data_5UZ3 # _entry.id 5UZ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UZ3 pdb_00005uz3 10.2210/pdb5uz3/pdb WWPDB D_1000226592 ? ? BMRB 30252 ? 10.13018/BMR30252 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-05-31 2 'Structure model' 1 1 2017-09-13 3 'Structure model' 1 2 2018-12-19 4 'Structure model' 1 3 2019-11-27 5 'Structure model' 1 4 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' pdbx_audit_support 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_nmr_spectrometer 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_ASTM' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_DOI' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation.year' 14 4 'Structure model' '_pdbx_audit_support.funding_organization' 15 4 'Structure model' '_pdbx_nmr_software.name' 16 4 'Structure model' '_pdbx_nmr_spectrometer.model' 17 5 'Structure model' '_database_2.pdbx_DOI' 18 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5UZ3 _pdbx_database_status.recvd_initial_deposition_date 2017-02-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB 'Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th position and 8-oxoguanine at the 10th position' 30252 unspecified PDB . 5UZ1 unspecified PDB . 5UZ2 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gruber, D.R.' 1 ? 'Hoppins, J.J.' 2 ? 'Miears, H.L.' 3 ? 'Endutkin, A.V.' 4 ? 'Zharkov, D.O.' 5 ? 'Smirnov, S.L.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 10827 _citation.page_last 10839 _citation.title 'Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky893 _citation.pdbx_database_id_PubMed 30289469 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gruber, D.R.' 1 ? primary 'Toner, J.J.' 2 ? primary 'Miears, H.L.' 3 ? primary 'Shernyukov, A.V.' 4 ? primary 'Kiryutin, A.S.' 5 ? primary 'Lomzov, A.A.' 6 ? primary 'Endutkin, A.V.' 7 ? primary 'Grin, I.R.' 8 ? primary 'Petrova, D.V.' 9 ? primary 'Kupryushkin, M.S.' 10 ? primary 'Yurkovskaya, A.V.' 11 ? primary 'Johnson, E.C.' 12 ? primary 'Okon, M.' 13 ? primary 'Bagryanskaya, E.G.' 14 ? primary 'Zharkov, D.O.' 15 ? primary 'Smirnov, S.L.' 16 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3') ; _entity.formula_weight 3693.419 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(5CM)(8OG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 5CM n 1 10 8OG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 5CM 9 9 9 5CM DMC A . n A 1 10 8OG 10 10 10 8OG 8OG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 5CM 9 21 21 5CM DMC B . n B 1 10 8OG 10 22 22 8OG 8OG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UZ3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5UZ3 _struct.title 'Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th position and 8-oxoguanine at the 10th position' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UZ3 _struct_keywords.text 'Drew-Dickerson, DNA, non-canonical, modified DNA, methylated DNA, epigenetics, CpG site, 8-oxoguanine, 5-methylcytosine' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5UZ3 _struct_ref.pdbx_db_accession 5UZ3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UZ3 A 1 ? 12 ? 5UZ3 1 ? 12 ? 1 12 2 1 5UZ3 B 1 ? 12 ? 5UZ3 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 8 "O3'" ? ? ? 1_555 A 5CM 9 P ? ? A DT 8 A 5CM 9 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A 5CM 9 "O3'" ? ? ? 1_555 A 8OG 10 P ? ? A 5CM 9 A 8OG 10 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale3 covale both ? A 8OG 10 "O3'" ? ? ? 1_555 A DC 11 P ? ? A 8OG 10 A DC 11 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? B DT 8 "O3'" ? ? ? 1_555 B 5CM 9 P ? ? B DT 20 B 5CM 21 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale5 covale both ? B 5CM 9 "O3'" ? ? ? 1_555 B 8OG 10 P ? ? B 5CM 21 B 8OG 22 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale6 covale both ? B 8OG 10 "O3'" ? ? ? 1_555 B DC 11 P ? ? B 8OG 22 B DC 23 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B 8OG 10 N1 ? ? A DC 3 B 8OG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B 8OG 10 O6 ? ? A DC 3 B 8OG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B 8OG 10 N2 ? ? A DC 3 B 8OG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B 5CM 9 N3 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B 5CM 9 O2 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B 5CM 9 N4 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A 5CM 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A 5CM 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 5CM 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A 8OG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A 8OG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A 