HEADER OXIDOREDUCTASE 21-FEB-17 5UWY TITLE THE CRYSTAL STRUCTURE OF THIOREDOXIN REDUCTASE FROM STREPTOCOCCUS TITLE 2 PYOGENES MGAS5005 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: TRXB_2, ERS445054_01550; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS THIOREDOXIN REDUCTASE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-DEC-19 5UWY 1 REMARK REVDAT 2 20-SEP-17 5UWY 1 REMARK REVDAT 1 15-MAR-17 5UWY 0 JRNL AUTH K.TAN,M.ZHOU,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THIOREDOXIN REDUCTASE FROM JRNL TITL 2 STREPTOCOCCUS PYOGENES MGAS5005 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 12497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2587 - 4.3169 0.99 3480 168 0.1888 0.2352 REMARK 3 2 4.3169 - 3.4268 1.00 3338 194 0.1908 0.2420 REMARK 3 3 3.4268 - 2.9937 0.94 3153 160 0.2623 0.3061 REMARK 3 4 2.9937 - 2.7201 0.58 1909 95 0.2926 0.3443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2427 REMARK 3 ANGLE : 0.684 3315 REMARK 3 CHIRALITY : 0.054 371 REMARK 3 PLANARITY : 0.004 423 REMARK 3 DIHEDRAL : 8.319 1863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4936 3.9333 49.7091 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.7215 REMARK 3 T33: 0.1776 T12: -0.0630 REMARK 3 T13: 0.0761 T23: 0.1657 REMARK 3 L TENSOR REMARK 3 L11: 2.2648 L22: 3.3479 REMARK 3 L33: 1.2087 L12: 0.9378 REMARK 3 L13: 0.9564 L23: 1.7627 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 0.1153 S13: 0.2731 REMARK 3 S21: -0.8034 S22: -0.1470 S23: -0.2676 REMARK 3 S31: -0.4287 S32: 0.9783 S33: -0.3073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1896 26.8700 73.1153 REMARK 3 T TENSOR REMARK 3 T11: 0.7386 T22: 0.3830 REMARK 3 T33: 0.6857 T12: -0.3669 REMARK 3 T13: -0.1795 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.4586 L22: 0.2896 REMARK 3 L33: 1.2010 L12: 0.1816 REMARK 3 L13: 0.1722 L23: -0.3771 REMARK 3 S TENSOR REMARK 3 S11: 0.1943 S12: -0.3780 S13: 0.4456 REMARK 3 S21: 0.0384 S22: -0.0369 S23: 0.0242 REMARK 3 S31: -0.3731 S32: -0.0065 S33: -0.1003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8295 31.6535 67.5143 REMARK 3 T TENSOR REMARK 3 T11: 0.9446 T22: 0.3768 REMARK 3 T33: 0.8527 T12: -0.3433 REMARK 3 T13: -0.1339 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.2237 L22: 0.1036 REMARK 3 L33: 0.4598 L12: -0.2271 REMARK 3 L13: 0.2342 L23: 0.1156 REMARK 3 S TENSOR REMARK 3 S11: 0.2865 S12: -0.2218 S13: 0.7806 REMARK 3 S21: -0.0648 S22: -0.0501 S23: -0.0729 REMARK 3 S31: -0.2000 S32: 0.0264 S33: 0.0522 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0718 2.8567 54.6383 REMARK 3 T TENSOR REMARK 3 T11: 0.1514 T22: 0.2957 REMARK 3 T33: 0.2223 T12: 0.0139 REMARK 3 T13: -0.1028 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 5.4325 L22: 3.1181 REMARK 3 L33: 3.4797 L12: -1.3879 REMARK 3 L13: 2.2426 L23: -0.2101 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.1265 S13: 0.1563 REMARK 3 S21: -0.5526 S22: -0.4532 S23: 0.6810 REMARK 3 S31: -0.3030 S32: -0.0217 S33: 0.1163 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M NAH2PO4/K2HPO4, PH 5.