAT 2 04-OCT-23 5UV3 1 REMARK REVDAT 1 29-MAR-17 5UV3 0 JRNL AUTH T.M.ACKER,C.S.CRAIK,M.-F.BOHN JRNL TITL KAPOSI'S SARCOMA HERPESVIRUS PROTEASE IN COMPLEX WITH JRNL TITL 2 ALLOSTERIC INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10PRE_2100 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.2082 - 5.3789 1.00 2571 180 0.2024 0.2106 REMARK 3 2 5.3789 - 4.2697 1.00 2595 143 0.1568 0.1643 REMARK 3 3 4.2697 - 3.7301 1.00 2582 148 0.1593 0.1823 REMARK 3 4 3.7301 - 3.3890 1.00 2582 140 0.1731 0.1925 REMARK 3 5 3.3890 - 3.1461 1.00 2658 95 0.1934 0.2350 REMARK 3 6 3.1461 - 2.9607 1.00 2615 121 0.2085 0.2310 REMARK 3 7 2.9607 - 2.8124 1.00 2577 132 0.2072 0.3119 REMARK 3 8 2.8124 - 2.6900 1.00 2613 149 0.2138 0.2887 REMARK 3 9 2.6900 - 2.5864 1.00 2574 162 0.2186 0.2508 REMARK 3 10 2.5864 - 2.4972 1.00 2578 159 0.2125 0.2535 REMARK 3 11 2.4972 - 2.4191 1.00 2566 158 0.2108 0.2662 REMARK 3 12 2.4191 - 2.3499 1.00 2594 108 0.2081 0.2530 REMARK 3 13 2.3499 - 2.2881 1.00 2628 122 0.2289 0.2404 REMARK 3 14 2.2881 - 2.2322 1.00 2570 146 0.2263 0.3154 REMARK 3 15 2.2322 - 2.1815 0.99 2625 119 0.2378 0.3011 REMARK 3 16 2.1815 - 2.1351 1.00 2602 112 0.2442 0.3040 REMARK 3 17 2.1351 - 2.0923 0.99 2561 148 0.2361 0.2770 REMARK 3 18 2.0923 - 2.0529 0.99 2527 160 0.2545 0.3310 REMARK 3 19 2.0529 - 2.0162 0.99 2570 157 0.2590 0.3402 REMARK 3 20 2.0162 - 1.9820 0.98 2572 118 0.2721 0.3261 REMARK 3 21 1.9820 - 1.9500 0.98 2548 137 0.3001 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3016 REMARK 3 ANGLE : 1.792 4154 REMARK 3 CHIRALITY : 0.098 481 REMARK 3 PLANARITY : 0.012 527 REMARK 3 DIHEDRAL : 18.043 1057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 61.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.24300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX PHENIX 1.8.4 PHASER 2.1 REMARK 200 STARTING MODEL: 3NJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH 8.0, 0.42M REMARK 280 NAH2PO4/1.68M K2HPO4, 0.2M KCL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.66300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.91400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.49850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.66300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.91400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.49850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.66300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.91400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.49850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.66300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.91400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.49850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 123 