8OG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A 8OG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A 8OG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A 8OG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.67 121.90 -5.23 0.70 N 2 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.84 121.90 -5.06 0.70 N 3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.85 108.30 2.55 0.30 N 4 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.76 117.00 -3.24 0.50 N 5 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.17 117.70 3.47 0.50 N 6 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.78 118.60 -4.82 0.60 N 7 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.78 117.00 -3.22 0.50 N 8 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.33 117.70 3.63 0.50 N 9 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.88 118.60 -4.72 0.60 N 10 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.41 108.30 2.11 0.30 N 11 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.48 108.30 2.18 0.30 N 12 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.58 121.90 -5.32 0.70 N 13 1 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.68 121.90 -5.22 0.70 N 14 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.77 121.90 -5.13 0.70 N 15 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.74 108.30 2.44 0.30 N 16 1 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.73 117.00 -3.27 0.50 N 17 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.25 117.70 3.55 0.50 N 18 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.87 118.60 -4.73 0.60 N 19 1 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.78 117.00 -3.22 0.50 N 20 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.33 117.70 3.63 0.50 N 21 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.81 118.60 -4.79 0.60 N 22 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.48 108.30 2.18 0.30 N 23 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 119.28 122.90 -3.62 0.60 N 24 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.47 108.30 2.17 0.30 N 25 1 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.55 121.90 -5.35 0.70 N 26 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.65 121.90 -5.25 0.70 N 27 2 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.82 121.90 -5.08 0.70 N 28 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.06 108.30 2.76 0.30 N 29 2 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.80 117.00 -3.20 0.50 N 30 2 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.23 117.70 3.53 0.50 N 31 2 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.78 118.60 -4.82 0.60 N 32 2 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.83 117.00 -3.17 0.50 N 33 2 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.36 117.70 3.66 0.50 N 34 2 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.86 118.60 -4.74 0.60 N 35 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.55 108.30 2.25 0.30 N 36 2 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.60 121.90 -5.30 0.70 N 37 2 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.74 121.90 -5.16 0.70 N 38 2 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.64 121.90 -5.26 0.70 N 39 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.34 108.30 3.04 0.30 N 40 2 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.76 117.00 -3.24 0.50 N 41 2 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.28 117.70 3.58 0.50 N 42 2 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.82 118.60 -4.78 0.60 N 43 2 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.79 117.00 -3.21 0.50 N 44 2 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.29 117.70 3.59 0.50 N 45 2 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.79 118.60 -4.81 0.60 N 46 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.60 108.30 2.30 0.30 N 47 2 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.54 121.90 -5.36 0.70 N 48 2 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.31 108.30 2.01 0.30 N 49 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.63 121.90 -5.27 0.70 N 50 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.19 108.30 1.89 0.30 N 51 3 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.63 121.90 -5.27 0.70 N 52 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.14 108.30 2.84 0.30 N 53 3 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.84 117.00 -3.16 0.50 N 54 3 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.21 117.70 3.51 0.50 N 55 3 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.87 118.60 -4.73 0.60 N 56 3 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.80 117.00 -3.20 0.50 N 57 3 