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.79900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.79900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.33450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.22350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.33450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.22350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.79900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.33450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.22350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.79900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.33450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.22350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 129.59800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 304 REMARK 465 SER A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -2 OG REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 GLU A 99 OE1 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ARG A 139 CZ NH1 NH2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 208 CE NZ REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 GLN A 221 CG CD OE1 NE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 273 O3' FAD A 401 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 121 NH1 ARG A 172 8556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 1 101.84 -164.72 REMARK 500 GLN A 38 -9.95 -58.15 REMARK 500 ASP A 95 -3.58 -145.30 REMARK 500 PHE A 138 47.78 -105.93 REMARK 500 ASP A 206 -6.73 66.61 REMARK 500 ILE A 207 -62.26 -109.98 REMARK 500 ASP A 258 -163.53 -116.67 REMARK 500 SER A 302 43.07 -74.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 DBREF1 5UWY A 2 305 UNP A0A0C6G0E1_STRPY DBREF2 5UWY A A0A0C6G0E1 2 305 SEQADV 5UWY SER A -2 UNP A0A0C6G0E EXPRESSION TAG SEQADV 5UWY ASN A -1 UNP A0A0C6G0E EXPRESSION TAG SEQADV 5UWY ALA A 0 UNP A0A0C6G0E EXPRESSION TAG SEQADV 5UWY MSE A 1 UNP A0A0C6G0E EXPRESSION TAG SEQRES 1 A 308 SER ASN ALA MSE TYR ASP THR LEU ILE ILE GLY SER GLY SEQRES 2 A 308 PRO ALA GLY MSE THR ALA ALA LEU TYR ALA ALA ARG SER SEQRES 3 A 308 ASN LEU SER VAL ALA ILE ILE GLU GLN GLY ALA PRO GLY SEQRES 4 A 308 GLY GLN MSE ASN ASN THR PHE ASP ILE GLU ASN TYR PRO SEQRES 5 A 308 GLY TYR ASP HIS ILE SER GLY PRO GLU LEU ALA MSE LYS SEQRES 6 A 308 MSE TYR GLU PRO LEU GLU LYS PHE ASN VAL GLU ASN ILE SEQRES 7 A 308 TYR GLY ILE VAL GLN LYS ILE GLU ASN PHE GLY ASP TYR SEQRES 8 A 308 LYS CYS VAL LEU THR GLU ASP ALA SER TYR GLU ALA LYS SEQRES 9 A 308 THR VAL ILE ILE ALA THR GLY ALA LYS TYR ARG VAL LEU SEQRES 10 A 308 GLY VAL PRO GLY GLU GLU TYR TYR THR SER ARG GLY VAL SEQRES 11 A 308 SER TYR CYS ALA VAL CYS ASP GLY ALA PHE PHE ARG ASP SEQRES 12 A 308 GLN ASP LEU LEU VAL VAL GLY GLY GLY ASP SER ALA VAL SEQRES 13 A 308 GLU GLU ALA ILE TYR LEU THR GLN PHE ALA LYS LYS VAL SEQRES 14 A 308 THR VAL VAL HIS ARG ARG ASP GLN LEU ARG ALA GLN LYS SEQRES 15 A 308 ILE LEU GLN ASP ARG ALA PHE ALA ASN ASP LYS VAL ASP SEQRES 16 A 308 PHE ILE TRP ASP SER VAL VAL LYS GLU ILE GLN GLY ASN SEQRES 17 A 308 ASP ILE LYS VAL SER ASN VAL LEU ILE GLU ASN VAL LYS SEQRES 18 A 308 THR GLY GLN VAL THR ASP HIS ALA PHE GLY GLY VAL PHE SEQRES 19 A 308 ILE TYR VAL GLY MSE ASN PRO VAL THR GLY MSE VAL LYS SEQRES 20 A 308 ASP LEU GLU ILE THR ASP SER GLU GLY TRP ILE ILE THR SEQRES 21 A 308 ASP ASP HIS MSE ARG THR SER ILE PRO GLY ILE PHE ALA SEQRES 22 A 308 ILE GLY ASP VAL ARG GLN LYS ASP LEU ARG GLN ILE THR SEQRES 23 A 308 THR ALA VAL GLY ASP GLY ALA ILE ALA GLY GLN GLY VAL SEQRES 24 A 308 TYR HIS TYR