REMARK 465 SER B 124 REMARK 465 GLN B 125 REMARK 465 THR B 126 REMARK 465 PRO B 127 REMARK 465 SER B 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 HIS A 88 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 GLN A 125 CG CD OE1 NE2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 176 CG1 CG2 REMARK 470 SER A 177 OG REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 181 CG CD1 CD2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 THR A 195 OG1 CG2 REMARK 470 LEU A 196 CG CD1 CD2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 ASN B 96 CG OD1 ND2 REMARK 470 LEU B 97 CG CD1 CD2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 470 ARG B 180 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 VAL B 190 CG1 CG2 REMARK 470 SER B 191 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 303 O HOH A 361 1.25 REMARK 500 O HOH B 404 O HOH B 415 1.81 REMARK 500 O SER B 117 O HOH B 301 1.82 REMARK 500 O HOH A 390 O HOH B 355 1.84 REMARK 500 O HOH A 339 O HOH A 387 1.84 REMARK 500 O VAL B 94 O HOH B 302 1.85 REMARK 500 N ASN B 96 O HOH B 303 1.86 REMARK 500 N HIS A 175 O HOH A 301 1.90 REMARK 500 O HOH B 362 O HOH B 410 1.90 REMARK 500 O HOH B 416 O HOH B 419 1.94 REMARK 500 O ALA A 170 O HOH A 302 1.95 REMARK 500 O HOH A 332 O HOH A 355 2.04 REMARK 500 O PRO A 48 O HOH A 303 2.06 REMARK 500 O HOH B 347 O HOH B 375 2.06 REMARK 500 OG SER B 159 O HOH B 304 2.09 REMARK 500 O HOH A 329 O HOH A 396 2.11 REMARK 500 N GLU B 49 O HOH B 305 2.11 REMARK 500 O HOH B 306 O HOH B 311 2.11 REMARK 500 O HOH A 407 O HOH A 408 2.11 REMARK 500 OE1 GLU A 104 O HOH A 304 2.12 REMARK 500 N VAL A 176 O HOH A 301 2.12 REMARK 500 O ILE A 172 O HOH A 301 2.12 REMARK 500 OE2 GLU A 100 O HOH A 305 2.14 REMARK 500 O HIS A 175 O HOH A 306 2.15 REMARK 500 OG SER A 128 O HOH A 307 2.15 REMARK 500 O GLN A 174 OG SER A 178 2.15 REMARK 500 O HOH A 393 O HOH B 383 2.15 REMARK 500 N TRP A 156 O HOH A 308 2.17 REMARK 500 N PRO A 48 O HOH A 309 2.17 REMARK 500 OG1 THR A 37 NE2 HIS A 175 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 349 O HOH B 409 8575 1.57 REMARK 500 O HOH B 406 O HOH B 426 2785 1.95 REMARK 500 CB HIS A 88 O HOH B 404 8575 1.98 REMARK 500 O HOH B 349 O HOH B 368 3756 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 23 CA - CB - CG ANGL. DEV. = 22.7 DEGREES REMARK 500 LEU A 23 CB - CG - CD2 ANGL. DEV. = -14.7 DEGREES REMARK 500 GLU A 122 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU B 20 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 GLU B 20 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO B 35 C - N - CD ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG B 82 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 LYS B 99 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 9.70 59.49 REMARK 500 GLU A 100 60.46 61.70 REMARK 500 GLN A 125 -136.53 -84.55 REMARK 500 ARG A 143 -83.03 -133.92 REMARK 500 GLU B 20 105.26 106.18 REMARK 500 SER B 62 -126.36 54.41 REMARK 500 PRO B 98 -157.03 -89.58 REMARK 500 GLU B 100 38.43 129.10 REMARK 500 PRO B 120 14.64 -57.