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.31 117.70 3.61 0.50 N 58 3 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.76 118.60 -4.84 0.60 N 59 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.69 108.30 2.39 0.30 N 60 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.11 108.30 2.81 0.30 N 61 3 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.54 118.90 3.64 0.60 N 62 3 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.46 121.90 -5.44 0.70 N 63 3 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.60 121.90 -5.30 0.70 N 64 3 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.79 121.90 -5.11 0.70 N 65 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.87 108.30 2.57 0.30 N 66 3 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.68 117.00 -3.32 0.50 N 67 3 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.22 117.70 3.52 0.50 N 68 3 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.67 118.60 -4.93 0.60 N 69 3 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.79 117.00 -3.21 0.50 N 70 3 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.31 117.70 3.61 0.50 N 71 3 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.90 118.60 -4.70 0.60 N 72 3 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.26 108.30 1.96 0.30 N 73 3 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.12 108.30 2.82 0.30 N 74 3 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.59 121.90 -5.31 0.70 N 75 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.67 121.90 -5.23 0.70 N 76 4 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.88 121.90 -5.02 0.70 N 77 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.58 108.30 2.28 0.30 N 78 4 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.69 117.00 -3.31 0.50 N 79 4 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.19 117.70 3.49 0.50 N 80 4 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.57 118.60 -5.03 0.60 N 81 4 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.83 117.00 -3.17 0.50 N 82 4 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.35 117.70 3.65 0.50 N 83 4 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.91 118.60 -4.69 0.60 N 84 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.17 108.30 1.87 0.30 N 85 4 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.50 121.90 -5.40 0.70 N 86 4 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.66 121.90 -5.24 0.70 N 87 4 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.62 121.90 -5.28 0.70 N 88 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.37 108.30 3.07 0.30 N 89 4 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.70 117.00 -3.30 0.50 N 90 4 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.36 117.70 3.66 0.50 N 91 4 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.88 118.60 -4.72 0.60 N 92 4 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.75 117.00 -3.25 0.50 N 93 4 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.32 117.70 3.62 0.50 N 94 4 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.73 118.60 -4.87 0.60 N 95 4 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.11 108.30 1.81 0.30 N 96 4 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.57 121.90 -5.33 0.70 N 97 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.67 121.90 -5.23 0.70 N 98 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.25 108.30 1.95 0.30 N 99 5 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.58 121.90 -5.32 0.70 N 100 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.27 108.30 2.97 0.30 N 101 5 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.71 117.00 -3.29 0.50 N 102 5 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.29 117.70 3.59 0.50 N 103 5 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.80 118.60 -4.80 0.60 N 104 5 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.74 117.00 -3.26 0.50 N 105 5 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.30 117.70 3.60 0.50 N 106 5 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.80 118.60 -4.80 0.60 N 107 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.29 108.30 1.99 0.30 N 108 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.13 108.30 2.83 0.30 N 109 5 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.51 121.90 -5.39 0.70 N 110 5 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.67 121.90 -5.23 0.70 N 111 5 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.85 121.90 -5.05 0.70 N 112 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.57 108.30 2.27 0.30 N 113 5 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.67 117.00 -3.33 0.50 N 114 5 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.16 117.70 3.46 0.50 N 115 