LEU GLU SER PHE SER SER MODRES 5UWY MSE A 14 MET MODIFIED RESIDUE MODRES 5UWY MSE A 39 MET MODIFIED RESIDUE MODRES 5UWY MSE A 61 MET MODIFIED RESIDUE MODRES 5UWY MSE A 63 MET MODIFIED RESIDUE MODRES 5UWY MSE A 236 MET MODIFIED RESIDUE MODRES 5UWY MSE A 242 MET MODIFIED RESIDUE MODRES 5UWY MSE A 261 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 39 8 HET MSE A 61 8 HET MSE A 63 8 HET MSE A 236 8 HET MSE A 242 8 HET MSE A 261 8 HET FAD A 401 53 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *17(H2 O) HELIX 1 AA1 GLY A 10 SER A 23 1 14 HELIX 2 AA2 GLY A 36 THR A 42 5 7 HELIX 3 AA3 SER A 55 LYS A 69 1 15 HELIX 4 AA4 CYS A 130 GLY A 135 1 6 HELIX 5 AA5 ALA A 136 PHE A 138 5 3 HELIX 6 AA6 GLY A 149 THR A 160 1 12 HELIX 7 AA7 GLN A 178 ASN A 188 1 11 HELIX 8 AA8 THR A 240 GLU A 247 5 8 HELIX 9 AA9 GLY A 272 ARG A 275 5 4 HELIX 10 AB1 GLN A 281 SER A 302 1 22 SHEET 1 AA1 6 GLU A 73 TYR A 76 0 SHEET 2 AA1 6 VAL A 27 GLU A 31 1 N ILE A 29 O ILE A 75 SHEET 3 AA1 6 TYR A 2 ILE A 7 1 N ILE A 6 O ALA A 28 SHEET 4 AA1 6 SER A 97 ILE A 105 1 O ILE A 104 N ILE A 7 SHEET 5 AA1 6 LYS A 89 LEU A 92 -1 N VAL A 91 O TYR A 98 SHEET 6 AA1 6 LYS A 81 ASN A 84 -1 N LYS A 81 O LEU A 92 SHEET 1 AA2 5 GLU A 73 TYR A 76 0 SHEET 2 AA2 5 VAL A 27 GLU A 31 1 N ILE A 29 O ILE A 75 SHEET 3 AA2 5 TYR A 2 ILE A 7 1 N ILE A 6 O ALA A 28 SHEET 4 AA2 5 SER A 97 ILE A 105 1 O ILE A 104 N ILE A 7 SHEET 5 AA2 5 ILE A 268 ALA A 270 1 O PHE A 269 N ILE A 105 SHEET 1 AA3 2 ALA A 109 TYR A 111 0 SHEET 2 AA3 2 MSE A 236 PRO A 238 -1 O ASN A 237 N LYS A 110 SHEET 1 AA4 5 VAL A 127 SER A 128 0 SHEET 2 AA4 5 GLY A 229 ILE A 232 1 O ILE A 232 N SER A 128 SHEET 3 AA4 5 ASP A 142 VAL A 146 1 N LEU A 144 O PHE A 231 SHEET 4 AA4 5 LYS A 165 VAL A 169 1 O VAL A 169 N VAL A 145 SHEET 5 AA4 5 VAL A 191 ILE A 194 1 O ILE A 194 N VAL A 168 SHEET 1 AA5 3 SER A 197 GLY A 204 0 SHEET 2 AA5 3 VAL A 209 ASN A 216 -1 O GLU A 215 N VAL A 198 SHEET 3 AA5 3 VAL A 222 ALA A 226 -1 O THR A 223 N ILE A 214 SSBOND 1 CYS A 130 CYS A 133 1555 1555 2.05 LINK C ALA A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N TYR A 2 1555 1555 1.33 LINK C GLY A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N THR A 15 1555 1555 1.34 LINK C GLN A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ASN A 40 1555 1555 1.33 LINK C ALA A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N LYS A 62 1555 1555 1.34 LINK C LYS A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N TYR A 64 1555 1555 1.34 LINK C GLY A 235 N MSE A 236 1555 1555 1.34 LINK C MSE A 236 N ASN A 237 1555 1555 1.33 LINK C GLY A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N VAL A 243 1555 1555 1.33 LINK C HIS A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N ARG A 262 1555 1555 1.33 SITE 1 AC1 23 GLY A 10 PRO A 11 ALA A 12 GLU A 31 SITE 2 AC1 23 GLN A 32 GLY A 37 GLN A 38 THR A 42 SITE 3 AC1 23 ASN A 47 GLY A 77 ILE A 78 VAL A 79 SITE 4 AC1 23 THR A 107 GLY A 108 TYR A 111 CYS A 133 SITE 5 AC1 23 ASP A 134 VAL A 239 GLY A 272 ASP A 273 SITE 6 AC1 23 ARG A 280 GLN A 281 ILE A 282 SITE 1 AC2 4 THR A 284 GLY A 287 ASP A 288 ILE A 291 SITE 1 AC3 4 GLY A 149 ASP A 150 SER A 151 ARG A 176 SITE 1 AC4 4 ASP A 259 HIS A 260 ASP A 278 HOH A 503 CRYST1 62.669 126.447 129.598 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007716 0.00000