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 408 DISTANCE = 6.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8N4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8N4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8N4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UR3 RELATED DB: PDB REMARK 900 RELATED ID: 5UTE RELATED DB: PDB REMARK 900 RELATED ID: 5UTN RELATED DB: PDB REMARK 900 RELATED ID: 5UVP RELATED DB: PDB DBREF 5UV3 A 4 196 UNP O40922 O40922_HHV8 23 215 DBREF 5UV3 B 4 196 UNP O40922 O40922_HHV8 23 215 SEQRES 1 A 193 GLY LEU TYR VAL GLY GLY PHE VAL ASP VAL VAL SER CYS SEQRES 2 A 193 PRO LYS LEU GLU GLN GLU LEU TYR LEU ASP PRO ASP GLN SEQRES 3 A 193 VAL THR ASP TYR LEU PRO VAL THR GLU PRO LEU PRO ILE SEQRES 4 A 193 THR ILE GLU HIS LEU PRO GLU THR GLU VAL GLY TRP THR SEQRES 5 A 193 LEU GLY LEU PHE GLN VAL SER HIS GLY ILE PHE CYS THR SEQRES 6 A 193 GLY ALA ILE THR SER PRO ALA PHE LEU GLU LEU ALA SER SEQRES 7 A 193 ARG LEU ALA ASP THR SER HIS VAL ALA ARG ALA PRO VAL SEQRES 8 A 193 LYS ASN LEU PRO LYS GLU PRO LEU LEU GLU ILE LEU HIS SEQRES 9 A 193 THR TRP LEU PRO GLY LEU SER LEU SER SER ILE HIS PRO SEQRES 10 A 193 ARG GLU LEU SER GLN THR PRO SER GLY PRO VAL PHE GLN SEQRES 11 A 193 HIS VAL SER LEU CYS ALA LEU GLY ARG ARG ARG GLY THR SEQRES 12 A 193 VAL ALA VAL TYR GLY HIS ASP ALA GLU TRP VAL VAL SER SEQRES 13 A 193 ARG PHE SER SER VAL SER LYS SER GLU ARG ALA HIS ILE SEQRES 14 A 193 LEU GLN HIS VAL SER SER CYS ARG LEU GLU ASP LEU SER SEQRES 15 A 193 THR PRO ASN PHE VAL SER PRO LEU GLU THR LEU SEQRES 1 B 193 GLY LEU TYR VAL GLY GLY PHE VAL ASP VAL VAL SER CYS SEQRES 2 B 193 PRO LYS LEU GLU GLN GLU LEU TYR LEU ASP PRO ASP GLN SEQRES 3 B 193 VAL THR ASP TYR LEU PRO VAL THR GLU PRO LEU PRO ILE SEQRES 4 B 193 THR ILE GLU HIS LEU PRO GLU THR GLU VAL GLY TRP THR SEQRES 5 B 193 LEU GLY LEU PHE GLN VAL SER HIS GLY ILE PHE CYS THR SEQRES 6 B 193 GLY ALA ILE THR SER PRO ALA PHE LEU GLU LEU ALA SER SEQRES 7 B 193 ARG LEU ALA ASP THR SER HIS VAL ALA ARG ALA PRO VAL SEQRES 8 B 193 LYS ASN LEU PRO LYS GLU PRO LEU LEU GLU ILE LEU HIS SEQRES 9 B 193 THR TRP LEU PRO GLY LEU SER LEU SER SER ILE HIS PRO SEQRES 10 B 193 ARG GLU LEU SER GLN THR PRO SER GLY PRO VAL PHE GLN SEQRES 11 B 193 HIS VAL SER LEU CYS ALA LEU GLY ARG ARG ARG GLY THR SEQRES 12 B 193 VAL ALA VAL TYR GLY HIS ASP ALA GLU TRP VAL VAL SER SEQRES 13 B 193 ARG PHE SER SER VAL SER LYS SER GLU ARG