5 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.63 118.60 -4.97 0.60 N 116 5 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.81 117.00 -3.19 0.50 N 117 5 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.34 117.70 3.64 0.50 N 118 5 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 114.07 118.60 -4.53 0.60 N 119 5 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.22 108.30 1.92 0.30 N 120 5 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.63 121.90 -5.27 0.70 N 121 6 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.60 121.90 -5.30 0.70 N 122 6 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.87 121.90 -5.03 0.70 N 123 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.31 108.30 2.01 0.30 N 124 6 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.72 117.00 -3.28 0.50 N 125 6 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.21 117.70 3.51 0.50 N 126 6 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.63 118.60 -4.97 0.60 N 127 6 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.83 117.00 -3.17 0.50 N 128 6 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.27 117.70 3.57 0.50 N 129 6 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.00 118.60 -4.60 0.60 N 130 6 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.57 121.90 -5.33 0.70 N 131 6 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.75 121.90 -5.15 0.70 N 132 6 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.73 121.90 -5.17 0.70 N 133 6 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.55 108.30 3.25 0.30 N 134 6 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.83 117.00 -3.17 0.50 N 135 6 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.25 117.70 3.55 0.50 N 136 6 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.87 118.60 -4.73 0.60 N 137 6 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.74 117.00 -3.26 0.50 N 138 6 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.27 117.70 3.57 0.50 N 139 6 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.79 118.60 -4.81 0.60 N 140 6 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.24 108.30 1.94 0.30 N 141 6 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 119.29 122.90 -3.61 0.60 N 142 6 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.00 108.30 2.70 0.30 N 143 6 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.60 121.90 -5.30 0.70 N 144 7 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.62 121.90 -5.28 0.70 N 145 7 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.81 121.90 -5.09 0.70 N 146 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.52 108.30 2.22 0.30 N 147 7 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.65 117.00 -3.35 0.50 N 148 7 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.18 117.70 3.48 0.50 N 149 7 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.58 118.60 -5.02 0.60 N 150 7 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.78 117.00 -3.22 0.50 N 151 7 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.37 117.70 3.67 0.50 N 152 7 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.94 118.60 -4.66 0.60 N 153 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.29 122.90 -3.61 0.60 N 154 7 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.12 108.30 2.82 0.30 N 155 7 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.64 121.90 -5.26 0.70 N 156 7 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.67 121.90 -5.23 0.70 N 157 7 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.78 121.90 -5.12 0.70 N 158 7 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.29 108.30 1.99 0.30 N 159 7 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.65 117.00 -3.35 0.50 N 160 7 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.22 117.70 3.52 0.50 N 161 7 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.65 118.60 -4.95 0.60 N 162 7 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.89 117.00 -3.11 0.50 N 163 7 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.40 117.70 3.70 0.50 N 164 7 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 114.00 118.60 -4.60 0.60 N 165 7 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.13 108.30 2.83 0.30 N 166 7 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 122.54 118.90 3.64 0.60 N 167 7 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.44 121.90 -5.46 0.70 N 168 8 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.65 121.90 -5.25 0.70 N 169 8 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.65 121.90 -5.25 0.70 N 170 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.16 108.30 2.86 0.30 N 171 8 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.75 117.00 -3.25 0.50 N 172 8 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.37 117.70 3.67 0.50 N 173 8 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.86 118.60 -4.74 0.60 N 174 8 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.77 117.00 -3.23 0.50 N 175 8 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.36 117.70 3.66 0.50 N 176 8 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.76 118.60 -4.84 0.60 N 177 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.62 108.30 2.32 0.30 N 178 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.25 122.90 -3.65 0.60 N 179 8 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.89 108.30 2.59 0.30 N 180 8 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.54 121.90 -5.36 0.70 N 181 8 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.68 121.90 -5.22 0.70 N 182 8 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.83 121.90 -5.07 0.70 N 183 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.01 108.30 2.71 0.30 N 184 8 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.69 117.00 -3.31 0.50 N 185 8 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.33 117.70 3.63 0.50 N 186 8 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.81 118.60 -4.79 0.60 N 187 8 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.75 117.00 -3.25 0.50 N 188 8 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.35 117.70 3.65 0.50 N 189 8 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.73 118.60 -4.87 0.60 N 190 8 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.26 108.30 1.96 0.30 N 191 8 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.18 108.30 2.88 0.30 N 192 8 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.57 121.90 -5.33 0.70 N 193 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.44 108.30 4.14 0.30 N 194 9 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.59 121.90 -5.31 0.70 N 195 9 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.80 121.90 -5.10 0.70 N 196 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.55 108.30 2.25 0.30 N 197 9 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.71 117.00 -3.29 0.50 N 198 9 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.13 117.70 3.43 0.50 N 199 9 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.58 118.60 -5.02 0.60 N 200 9 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.84 117.00 -3.16 0.50 N 201 9 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.40 117.70 3.70 0.50 N 202 9 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.94 118.60 -4.66 0.60 N 203 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.15 108.30 1.85 0.30 N 204 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.29 122.90 -3.61 0.60 N 205 9 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.55 121.90 -5.35 0.70 N 206 9 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.82 108.30 2.52 0.30 N 207 9 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.81 121.90 -5.09 0.70 N 208 9 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.70 121.90 -5.20 0.70 N 209 9 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.18 108.30 2.88 0.30 N 210 9 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.77 117.00 -3.23 0.50 N 211 9 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.34 117.70 3.64 0.50 N 212 9 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.87 118.60 -4.73 0.60 N 213 9 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.81 117.00 -3.19 0.50 N 214 9 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.29 117.70 3.59 0.50 N 215 9 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.79 118.60 -4.81 0.60 N 216 9 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.66 121.90 -5.24 0.70 N 217 9 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.89 108.30 2.59 0.30 N 218 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.60 108.30 4.30 0.30 N 219 10 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.44 121.90 -5.46 0.70 N 220 10 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.83 121.90 -5.07 0.70 N 221 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.54 108.30 2.24 0.30 N 222 10 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.62 117.00 -3.38 0.50 N 223 10 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.25 117.70 3.55 0.50 N 224 10 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.61 118.60 -4.99 0.60 N 225 10 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.87 117.00 -3.13 0.50 N 226 10 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.32 117.70 3.62 0.50 N 227 10 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.01 118.60 -4.59 0.60 N 228 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.44 