ALA HIS ILE SEQRES 14 B 193 LEU GLN HIS VAL SER SER CYS ARG LEU GLU ASP LEU SER SEQRES 15 B 193 THR PRO ASN PHE VAL SER PRO LEU GLU THR LEU HET 8N4 A 201 37 HET 8N4 A 202 37 HET 8N4 B 201 37 HETNAM 8N4 4-{[6-(CYCLOHEXYLMETHYL)PYRIDINE-2-CARBONYL]AMINO}-3- HETNAM 2 8N4 {[3-(TRIFLUOROMETHOXY)PHENYL]AMINO}BENZOIC ACID FORMUL 3 8N4 3(C27 H26 F3 N3 O4) FORMUL 6 HOH *241(H2 O) HELIX 1 AA1 ASP A 26 LEU A 34 5 9 HELIX 2 AA2 SER A 73 SER A 87 1 15 HELIX 3 AA3 SER A 87 ALA A 92 1 6 HELIX 4 AA4 GLU A 100 LEU A 110 1 11 HELIX 5 AA5 HIS A 119 GLN A 125 1 7 HELIX 6 AA6 ASP A 153 SER A 159 1 7 HELIX 7 AA7 SER A 165 ALA A 170 1 6 HELIX 8 AA8 ILE A 172 SER A 177 1 6 HELIX 9 AA9 ARG A 180 LEU A 184 5 5 HELIX 10 AB1 ASP B 26 LEU B 34 5 9 HELIX 11 AB2 SER B 73 SER B 87 1 15 HELIX 12 AB3 SER B 87 ALA B 92 1 6 HELIX 13 AB4 GLU B 100 LEU B 110 1 11 HELIX 14 AB5 ASP B 153 SER B 159 1 7 HELIX 15 AB6 SER B 165 SER B 178 1 14 HELIX 16 AB7 ARG B 180 LEU B 184 5 5 SHEET 1 AA1 9 LEU A 23 LEU A 25 0 SHEET 2 AA1 9 ASP A 12 SER A 15 -1 N VAL A 13 O LEU A 25 SHEET 3 AA1 9 GLY A 112 SER A 117 1 O LEU A 115 N ASP A 12 SHEET 4 AA1 9 PHE A 132 CYS A 138 -1 O CYS A 138 N GLY A 112 SHEET 5 AA1 9 PRO A 41 ILE A 44 1 N THR A 43 O LEU A 137 SHEET 6 AA1 9 GLY A 53 VAL A 61 -1 O GLY A 53 N ILE A 42 SHEET 7 AA1 9 GLY A 64 ILE A 71 -1 O THR A 68 N LEU A 56 SHEET 8 AA1 9 LEU A 5 PHE A 10 -1 N GLY A 9 O CYS A 67 SHEET 9 AA1 9 VAL A 149 GLY A 151 -1 O GLY A 151 N TYR A 6 SHEET 1 AA2 9 LEU B 23 LEU B 25 0 SHEET 2 AA2 9 ASP B 12 SER B 15 -1 N VAL B 13 O LEU B 25 SHEET 3 AA2 9 GLY B 112 SER B 117 1 O LEU B 115 N ASP B 12 SHEET 4 AA2 9 PHE B 132 CYS B 138 -1 O SER B 136 N SER B 114 SHEET 5 AA2 9 PRO B 41 ILE B 44 1 N THR B 43 O LEU B 137 SHEET 6 AA2 9 GLY B 53 VAL B 61 -1 O GLY B 53 N ILE B 42 SHEET 7 AA2 9 GLY B 64 ILE B 71 -1 O THR B 68 N LEU B 56 SHEET 8 AA2 9 LEU B 5 PHE B 10 -1 N LEU B 5 O ILE B 71 SHEET 9 AA2 9 VAL B 149 GLY B 151 -1 O GLY B 151 N TYR B 6 CISPEP 1 LEU A 34 PRO A 35 0 3.60 CISPEP 2 LEU B 19 GLU B 20 0 11.50 CISPEP 3 LEU B 34 PRO B 35 0 -0.27 SITE 1 AC1 14 ILE A 44 PHE A 76 LEU A 79 LEU A 83 SITE 2 AC1 14 ILE A 105 TRP A 109 PHE A 189 PRO A 192 SITE 3 AC1 14 8N4 A 202 HOH A 312 LEU B 47 PRO B 192 SITE 4 AC1 14 LEU B 193 8N4 B 201 SITE 1 AC2 10 ARG A 82 LEU A 83 SER A 87 TRP A 109 SITE 2 AC2 10 LEU A 193 8N4 A 201 HOH A 316 HOH A 349 SITE 3 AC2 10 LEU B 140 8N4 B 201 SITE 1 AC3 19 TRP A 109 8N4 A 201 8N4 A 202 ILE B 44 SITE 2 AC3 19 LEU B 47 THR B 50 LEU B 79 LEU B 83 SITE 3 AC3 19 ALA B 90 TRP B 109 LEU B 110 PHE B 189 SITE 4 AC3 19 SER B 191 PRO B 192 LEU B 193 GLU B 194 SITE 5 AC3 19 THR B 195 HOH B 331 HOH B 352 CRYST1 71.326 95.828 118.997 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008404 0.00000