108.30 2.14 0.30 N 229 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.25 122.90 -3.65 0.60 N 230 10 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.66 121.90 -5.24 0.70 N 231 10 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.64 121.90 -5.26 0.70 N 232 10 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.63 121.90 -5.27 0.70 N 233 10 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.32 108.30 3.02 0.30 N 234 10 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.79 117.00 -3.21 0.50 N 235 10 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.29 117.70 3.59 0.50 N 236 10 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.83 118.60 -4.77 0.60 N 237 10 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.77 117.00 -3.23 0.50 N 238 10 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.33 117.70 3.63 0.50 N 239 10 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.70 118.60 -4.90 0.60 N 240 10 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 119.26 122.90 -3.64 0.60 N 241 10 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.59 121.90 -5.31 0.70 N 242 10 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.71 108.30 2.41 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.062 'SIDE CHAIN' 2 1 DG B 14 ? ? 0.067 'SIDE CHAIN' 3 2 DG A 2 ? ? 0.060 'SIDE CHAIN' 4 2 DG B 14 ? ? 0.058 'SIDE CHAIN' 5 3 DG B 14 ? ? 0.056 'SIDE CHAIN' 6 4 DG A 2 ? ? 0.056 'SIDE CHAIN' 7 4 DG B 14 ? ? 0.067 'SIDE CHAIN' 8 6 DG B 14 ? ? 0.063 'SIDE CHAIN' 9 7 DG A 2 ? ? 0.053 'SIDE CHAIN' 10 9 DG A 2 ? ? 0.058 'SIDE CHAIN' 11 9 DG B 14 ? ? 0.060 'SIDE CHAIN' 12 10 DG A 2 ? ? 0.056 'SIDE CHAIN' 13 10 DG B 14 ? ? 0.059 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5UZ3 _pdbx_nmr_ensemble.conformers_calculated_total_number 18 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5UZ3 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;50 mM sodium chloride, 10 mM potassium chloride, 0.1 mM EDTA, 1 mM DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3'), 100% D2O ; _pdbx_nmr_sample_details.solvent_system '100% D2O' _pdbx_nmr_sample_details.label met9oG10 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium chloride' 50 ? mM 'natural abundance' 1 'potassium chloride' 10 ? mM 'natural abundance' 1 EDTA 0.1 ? mM 'natural abundance' 1 ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3') ; 1 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ? ambient 6.8 120 ? ? mM D2O ? pH ? ? K 2 278 ? ambient 6.8 120 ? ? mM H2O ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 2 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D DQF-COSY' 1 isotropic # _pdbx_nmr_refine.entry_id 5UZ3 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 2 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 3 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 4 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 8OG OP3 O N N 38 8OG P P N N 39 8OG OP1 O N N 40 8OG OP2 O N N 41 8OG "O5'" O N N 42 8OG "C5'" C N N 43 8OG "C4'" C N R 44 8OG "O4'" O N N 45 8OG "C3'" C N S 46 8OG "O3'" O N N 47 8OG "C2'" C N N 48 8OG "C1'" C N R 49 8OG N9 N N N 50 8OG C8 C N N 51 8OG N7 N N N 52 8OG C5 C N N 53 8OG C6 C N N 54 8OG O6 O N N 55 8OG N1 N N N 56 8OG C2 C N N 57 8OG N2 N N N 58 8OG N3 N N N 59 8OG C4 C N N 60 8OG O8 O N N 61 8OG HOP3 H N N 62 8OG HOP2 H N N 63 8OG "H5'" H N N 64 8OG "H5''" H N N 65 8OG "H4'" H N N 66 8OG "H3'" H N N 67 8OG "HO3'" H N N 68 8OG "H2'" H N N 69 8OG "H2''" H N N 70 8OG "H1'" H N N 71 8OG H7 H N N 72 8OG H1 H N N 73 8OG H21 H N N 74 8OG H22 H N N 75 DA OP3 O N N 76 DA P P N N 77 DA OP1 O N N 78 DA OP2 O N N 79 DA "O5'" O N N 80 DA "C5'" C N N 81 DA "C4'" C N R 82 DA "O4'" O N N 83 DA "C3'" C N S 84 DA "O3'" O N N 85 DA "C2'" C N N 86 DA "C1'" C N R 87 DA N9 N Y N 88 DA C8 C Y N 89 DA N7 N Y N 90 DA C5 C Y N 91 DA C6 C Y N 92 DA N6 N N N 93 DA N1 N Y N 94 DA C2 C Y N 95 DA N3 N Y N 96 DA C4 C Y N 97 DA HOP3 H N N 98 DA HOP2 H N N 99 DA "H5'" H N N 100 DA "H5''" H N N 101 DA "H4'" H N N 102 DA "H3'" H N N 103 DA "HO3'" H N N 104 DA "H2'" H N N 105 DA "H2''" H N N 106 DA "H1'" H N N 107 DA H8 H N N 108 DA H61 H N N 109 DA H62 H N N 110 DA H2 H N N 111 DC OP3 O N N 112 DC P P N N 113 DC OP1 O N N 114 DC OP2 O N N 115 DC "O5'" O N N 116 DC "C5'" C N N 117 DC "C4'" C N R 118 DC "O4'" O N N 119 DC "C3'" C N S 120 DC "O3'" O N N 121 DC "C2'" C N N 122 DC "C1'" C N R 123 DC N1 N N N 124 DC C2 C N N 125 DC O2 O N N 126 DC N3 N N N 127 DC C4 C N N 128 DC N4 N N N 129 DC C5 C N N 130 DC C6 C N N 131 DC HOP3 H N N 132 DC HOP2 H N N 133 DC "H5'" H N N 134 DC "H5''" H N N 135 DC "H4'" H N N 136 DC "H3'" H N N 137 DC "HO3'" H N N 138 DC "H2'" H N N 139 DC "H2''" H N N 140 DC "H1'" H N N 141 DC H41 H N N 142 DC H42 H N N 143 DC H5 H N N 144 DC H6 H N N 145 DG OP3 O N N 146 DG P P N N 147 DG OP1 O N N 148 DG OP2 O N N 149 DG "O5'" O N N 150 DG "C5'" C N N 151 DG "C4'" C N R 152 DG "O4'" O N N 153 DG "C3'" C N S 154 DG "O3'" O N N 155 DG "C2'" C N N 156 DG "C1'" C N R 157 DG N9 N Y N 158 DG C8 C Y N 159 DG N7 N Y N 160 DG C5 C Y N 161 DG C6 C N N 162 DG O6 O N N 163 DG N1 N N N 164 DG C2 C N N 165 DG N2 N N N 166 DG N3 N N N 167 DG C4 C Y N 168 DG HOP3 H N N 169 DG HOP2 H N N 170 DG "H5'" H N N 171 DG "H5''" H N N 172 DG "H4'" H N N 173 DG "H3'" H N N 174 DG "HO3'" H N N 175 DG "H2'" H N N 176 DG "H2''" H N N 177 DG "H1'" H N N 178 DG H8 H N N 179 DG H1 H N N 180 DG H21 H N N 181 DG H22 H N N 182 DT OP3 O N N 183 DT P P N N 184 DT OP1 O N N 185 DT OP2 O N N 186 DT "O5'" O N N 187 DT "C5'" C N N 188 DT "C4'" C N R 189 DT "O4'" O N N 190 DT "C3'" C N S 191 DT "O3'" O N N 192 DT "C2'" C N N 193 DT "C1'" C N R 194 DT N1 N N N 195 DT C2 C N N 196 DT O2 O N N 197 DT N3 N N N 198 DT C4 C N N 199 DT O4 O N N 200 DT C5 C N N 201 DT C7 C N N 202 DT C6 C N N 203 DT HOP3 H N N 204 DT HOP2 H N N 205 DT "H5'" H N N 206 DT "H5''" H N N 207 DT "H4'" H N N 208 DT "H3'" H N N 209 DT "HO3'" H N N 210 DT "H2'" H N N 211 DT "H2''" H N N 212 DT "H1'" H N N 213 DT H3 H N N 214 DT H71 H N N 215 DT H72 H N N 216 DT H73 H N N 217 DT H6 H N N 218 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 8OG OP3 P sing N N 39 8OG OP3 HOP3 sing N N 40 8OG P OP1 doub N N 41 8OG P OP2 sing N N 42 8OG P "O5'" sing N N 43 8OG OP2 HOP2 sing N N 44 8OG "O5'" "C5'" sing N N 45 8OG "C5'" "C4'" sing N N 46 8OG "C5'" "H5'" sing N N 47 8OG "C5'" "H5''" sing N N 48 8OG "C4'" "O4'" sing N N 49 8OG "C4'" "C3'" sing N N 50 8OG "C4'" "H4'" sing N N 51 8OG "O4'" "C1'" sing N N 52 8OG "C3'" "O3'" sing N N 53 8OG "C3'" "C2'" sing N N 54 8OG "C3'" "H3'" sing N N 55 8OG "O3'" "HO3'" sing N N 56 8OG "C2'" "C1'" sing N N 57 8OG "C2'" "H2'" sing N N 58 8OG "C2'" "H2''" sing N N 59 8OG "C1'" N9 sing N N 60 8OG "C1'" "H1'" sing N N 61 8OG N9 C8 sing N N 62 8OG N9 C4 sing N N 63 8OG C8 N7 sing N N 64 8OG C8 O8 doub N N 65 8OG N7 C5 sing N N 66 8OG N7 H7 sing N N 67 8OG C5 C6 sing N N 68 8OG C5 C4 doub N N 69 8OG C6 O6 doub N N 70 8OG C6 N1 sing N N 71 8OG N1 C2 sing N N 72 8OG N1 H1 sing N N 73 8OG C2 N2 sing N N 74 8OG C2 N3 doub N N 75 8OG N2 H21 sing N N 76 8OG N2 H22 sing N N 77 8OG N3 C4 sing N N 78 DA OP3 P sing N N 79 DA OP3 HOP3 sing N N 80 DA P OP1 doub N N 81 DA P OP2 sing N N 82 DA P "O5'" sing N N 83 DA OP2 HOP2 sing N N 84 DA "O5'" "C5'" sing N N 85 DA "C5'" "C4'" sing N N 86 DA "C5'" "H5'" sing N N 87 DA "C5'" "H5''" sing N N 88 DA "C4'" "O4'" sing N N 89 DA "C4'" "C3'" sing N N 90 DA "C4'" "H4'" sing N N 91 DA "O4'" "C1'" sing N N 92 DA "C3'" "O3'" sing N N 93 DA "C3'" "C2'" sing N N 94 DA "C3'" "H3'" sing N N 95 DA "O3'" "HO3'" sing N N 96 DA "C2'" "C1'" sing N N 97 DA "C2'" "H2'" sing N N 98 DA "C2'" "H2''" sing N N 99 DA "C1'" N9 sing N N 100 DA "C1'" "H1'" sing N N 101 DA N9 C8 sing Y N 102 DA N9 C4 sing Y N 103 DA C8 N7 doub Y N 104 DA C8 H8 sing N N 105 DA N7 C5 sing Y N 106 DA C5 C6 sing Y N 107 DA C5 C4 doub Y N 108 DA C6 N6 sing N N 109 DA C6 N1 doub Y N 110 DA N6 H61 sing N N 111 DA N6 H62 sing N N 112 DA N1 C2 sing Y N 113 DA C2 N3 doub Y N 114 DA C2 H2 sing N N 115 DA N3 C4 sing Y N 116 DC OP3 P sing N N 117 DC OP3 HOP3 sing N N 118 DC P OP1 doub N N 119 DC P OP2 sing N N 120 DC P "O5'" sing N N 121 DC OP2 HOP2 sing N N 122 DC "O5'" "C5'" sing N N 123 DC "C5'" "C4'" sing N N 124 DC "C5'" "H5'" sing N N 125 DC "C5'" "H5''" sing N N 126 DC "C4'" "O4'" sing N N 127 DC "C4'" "C3'" sing N N 128 DC "C4'" "H4'" sing N N 129 DC "O4'" "C1'" sing N N 130 DC "C3'" "O3'" sing N N 131 DC "C3'" "C2'" sing N N 132 DC "C3'" "H3'" sing N N 133 DC "O3'" "HO3'" sing N N 134 DC "C2'" "C1'" sing N N 135 DC "C2'" "H2'" sing N N 136 DC "C2'" "H2''" sing N N 137 DC "C1'" N1 sing N N 138 DC "C1'" "H1'" sing N N 139 DC N1 C2 sing N N 140 DC N1 C6 sing N N 141 DC C2 O2 doub N N 142 DC C2 N3 sing N N 143 DC N3 C4 doub N N 144 DC C4 N4 sing N N 145 DC C4 C5 sing N N 146 DC N4 H41 sing N N 147 DC N4 H42 sing N N 148 DC C5 C6 doub N N 149 DC C5 H5 sing N N 150 DC C6 H6 sing N N 151 DG OP3 P sing N N 152 DG OP3 HOP3 sing N N 153 DG P OP1 doub N N 154 DG P OP2 sing N N 155 DG P "O5'" sing N N 156 DG OP2 HOP2 sing N N 157 DG "O5'" "C5'" sing N N 158 DG "C5'" "C4'" sing N N 159 DG "C5'" "H5'" sing N N 160 DG "C5'" "H5''" sing N N 161 DG "C4'" "O4'" sing N N 162 DG "C4'" "C3'" sing N N 163 DG "C4'" "H4'" sing N N 164 DG "O4'" "C1'" sing N N 165 DG "C3'" "O3'" sing N N 166 DG "C3'" "C2'" sing N N 167 DG "C3'" "H3'" sing N N 168 DG "O3'" "HO3'" sing N N 169 DG "C2'" "C1'" sing N N 170 DG "C2'" "H2'" sing N N 171 DG "C2'" "H2''" sing N N 172 DG "C1'" N9 sing N N 173 DG "C1'" "H1'" sing N N 174 DG N9 C8 sing Y N 175 DG N9 C4 sing Y N 176 DG C8 N7 doub Y N 177 DG C8 H8 sing N N 178 DG N7 C5 sing Y N 179 DG C5 C6 sing N N 180 DG C5 C4 doub Y N 181 DG C6 O6 doub N N 182 DG C6 N1 sing N N 183 DG N1 C2 sing N N 184 DG N1 H1 sing N N 185 DG C2 N2 sing N N 186 DG C2 N3 doub N N 187 DG N2 H21 sing N N 188 DG N2 H22 sing N N 189 DG N3 C4 sing N N 190 DT OP3 P sing N N 191 DT OP3 HOP3 sing N N 192 DT P OP1 doub N N 193 DT P OP2 sing N N 194 DT P "O5'" sing N N 195 DT OP2 HOP2 sing N N 196 DT "O5'" "C5'" sing N N 197 DT "C5'" "C4'" sing N N 198 DT "C5'" "H5'" sing N N 199 DT "C5'" "H5''" sing N N 200 DT "C4'" "O4'" sing N N 201 DT "C4'" "C3'" sing N N 202 DT "C4'" "H4'" sing N N 203 DT "O4'" "C1'" sing N N 204 DT "C3'" "O3'" sing N N 205 DT "C3'" "C2'" sing N N 206 DT "C3'" "H3'" sing N N 207 DT "O3'" "HO3'" sing N N 208 DT "C2'" "C1'" sing N N 209 DT "C2'" "H2'" sing N N 210 DT "C2'" "H2''" sing N N 211 DT "C1'" N1 sing N N 212 DT "C1'" "H1'" sing N N 213 DT N1 C2 sing N N 214 DT N1 C6 sing N N 215 DT C2 O2 doub N N 216 DT C2 N3 sing N N 217 DT N3 C4 sing N N 218 DT N3 H3 sing N N 219 DT C4 O4 doub N N 220 DT C4 C5 sing N N 221 DT C5 C7 sing N N 222 DT C5 C6 doub N N 223 DT C7 H71 sing N N 224 DT C7 H72 sing N N 225 DT C7 H73 sing N N 226 DT C6 H6 sing N N 227 # _ndb_struct_conf_na.entry_id 5UZ3 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.410 -0.129 0.259 -0.317 -11.552 -0.901 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.362 -0.129 0.177 -1.528 -15.647 -1.193 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B 8OG 10 1_555 0.314 -0.109 0.245 -1.771 -8.399 -0.325 3 A_DC3:8OG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B 5CM 9 1_555 -0.530 -0.133 -0.167 5.150 -12.003 1.140 4 A_DG4:5CM21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.115 -0.045 -0.340 3.660 -15.390 0.986 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.160 -0.004 -0.055 1.203 -19.019 -1.100 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.163 -0.002 -0.018 -3.636 -18.340 -0.987 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.114 -0.040 -0.312 -5.838 -14.262 0.410 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A 5CM 9 1_555 B DG 4 1_555 0.508 -0.129 -0.188 -5.318 -11.307 0.948 9 A_5CM9:DG16_B A 9 ? B 16 ? 19 1 1 A 8OG 10 1_555 B DC 3 1_555 -0.322 -0.111 0.236 2.339 -7.629 -0.464 10 A_8OG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.364 -0.128 0.160 2.671 -15.649 -1.241 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.423 -0.132 0.244 0.316 -12.438 -0.775 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.406 -0.287 3.222 4.400 9.200 36.507 -1.604 -0.070 3.089 14.345 -6.860 37.858 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B 8OG 10 1_555 0.731 -0.142 3.299 -0.152 -1.793 38.471 0.009 -1.128 3.299 -2.720 0.230 38.511 2 AA_DG2DC3:8OG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B 8OG 10 1_555 A DG 4 1_555 B 5CM 9 1_555 -0.608 -0.570 3.066 2.916 12.175 20.073 -4.966 2.341 2.246 31.300 -7.497 23.623 3 AA_DC3DG4:5CM218OG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B 5CM 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.574 0.100 3.309 0.113 4.931 41.491 -0.384 0.817 3.298 6.930 -0.159 41.770 4 AA_DG4DA5:DT205CM21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.237 -0.245 3.244 -3.865 3.018 37.864 -0.753 -0.122 3.223 4.628 5.925 38.169 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.049 -0.764 3.326 -0.214 -1.958 31.120 -1.040 0.050 3.367 -3.645 0.399 31.181 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.154 -0.242 3.238 3.594 2.426 39.018 -0.647 0.196 3.219 3.619 -5.361 39.249 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A 5CM 9 1_555 B DG 4 1_555 0.574 0.190 3.263 -0.063 4.867 40.990 -0.255 -0.822 3.263 6.921 0.090 41.265 8 AA_DT85CM9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A 5CM 9 1_555 B DG 4 1_555 A 8OG 10 1_555 B DC 3 1_555 0.594 -0.481 3.060 -3.142 12.354 19.824 -4.851 -2.389 2.254 31.963 8.130 23.534 9 AA_5CM98OG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A 8OG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.694 -0.096 3.289 0.369 -1.550 38.318 0.048 1.102 3.284 -2.360 -0.561 38.349 10 AA_8OG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.339 -0.367 3.240 -4.214 9.888 36.339 -1.816 -0.010 3.060 15.444 6.583 37.844 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1244641 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 500 ? 2 'AVANCE III' ? Bruker 700 ? # _atom_sites.entry_id 5UZ3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_